RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 WDR7Q9Y4E6 1490 aa24.75■■□□□ 1.55
LDLR-206ENST00000557958 ITSN2Q9NZM3 1697 aa24.72■■□□□ 1.55
LDLR-206ENST00000557958 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.71■■□□□ 1.55
LDLR-206ENST00000557958 PTPRKQ15262 1439 aa24.7■■□□□ 1.54
LDLR-206ENST00000557958 AKNAQ7Z591 1439 aa24.68■■□□□ 1.54
LDLR-206ENST00000557958 TTC37Q6PGP7 1564 aa24.68■■□□□ 1.54
LDLR-206ENST00000557958 CHIC2Q9UKJ5 165 aa24.68■■□□□ 1.54
LDLR-206ENST00000557958 CDC42BPAQ5VT25 1732 aa24.66■■□□□ 1.54
LDLR-206ENST00000557958 NAIPQ13075 1403 aa24.64■■□□□ 1.53
LDLR-206ENST00000557958 CAMSAP2Q08AD1 1489 aa24.62■■□□□ 1.53
LDLR-206ENST00000557958 ARHGAP5Q13017 1502 aa24.62■■□□□ 1.53
LDLR-206ENST00000557958 HNRNPMP52272 730 aaKnown RBP eCLIP24.61■■□□□ 1.53
LDLR-206ENST00000557958 DNMT1P26358 1616 aaKnown RBP24.6■■□□□ 1.53
LDLR-206ENST00000557958 ACIN1Q9UKV3 1341 aaKnown RBP24.6■■□□□ 1.53
LDLR-206ENST00000557958 MAPKBP1O60336 1514 aa24.59■■□□□ 1.53
LDLR-206ENST00000557958 DAPK1P53355 1430 aa24.59■■□□□ 1.53
LDLR-206ENST00000557958 GCC2Q8IWJ2 1684 aa24.59■■□□□ 1.53
LDLR-206ENST00000557958 EFCAB2Q5VUJ9 269 aa24.58■■□□□ 1.53
LDLR-206ENST00000557958 PLCH2O75038 1416 aa24.58■■□□□ 1.53
LDLR-206ENST00000557958 CDC42BPBQ9Y5S2 1711 aa24.57■■□□□ 1.52
LDLR-206ENST00000557958 ROCK1Q13464 1354 aa24.57■■□□□ 1.52
LDLR-206ENST00000557958 PREX2Q70Z35 1606 aa24.57■■□□□ 1.52
LDLR-206ENST00000557958 RRP7BPQ9NSQ0 103 aa24.57■■□□□ 1.52
LDLR-206ENST00000557958 MYO5CQ9NQX4 1742 aa24.57■■□□□ 1.52
LDLR-206ENST00000557958 ABCC5O15440 1437 aa24.53■■□□□ 1.52
LDLR-206ENST00000557958 FAM69CQ0P6D2 419 aa24.51■■□□□ 1.51
LDLR-206ENST00000557958 DNAJC5Q9H3Z4 198 aa24.51■■□□□ 1.51
LDLR-206ENST00000557958 ABCA9Q8IUA7 1624 aa24.51■■□□□ 1.51
LDLR-206ENST00000557958 SAMD9LQ8IVG5 1584 aa24.5■■□□□ 1.51
LDLR-206ENST00000557958 CD109Q6YHK3 1445 aa24.5■■□□□ 1.51
LDLR-206ENST00000557958 TSPY4P0CV99 314 aa24.49■■□□□ 1.51
LDLR-206ENST00000557958 TSPY10P0CW01 314 aa24.49■■□□□ 1.51
LDLR-206ENST00000557958 ZNF316A6NFI3 1004 aaPredicted RBP24.48■■□□□ 1.51
LDLR-206ENST00000557958 TIMELESSQ9UNS1 1208 aa24.46■■□□□ 1.51
LDLR-206ENST00000557958 FANCAO15360 1455 aa24.45■■□□□ 1.5
LDLR-206ENST00000557958 SYCP2Q9BX26 1530 aa24.44■■□□□ 1.5
LDLR-206ENST00000557958 CROCC2H7BZ55 1655 aa24.42■■□□□ 1.5
LDLR-206ENST00000557958 ADGBQ8N7X0 1667 aa24.42■■□□□ 1.5
LDLR-206ENST00000557958 RSPH4AQ5TD94 716 aa24.42■■□□□ 1.5
LDLR-206ENST00000557958 MBD5Q9P267 1494 aa24.42■■□□□ 1.5
LDLR-206ENST00000557958 PLEKHH2Q8IVE3 1493 aa24.41■■□□□ 1.5
LDLR-206ENST00000557958 ADGRL2O95490 1459 aa24.41■■□□□ 1.5
LDLR-206ENST00000557958 SHANK2Q9UPX8 1470 aa24.41■■□□□ 1.5
LDLR-206ENST00000557958 ARAP3Q8WWN8 1544 aa24.38■■□□□ 1.49
LDLR-206ENST00000557958 ARHGEF12Q9NZN5 1544 aa24.38■■□□□ 1.49
LDLR-206ENST00000557958 CCDC141Q6ZP82 1450 aa24.38■■□□□ 1.49
LDLR-206ENST00000557958 KIAA1107Q9UPP5 1409 aa24.38■■□□□ 1.49
LDLR-206ENST00000557958 AFAP1Q8N556 730 aa24.38■■□□□ 1.49
LDLR-206ENST00000557958 MYT1LQ9UL68 1186 aa24.38■■□□□ 1.49
LDLR-206ENST00000557958 ANKRD30AQ9BXX3 1397 aa24.38■■□□□ 1.49
LDLR-206ENST00000557958 C9orf84Q5VXU9 1444 aa24.37■■□□□ 1.49
LDLR-206ENST00000557958 ARHGEF5Q12774 1597 aa24.36■■□□□ 1.49
LDLR-206ENST00000557958 TRIM52Q96A61 297 aa24.36■■□□□ 1.49
LDLR-206ENST00000557958 NCOA1Q15788 1441 aa24.36■■□□□ 1.49
LDLR-206ENST00000557958 SCAPERQ9BY12 1400 aa24.36■■□□□ 1.49
LDLR-206ENST00000557958 ADGRL1O94910 1474 aa24.35■■□□□ 1.49
LDLR-206ENST00000557958 TRAPPC8Q9Y2L5 1435 aa24.34■■□□□ 1.49
LDLR-206ENST00000557958 ABCC1P33527 1531 aa24.34■■□□□ 1.49
LDLR-206ENST00000557958 DIP2BQ9P265 1576 aa24.34■■□□□ 1.49
LDLR-206ENST00000557958 DIEXFQ68CQ4 756 aaKnown RBP24.33■■□□□ 1.49
LDLR-206ENST00000557958 KDM6BO15054 1643 aa24.33■■□□□ 1.49
LDLR-206ENST00000557958 NEUROD1Q13562 356 aa24.32■■□□□ 1.48
LDLR-206ENST00000557958 GLI2P10070 1586 aa24.31■■□□□ 1.48
LDLR-206ENST00000557958 SIN3AQ96ST3 1273 aa24.31■■□□□ 1.48
LDLR-206ENST00000557958 SPAG9O60271 1321 aaKnown RBP24.3■■□□□ 1.48
LDLR-206ENST00000557958 MAP3K4Q9Y6R4 1608 aa24.29■■□□□ 1.48
LDLR-206ENST00000557958 TRHP20396 242 aaPredicted RBP24.27■■□□□ 1.48
LDLR-206ENST00000557958 TONSLQ96HA7 1378 aa24.26■■□□□ 1.47
LDLR-206ENST00000557958 TSPOAP1O95153 1857 aa24.26■■□□□ 1.47
LDLR-206ENST00000557958 KIF15Q9NS87 1388 aa24.25■■□□□ 1.47
LDLR-206ENST00000557958 MPHOSPH9Q99550 1183 aa24.25■■□□□ 1.47
LDLR-206ENST00000557958 CFAP74Q9C0B2 1584 aa24.24■■□□□ 1.47
LDLR-206ENST00000557958 RAPGEF3O95398 923 aa24.24■■□□□ 1.47
LDLR-206ENST00000557958 ANKRD50Q9ULJ7 1429 aa24.22■■□□□ 1.47
LDLR-206ENST00000557958 NEO1Q92859 1461 aa24.22■■□□□ 1.47
LDLR-206ENST00000557958 DENND4BO75064 1496 aaPredicted RBP24.18■■□□□ 1.46
LDLR-206ENST00000557958 MAST1Q9Y2H9 1570 aa24.18■■□□□ 1.46
LDLR-206ENST00000557958 KIF13AQ9H1H9 1805 aa24.18■■□□□ 1.46
LDLR-206ENST00000557958 ZNF518AQ6AHZ1 1483 aa24.16■■□□□ 1.46
LDLR-206ENST00000557958 SLC4A1APQ9BWU0 796 aaKnown RBP24.16■■□□□ 1.46
LDLR-206ENST00000557958 PPP1R15AO75807 674 aaPredicted RBP24.15■■□□□ 1.46
LDLR-206ENST00000557958 TEX14Q8IWB6 1497 aa24.15■■□□□ 1.46
LDLR-206ENST00000557958 POGZQ7Z3K3 1410 aa24.14■■□□□ 1.46
LDLR-206ENST00000557958 RTEL1-TNFRSF6BF6WH68 1400 aa24.13■■□□□ 1.45
LDLR-206ENST00000557958 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.12■■□□□ 1.45
LDLR-206ENST00000557958 PZPP20742 1482 aa24.11■■□□□ 1.45
LDLR-206ENST00000557958 ATP7AQ04656 1500 aa24.11■■□□□ 1.45
LDLR-206ENST00000557958 PPRC1Q5VV67 1664 aaKnown RBP24.1■■□□□ 1.45
LDLR-206ENST00000557958 ZFYVE16Q7Z3T8 1539 aa24.1■■□□□ 1.45
LDLR-206ENST00000557958 PLXNC1O60486 1568 aa24.09■■□□□ 1.45
LDLR-206ENST00000557958 ANKRD30BQ9BXX2 1392 aa24.09■■□□□ 1.45
LDLR-206ENST00000557958 KDM5DQ9BY66 1539 aa24.08■■□□□ 1.44
LDLR-206ENST00000557958 DUOX2Q9NRD8 1548 aa24.07■■□□□ 1.44
LDLR-206ENST00000557958 NUP155O75694 1391 aa24.07■■□□□ 1.44
LDLR-206ENST00000557958 FOXD1Q16676 465 aa24.07■■□□□ 1.44
LDLR-206ENST00000557958 INO80Q9ULG1 1556 aaPredicted RBP24.05■■□□□ 1.44
LDLR-206ENST00000557958 RPRD2Q5VT52 1461 aaKnown RBP24.04■■□□□ 1.44
LDLR-206ENST00000557958 KDM5CP41229 1560 aa24.02■■□□□ 1.44
LDLR-206ENST00000557958 KIF3BO15066 747 aa24.02■■□□□ 1.44
LDLR-206ENST00000557958 KIDINS220Q9ULH0 1771 aa24.01■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms