RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 EFCAB2Q5VUJ9 269 aa23.82■■□□□ 1.4
SHMT2-235ENST00000557740 MYO5CQ9NQX4 1742 aa23.81■■□□□ 1.4
SHMT2-235ENST00000557740 BCORL1Q5H9F3 1711 aa23.81■■□□□ 1.4
SHMT2-235ENST00000557740 PTPRMP28827 1452 aa23.81■■□□□ 1.4
SHMT2-235ENST00000557740 MAGI2Q86UL8 1455 aa23.81■■□□□ 1.4
SHMT2-235ENST00000557740 YEATS2Q9ULM3 1422 aa23.79■■□□□ 1.4
SHMT2-235ENST00000557740 LRRIQ1Q96JM4 1722 aa23.78■■□□□ 1.4
SHMT2-235ENST00000557740 ARHGAP5Q13017 1502 aa23.78■■□□□ 1.4
SHMT2-235ENST00000557740 MADDQ8WXG6 1647 aa23.77■■□□□ 1.4
SHMT2-235ENST00000557740 FYCO1Q9BQS8 1478 aa23.76■■□□□ 1.39
SHMT2-235ENST00000557740 ZNF518AQ6AHZ1 1483 aa23.71■■□□□ 1.39
SHMT2-235ENST00000557740 RIMS1Q86UR5 1692 aaKnown RBP23.67■■□□□ 1.38
SHMT2-235ENST00000557740 ATP10AO60312 1499 aa23.67■■□□□ 1.38
SHMT2-235ENST00000557740 C9orf84Q5VXU9 1444 aa23.67■■□□□ 1.38
SHMT2-235ENST00000557740 PREX2Q70Z35 1606 aa23.66■■□□□ 1.38
SHMT2-235ENST00000557740 MLECQ14165 292 aa23.65■■□□□ 1.38
SHMT2-235ENST00000557740 KDM5CP41229 1560 aa23.65■■□□□ 1.38
SHMT2-235ENST00000557740 SIGLEC1Q9BZZ2 1709 aa23.64■■□□□ 1.38
SHMT2-235ENST00000557740 AFAP1Q8N556 730 aa23.64■■□□□ 1.37
SHMT2-235ENST00000557740 MYT1LQ9UL68 1186 aa23.63■■□□□ 1.37
SHMT2-235ENST00000557740 CDC42BPBQ9Y5S2 1711 aa23.62■■□□□ 1.37
SHMT2-235ENST00000557740 ABCC1P33527 1531 aa23.6■■□□□ 1.37
SHMT2-235ENST00000557740 PLPPR3Q6T4P5 718 aa23.6■■□□□ 1.37
SHMT2-235ENST00000557740 LMTK3Q96Q04 1460 aa23.56■■□□□ 1.36
SHMT2-235ENST00000557740 TRAPPC8Q9Y2L5 1435 aa23.56■■□□□ 1.36
SHMT2-235ENST00000557740 MLH3Q9UHC1 1453 aa23.56■■□□□ 1.36
SHMT2-235ENST00000557740 FER1L4A9Z1Z3 1794 aa23.55■■□□□ 1.36
SHMT2-235ENST00000557740 ARHGEF12Q9NZN5 1544 aa23.55■■□□□ 1.36
SHMT2-235ENST00000557740 DIP2CQ9Y2E4 1556 aa23.55■■□□□ 1.36
SHMT2-235ENST00000557740 MTUS2Q5JR59 1369 aa23.54■■□□□ 1.36
SHMT2-235ENST00000557740 CDC42BPAQ5VT25 1732 aa23.54■■□□□ 1.36
SHMT2-235ENST00000557740 CEP162Q5TB80 1403 aa23.54■■□□□ 1.36
SHMT2-235ENST00000557740 ZNF777Q9ULD5 760 aaPredicted RBP23.54■■□□□ 1.36
SHMT2-235ENST00000557740 ITSN2Q9NZM3 1697 aa23.54■■□□□ 1.36
SHMT2-235ENST00000557740 ILDR1Q86SU0 546 aaPredicted RBP23.53■■□□□ 1.36
SHMT2-235ENST00000557740 GPATCH8Q9UKJ3 1502 aaKnown RBP23.51■■□□□ 1.35
SHMT2-235ENST00000557740 ABCA6Q8N139 1617 aa23.51■■□□□ 1.35
SHMT2-235ENST00000557740 CCNB3Q8WWL7 1395 aa23.51■■□□□ 1.35
SHMT2-235ENST00000557740 REREQ9P2R6 1566 aa23.5■■□□□ 1.35
SHMT2-235ENST00000557740 SYCP2Q9BX26 1530 aa23.48■■□□□ 1.35
SHMT2-235ENST00000557740 SAMD9LQ8IVG5 1584 aa23.48■■□□□ 1.35
SHMT2-235ENST00000557740 CFDP1Q9UEE9 299 aaPredicted RBP23.47■■□□□ 1.35
SHMT2-235ENST00000557740 EHBP1L1Q8N3D4 1523 aa23.45■■□□□ 1.34
SHMT2-235ENST00000557740 PLEKHH2Q8IVE3 1493 aa23.45■■□□□ 1.34
SHMT2-235ENST00000557740 HSPA2P54652 639 aa23.44■■□□□ 1.34
SHMT2-235ENST00000557740 AGLP35573 1532 aa23.43■■□□□ 1.34
SHMT2-235ENST00000557740 KIAA1107Q9UPP5 1409 aa23.42■■□□□ 1.34
SHMT2-235ENST00000557740 KIDINS220Q9ULH0 1771 aa23.42■■□□□ 1.34
SHMT2-235ENST00000557740 SPAG9O60271 1321 aaKnown RBP23.42■■□□□ 1.34
SHMT2-235ENST00000557740 HNRNPMP52272 730 aaKnown RBP eCLIP23.42■■□□□ 1.34
SHMT2-235ENST00000557740 CEBPAP49715 358 aaPredicted RBP23.4■■□□□ 1.34
SHMT2-235ENST00000557740 ESF1Q9H501 851 aaKnown RBP23.4■■□□□ 1.34
SHMT2-235ENST00000557740 TIAM1Q13009 1591 aa23.38■■□□□ 1.33
SHMT2-235ENST00000557740 ATP7AQ04656 1500 aa23.36■■□□□ 1.33
SHMT2-235ENST00000557740 PREX1Q8TCU6 1659 aa23.35■■□□□ 1.33
SHMT2-235ENST00000557740 INO80Q9ULG1 1556 aaPredicted RBP23.33■■□□□ 1.33
SHMT2-235ENST00000557740 UHRF1BP1Q6BDS2 1440 aa23.33■■□□□ 1.32
SHMT2-235ENST00000557740 CNTLNQ9NXG0 1405 aa23.33■■□□□ 1.32
SHMT2-235ENST00000557740 ZNF644Q9H582 1327 aaPredicted RBP23.31■■□□□ 1.32
SHMT2-235ENST00000557740 LOC105371045A0A1W2PR82 267 aa23.3■■□□□ 1.32
SHMT2-235ENST00000557740 VPS8Q8N3P4 1428 aa23.29■■□□□ 1.32
SHMT2-235ENST00000557740 A2MP01023 1474 aa23.29■■□□□ 1.32
SHMT2-235ENST00000557740 NCOA2Q15596 1464 aa23.29■■□□□ 1.32
SHMT2-235ENST00000557740 FBXO41Q8TF61 875 aa23.28■■□□□ 1.32
SHMT2-235ENST00000557740 C3P01024 1663 aa23.28■■□□□ 1.32
SHMT2-235ENST00000557740 SUPT6HQ7KZ85 1726 aaKnown RBP23.28■■□□□ 1.32
SHMT2-235ENST00000557740 PLXNC1O60486 1568 aa23.27■■□□□ 1.32
SHMT2-235ENST00000557740 MBD5Q9P267 1494 aa23.25■■□□□ 1.31
SHMT2-235ENST00000557740 CAMSAP2Q08AD1 1489 aa23.22■■□□□ 1.31
SHMT2-235ENST00000557740 SETD1BQ9UPS6 1966 aaKnown RBP23.21■■□□□ 1.31
SHMT2-235ENST00000557740 RTEL1-TNFRSF6BF6WH68 1400 aa23.21■■□□□ 1.31
SHMT2-235ENST00000557740 CCDC141Q6ZP82 1450 aa23.21■■□□□ 1.31
SHMT2-235ENST00000557740 ADGBQ8N7X0 1667 aa23.2■■□□□ 1.3
SHMT2-235ENST00000557740 MROH2AA6NES4 1674 aa23.19■■□□□ 1.3
SHMT2-235ENST00000557740 NPATQ14207 1427 aa23.19■■□□□ 1.3
SHMT2-235ENST00000557740 LRRC9Q6ZRR7 1453 aa23.18■■□□□ 1.3
SHMT2-235ENST00000557740 ZMYM3Q14202 1370 aa23.18■■□□□ 1.3
SHMT2-235ENST00000557740 GGT6Q6P531 493 aa23.18■■□□□ 1.3
SHMT2-235ENST00000557740 DMRT2Q9Y5R5 561 aa23.17■■□□□ 1.3
SHMT2-235ENST00000557740 RSPH4AQ5TD94 716 aa23.15■■□□□ 1.3
SHMT2-235ENST00000557740 DHX29Q7Z478 1369 aaKnown RBP23.14■■□□□ 1.29
SHMT2-235ENST00000557740 CLTCQ00610 1675 aaKnown RBP23.13■■□□□ 1.29
SHMT2-235ENST00000557740 PPP6R1Q9UPN7 881 aa23.13■■□□□ 1.29
SHMT2-235ENST00000557740 MAP3K1Q13233 1512 aa23.13■■□□□ 1.29
SHMT2-235ENST00000557740 CERKQ8TCT0 537 aa23.11■■□□□ 1.29
SHMT2-235ENST00000557740 STRCQ7RTU9 1775 aa23.11■■□□□ 1.29
SHMT2-235ENST00000557740 ARHGEF5Q12774 1597 aa23.1■■□□□ 1.29
SHMT2-235ENST00000557740 TSPY4P0CV99 314 aa23.08■■□□□ 1.29
SHMT2-235ENST00000557740 TSPY10P0CW01 314 aa23.08■■□□□ 1.29
SHMT2-235ENST00000557740 KANK4Q5T7N3 995 aaPredicted RBP23.08■■□□□ 1.29
SHMT2-235ENST00000557740 PTPRKQ15262 1439 aa23.08■■□□□ 1.28
SHMT2-235ENST00000557740 NCOA1Q15788 1441 aa23.08■■□□□ 1.28
SHMT2-235ENST00000557740 KIF3BO15066 747 aa23.07■■□□□ 1.28
SHMT2-235ENST00000557740 PTPRTO14522 1441 aa23.07■■□□□ 1.28
SHMT2-235ENST00000557740 MYOM3Q5VTT5 1437 aa23.06■■□□□ 1.28
SHMT2-235ENST00000557740 MYO3AQ8NEV4 1616 aa23.04■■□□□ 1.28
SHMT2-235ENST00000557740 CAMSAP1Q5T5Y3 1602 aa23.04■■□□□ 1.28
SHMT2-235ENST00000557740 MIA2Q96PC5 1412 aa23.03■■□□□ 1.28
SHMT2-235ENST00000557740 APLP2Q06481 763 aa23.03■■□□□ 1.28
SHMT2-235ENST00000557740 KDM5DQ9BY66 1539 aa23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 200.7 ms