RNA–Protein interactions for RNA: ENST00000557658.5

VIPAS39-211, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-211ENST00000557658 FAM9BQ8IZU0 186 aa16.22■□□□□ 0.19
VIPAS39-211ENST00000557658 C11orf95C9JLR9 678 aaPredicted RBP16.21■□□□□ 0.18
VIPAS39-211ENST00000557658 POLR1AO95602 1720 aaPredicted RBP16.21■□□□□ 0.18
VIPAS39-211ENST00000557658 RPRD2Q5VT52 1461 aaKnown RBP16.2■□□□□ 0.18
VIPAS39-211ENST00000557658 ANKRD30BQ9BXX2 1392 aa16.18■□□□□ 0.18
VIPAS39-211ENST00000557658 IQGAP2Q13576 1575 aa16.17■□□□□ 0.18
VIPAS39-211ENST00000557658 FOXD1Q16676 465 aa16.17■□□□□ 0.18
VIPAS39-211ENST00000557658 ROCK1Q13464 1354 aa16.17■□□□□ 0.18
VIPAS39-211ENST00000557658 CDK13Q14004 1512 aaKnown RBP16.17■□□□□ 0.18
VIPAS39-211ENST00000557658 TEX14Q8IWB6 1497 aa16.16■□□□□ 0.18
VIPAS39-211ENST00000557658 PDS5BQ9NTI5 1447 aa16.16■□□□□ 0.18
VIPAS39-211ENST00000557658 WDR62O43379 1518 aa16.15■□□□□ 0.18
VIPAS39-211ENST00000557658 NBPF8Q3BBV2 869 aa16.15■□□□□ 0.18
VIPAS39-211ENST00000557658 TARBP1Q13395 1621 aaKnown RBP16.15■□□□□ 0.18
VIPAS39-211ENST00000557658 DAPK1P53355 1430 aa16.14■□□□□ 0.17
VIPAS39-211ENST00000557658 KIF7Q2M1P5 1343 aa16.14■□□□□ 0.17
VIPAS39-211ENST00000557658 SPATA31E1Q6ZUB1 1445 aa16.14■□□□□ 0.17
VIPAS39-211ENST00000557658 PBRM1Q86U86 1689 aa16.14■□□□□ 0.17
VIPAS39-211ENST00000557658 B4GALNT3Q6L9W6 998 aa16.13■□□□□ 0.17
VIPAS39-211ENST00000557658 DNMT1P26358 1616 aaKnown RBP16.13■□□□□ 0.17
VIPAS39-211ENST00000557658 MYT1LQ9UL68 1186 aa16.12■□□□□ 0.17
VIPAS39-211ENST00000557658 SLC4A1APQ9BWU0 796 aaKnown RBP16.1■□□□□ 0.17
VIPAS39-211ENST00000557658 ABCC5O15440 1437 aa16.1■□□□□ 0.17
VIPAS39-211ENST00000557658 SMG6Q86US8 1419 aaKnown RBP16.08■□□□□ 0.16
VIPAS39-211ENST00000557658 ADAMTS12P58397 1594 aa16.08■□□□□ 0.16
VIPAS39-211ENST00000557658 ARID3CA6NKF2 412 aa16.07■□□□□ 0.16
VIPAS39-211ENST00000557658 DHX29Q7Z478 1369 aaKnown RBP16.03■□□□□ 0.16
VIPAS39-211ENST00000557658 NUDCQ9Y266 331 aa16.03■□□□□ 0.16
VIPAS39-211ENST00000557658 PZPP20742 1482 aa16.02■□□□□ 0.16
VIPAS39-211ENST00000557658 MBD5Q9P267 1494 aa16.02■□□□□ 0.15
VIPAS39-211ENST00000557658 ZNF644Q9H582 1327 aaPredicted RBP16.01■□□□□ 0.15
VIPAS39-211ENST00000557658 ARID4BQ4LE39 1312 aaPredicted RBP16■□□□□ 0.15
VIPAS39-211ENST00000557658 RNF123Q5XPI4 1314 aa16■□□□□ 0.15
VIPAS39-211ENST00000557658 USP47Q96K76 1375 aa16■□□□□ 0.15
VIPAS39-211ENST00000557658 ADGBQ8N7X0 1667 aa16■□□□□ 0.15
VIPAS39-211ENST00000557658 BCORL1Q5H9F3 1711 aa15.99■□□□□ 0.15
VIPAS39-211ENST00000557658 NOP58Q9Y2X3 529 aaKnown RBP15.99■□□□□ 0.15
VIPAS39-211ENST00000557658 KIAA0556O60303 1618 aa15.99■□□□□ 0.15
VIPAS39-211ENST00000557658 KIF14Q15058 1648 aa15.99■□□□□ 0.15
VIPAS39-211ENST00000557658 NUP153P49790 1475 aaKnown RBP15.99■□□□□ 0.15
VIPAS39-211ENST00000557658 KIAA1107Q9UPP5 1409 aa15.98■□□□□ 0.15
VIPAS39-211ENST00000557658 RAPGEF6Q8TEU7 1601 aa15.98■□□□□ 0.15
VIPAS39-211ENST00000557658 CCDC136Q96JN2 1154 aa15.97■□□□□ 0.15
VIPAS39-211ENST00000557658 POLR3GLQ9BT43 218 aa15.97■□□□□ 0.15
VIPAS39-211ENST00000557658 KDM5CP41229 1560 aa15.97■□□□□ 0.15
VIPAS39-211ENST00000557658 ITSN2Q9NZM3 1697 aa15.96■□□□□ 0.15
VIPAS39-211ENST00000557658 CAMSAP2Q08AD1 1489 aa15.96■□□□□ 0.15
VIPAS39-211ENST00000557658 ROCK2O75116 1388 aaKnown RBP15.96■□□□□ 0.15
VIPAS39-211ENST00000557658 DISP1Q96F81 1524 aa15.96■□□□□ 0.15
VIPAS39-211ENST00000557658 KIAA0586Q9BVV6 1533 aa15.95■□□□□ 0.14
VIPAS39-211ENST00000557658 CNGB1Q14028 1251 aaPredicted RBP15.94■□□□□ 0.14
VIPAS39-211ENST00000557658 ZNF326Q5BKZ1 582 aaKnown RBP15.94■□□□□ 0.14
VIPAS39-211ENST00000557658 ADGRL2O95490 1459 aa15.93■□□□□ 0.14
VIPAS39-211ENST00000557658 DEKP35659 375 aaKnown RBP15.93■□□□□ 0.14
VIPAS39-211ENST00000557658 CFDP1Q9UEE9 299 aaPredicted RBP15.93■□□□□ 0.14
VIPAS39-211ENST00000557658 TROQ12816 1431 aaPredicted RBP15.93■□□□□ 0.14
VIPAS39-211ENST00000557658 PNISRQ8TF01 805 aaKnown RBP15.92■□□□□ 0.14
VIPAS39-211ENST00000557658 CROCC2H7BZ55 1655 aa15.92■□□□□ 0.14
VIPAS39-211ENST00000557658 ANP32AP39687 249 aaKnown RBP15.92■□□□□ 0.14
VIPAS39-211ENST00000557658 TMC1Q8TDI8 760 aa15.92■□□□□ 0.14
VIPAS39-211ENST00000557658 PKD2Q13563 968 aa15.91■□□□□ 0.14
VIPAS39-211ENST00000557658 UHRF1BP1Q6BDS2 1440 aa15.91■□□□□ 0.14
VIPAS39-211ENST00000557658 RALGAPBQ86X10 1494 aa15.91■□□□□ 0.14
VIPAS39-211ENST00000557658 ANKRD30AQ9BXX3 1397 aa15.9■□□□□ 0.14
VIPAS39-211ENST00000557658 PRG4Q92954 1404 aaPredicted RBP15.9■□□□□ 0.14
VIPAS39-211ENST00000557658 KIF15Q9NS87 1388 aa15.9■□□□□ 0.14
VIPAS39-211ENST00000557658 MRC2Q9UBG0 1479 aa15.89■□□□□ 0.13
VIPAS39-211ENST00000557658 PAK3O75914 559 aaPredicted RBP15.89■□□□□ 0.13
VIPAS39-211ENST00000557658 GPATCH8Q9UKJ3 1502 aaKnown RBP15.89■□□□□ 0.13
VIPAS39-211ENST00000557658 IPO9Q96P70 1041 aaKnown RBP15.88■□□□□ 0.13
VIPAS39-211ENST00000557658 ADCY10Q96PN6 1610 aa15.88■□□□□ 0.13
VIPAS39-211ENST00000557658 KTN1Q86UP2 1357 aaKnown RBP15.88■□□□□ 0.13
VIPAS39-211ENST00000557658 ARHGEF12Q9NZN5 1544 aa15.87■□□□□ 0.13
VIPAS39-211ENST00000557658 CARD11Q9BXL7 1154 aa15.86■□□□□ 0.13
VIPAS39-211ENST00000557658 BRD4O60885 1362 aaPredicted RBP15.86■□□□□ 0.13
VIPAS39-211ENST00000557658 LRPPRCP42704 1394 aaKnown RBP15.86■□□□□ 0.13
VIPAS39-211ENST00000557658 ANKRD50Q9ULJ7 1429 aa15.86■□□□□ 0.13
VIPAS39-211ENST00000557658 ZNF777Q9ULD5 760 aaPredicted RBP15.86■□□□□ 0.13
VIPAS39-211ENST00000557658 NBR1Q14596 966 aa15.85■□□□□ 0.13
VIPAS39-211ENST00000557658 IFT140Q96RY7 1462 aa15.85■□□□□ 0.13
VIPAS39-211ENST00000557658 DNAJC5BQ9UF47 199 aa15.85■□□□□ 0.13
VIPAS39-211ENST00000557658 MYBBP1AQ9BQG0 1328 aaKnown RBP15.85■□□□□ 0.13
VIPAS39-211ENST00000557658 RALBP1Q15311 655 aa15.84■□□□□ 0.13
VIPAS39-211ENST00000557658 ZBTB47Q9UFB7 747 aaPredicted RBP15.84■□□□□ 0.13
VIPAS39-211ENST00000557658 ZNF608Q9ULD9 1512 aaPredicted RBP15.83■□□□□ 0.13
VIPAS39-211ENST00000557658 GRIN2AQ12879 1464 aa15.83■□□□□ 0.12
VIPAS39-211ENST00000557658 NUP155O75694 1391 aa15.82■□□□□ 0.12
VIPAS39-211ENST00000557658 SENP3-EIF4A1A0A087X0R7 540 aa15.82■□□□□ 0.12
VIPAS39-211ENST00000557658 E9PCH4 1651 aa15.81■□□□□ 0.12
VIPAS39-211ENST00000557658 RRP1P56182 461 aaKnown RBP15.81■□□□□ 0.12
VIPAS39-211ENST00000557658 SHANK2Q9UPX8 1470 aa15.8■□□□□ 0.12
VIPAS39-211ENST00000557658 ST20-MTHFSA0A0A6YYL1 179 aa15.8■□□□□ 0.12
VIPAS39-211ENST00000557658 KDM5DQ9BY66 1539 aa15.8■□□□□ 0.12
VIPAS39-211ENST00000557658 RTL5Q5HYW3 569 aaPredicted RBP15.8■□□□□ 0.12
VIPAS39-211ENST00000557658 PLB1Q6P1J6 1458 aa15.79■□□□□ 0.12
VIPAS39-211ENST00000557658 CEP170Q5SW79 1584 aa15.78■□□□□ 0.12
VIPAS39-211ENST00000557658 CDC42BPAQ5VT25 1732 aa15.78■□□□□ 0.12
VIPAS39-211ENST00000557658 C9orf84Q5VXU9 1444 aa15.78■□□□□ 0.12
VIPAS39-211ENST00000557658 TCERG1O14776 1098 aaKnown RBP15.77■□□□□ 0.12
VIPAS39-211ENST00000557658 PDE3BQ13370 1112 aa15.77■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms