RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 ZNF777Q9ULD5 760 aaPredicted RBP17.91■□□□□ 0.46
CCDC88C-212ENST00000556767 SUPT6HQ7KZ85 1726 aaKnown RBP17.91■□□□□ 0.46
CCDC88C-212ENST00000556767 ARAP3Q8WWN8 1544 aa17.91■□□□□ 0.46
CCDC88C-212ENST00000556767 PREX2Q70Z35 1606 aa17.9■□□□□ 0.46
CCDC88C-212ENST00000556767 CDC42BPAQ5VT25 1732 aa17.9■□□□□ 0.46
CCDC88C-212ENST00000556767 CDC42BPBQ9Y5S2 1711 aa17.89■□□□□ 0.46
CCDC88C-212ENST00000556767 RAPGEF3O95398 923 aa17.89■□□□□ 0.45
CCDC88C-212ENST00000556767 ADGRL1O94910 1474 aa17.88■□□□□ 0.45
CCDC88C-212ENST00000556767 NCOA2Q15596 1464 aa17.88■□□□□ 0.45
CCDC88C-212ENST00000556767 GPATCH8Q9UKJ3 1502 aaKnown RBP17.88■□□□□ 0.45
CCDC88C-212ENST00000556767 CFDP1Q9UEE9 299 aaPredicted RBP17.88■□□□□ 0.45
CCDC88C-212ENST00000556767 SCAPERQ9BY12 1400 aa17.87■□□□□ 0.45
CCDC88C-212ENST00000556767 DENND4BO75064 1496 aaPredicted RBP17.87■□□□□ 0.45
CCDC88C-212ENST00000556767 ITSN2Q9NZM3 1697 aa17.84■□□□□ 0.45
CCDC88C-212ENST00000556767 FRMPD1Q5SYB0 1578 aa17.8■□□□□ 0.44
CCDC88C-212ENST00000556767 MYT1LQ9UL68 1186 aa17.8■□□□□ 0.44
CCDC88C-212ENST00000556767 RICTORQ6R327 1708 aa17.8■□□□□ 0.44
CCDC88C-212ENST00000556767 SAMD9LQ8IVG5 1584 aa17.79■□□□□ 0.44
CCDC88C-212ENST00000556767 POGZQ7Z3K3 1410 aa17.79■□□□□ 0.44
CCDC88C-212ENST00000556767 ABCC1P33527 1531 aa17.78■□□□□ 0.44
CCDC88C-212ENST00000556767 PPARGC1BQ86YN6 1023 aaKnown RBP17.78■□□□□ 0.44
CCDC88C-212ENST00000556767 AFAP1Q8N556 730 aa17.78■□□□□ 0.44
CCDC88C-212ENST00000556767 ZNF644Q9H582 1327 aaPredicted RBP17.77■□□□□ 0.44
CCDC88C-212ENST00000556767 HNRNPMP52272 730 aaKnown RBP eCLIP17.77■□□□□ 0.44
CCDC88C-212ENST00000556767 PLEKHH2Q8IVE3 1493 aa17.76■□□□□ 0.43
CCDC88C-212ENST00000556767 SYCP2Q9BX26 1530 aa17.76■□□□□ 0.43
CCDC88C-212ENST00000556767 ARHGEF12Q9NZN5 1544 aa17.76■□□□□ 0.43
CCDC88C-212ENST00000556767 ZNF518AQ6AHZ1 1483 aa17.75■□□□□ 0.43
CCDC88C-212ENST00000556767 MYOM3Q5VTT5 1437 aa17.74■□□□□ 0.43
CCDC88C-212ENST00000556767 TRAPPC8Q9Y2L5 1435 aa17.74■□□□□ 0.43
CCDC88C-212ENST00000556767 KIAA1107Q9UPP5 1409 aa17.72■□□□□ 0.43
CCDC88C-212ENST00000556767 ZMYM4Q5VZL5 1548 aa17.72■□□□□ 0.43
CCDC88C-212ENST00000556767 CAMSAP2Q08AD1 1489 aa17.72■□□□□ 0.43
CCDC88C-212ENST00000556767 ZFYVE16Q7Z3T8 1539 aa17.72■□□□□ 0.43
CCDC88C-212ENST00000556767 MAGI2Q86UL8 1455 aa17.7■□□□□ 0.42
CCDC88C-212ENST00000556767 MIA2Q96PC5 1412 aa17.7■□□□□ 0.42
CCDC88C-212ENST00000556767 YEATS2Q9ULM3 1422 aa17.7■□□□□ 0.42
CCDC88C-212ENST00000556767 KDM5CP41229 1560 aa17.69■□□□□ 0.42
CCDC88C-212ENST00000556767 ARID4BQ4LE39 1312 aaPredicted RBP17.69■□□□□ 0.42
CCDC88C-212ENST00000556767 ARHGEF40Q8TER5 1519 aa17.68■□□□□ 0.42
CCDC88C-212ENST00000556767 HECW2Q9P2P5 1572 aa17.68■□□□□ 0.42
CCDC88C-212ENST00000556767 SPAG9O60271 1321 aaKnown RBP17.68■□□□□ 0.42
CCDC88C-212ENST00000556767 FGD6Q6ZV73 1430 aa17.65■□□□□ 0.42
CCDC88C-212ENST00000556767 MBD5Q9P267 1494 aa17.65■□□□□ 0.42
CCDC88C-212ENST00000556767 MLH3Q9UHC1 1453 aa17.65■□□□□ 0.42
CCDC88C-212ENST00000556767 PTPN23Q9H3S7 1636 aa17.65■□□□□ 0.42
CCDC88C-212ENST00000556767 RSPH4AQ5TD94 716 aa17.64■□□□□ 0.41
CCDC88C-212ENST00000556767 ATP10AO60312 1499 aa17.63■□□□□ 0.41
CCDC88C-212ENST00000556767 CCDC141Q6ZP82 1450 aa17.63■□□□□ 0.41
CCDC88C-212ENST00000556767 FAM50AQ14320 339 aaKnown RBP17.63■□□□□ 0.41
CCDC88C-212ENST00000556767 TSPY4P0CV99 314 aa17.62■□□□□ 0.41
CCDC88C-212ENST00000556767 TSPY10P0CW01 314 aa17.62■□□□□ 0.41
CCDC88C-212ENST00000556767 KIDINS220Q9ULH0 1771 aa17.61■□□□□ 0.41
CCDC88C-212ENST00000556767 C9orf84Q5VXU9 1444 aa17.61■□□□□ 0.41
CCDC88C-212ENST00000556767 ATP7AQ04656 1500 aa17.61■□□□□ 0.41
CCDC88C-212ENST00000556767 ARHGEF5Q12774 1597 aa17.61■□□□□ 0.41
CCDC88C-212ENST00000556767 DIP2CQ9Y2E4 1556 aa17.6■□□□□ 0.41
CCDC88C-212ENST00000556767 ABCA6Q8N139 1617 aa17.6■□□□□ 0.41
CCDC88C-212ENST00000556767 INO80Q9ULG1 1556 aaPredicted RBP17.58■□□□□ 0.41
CCDC88C-212ENST00000556767 TCOF1Q13428 1488 aaKnown RBP17.58■□□□□ 0.41
CCDC88C-212ENST00000556767 MLECQ14165 292 aa17.58■□□□□ 0.4
CCDC88C-212ENST00000556767 KDM4FA0A1W2PPD8 638 aa17.57■□□□□ 0.4
CCDC88C-212ENST00000556767 AEBP2Q6ZN18 517 aaPredicted RBP17.56■□□□□ 0.4
CCDC88C-212ENST00000556767 RTEL1-TNFRSF6BF6WH68 1400 aa17.55■□□□□ 0.4
CCDC88C-212ENST00000556767 SIGLEC1Q9BZZ2 1709 aa17.54■□□□□ 0.4
CCDC88C-212ENST00000556767 ABCC5O15440 1437 aa17.54■□□□□ 0.4
CCDC88C-212ENST00000556767 DAPK1P53355 1430 aa17.53■□□□□ 0.4
CCDC88C-212ENST00000556767 A2MP01023 1474 aa17.52■□□□□ 0.4
CCDC88C-212ENST00000556767 DNMT1P26358 1616 aaKnown RBP17.52■□□□□ 0.4
CCDC88C-212ENST00000556767 BCORL1Q5H9F3 1711 aa17.52■□□□□ 0.39
CCDC88C-212ENST00000556767 ADGBQ8N7X0 1667 aa17.52■□□□□ 0.39
CCDC88C-212ENST00000556767 REREQ9P2R6 1566 aa17.51■□□□□ 0.39
CCDC88C-212ENST00000556767 CHIC2Q9UKJ5 165 aa17.51■□□□□ 0.39
CCDC88C-212ENST00000556767 MAST1Q9Y2H9 1570 aa17.5■□□□□ 0.39
CCDC88C-212ENST00000556767 ITGAEP38570 1179 aa17.5■□□□□ 0.39
CCDC88C-212ENST00000556767 CROCC2H7BZ55 1655 aa17.49■□□□□ 0.39
CCDC88C-212ENST00000556767 SHANK2Q9UPX8 1470 aa17.48■□□□□ 0.39
CCDC88C-212ENST00000556767 AGLP35573 1532 aa17.47■□□□□ 0.39
CCDC88C-212ENST00000556767 ADAMTSL3P82987 1691 aa17.47■□□□□ 0.39
CCDC88C-212ENST00000556767 DHX29Q7Z478 1369 aaKnown RBP17.46■□□□□ 0.39
CCDC88C-212ENST00000556767 PLPPR3Q6T4P5 718 aa17.46■□□□□ 0.39
CCDC88C-212ENST00000556767 ESF1Q9H501 851 aaKnown RBP17.46■□□□□ 0.39
CCDC88C-212ENST00000556767 RRP7BPQ9NSQ0 103 aa17.46■□□□□ 0.39
CCDC88C-212ENST00000556767 MADDQ8WXG6 1647 aa17.46■□□□□ 0.39
CCDC88C-212ENST00000556767 GGT6Q6P531 493 aa17.45■□□□□ 0.38
CCDC88C-212ENST00000556767 PLXNC1O60486 1568 aa17.45■□□□□ 0.38
CCDC88C-212ENST00000556767 ANKRD30AQ9BXX3 1397 aa17.44■□□□□ 0.38
CCDC88C-212ENST00000556767 KIF3BO15066 747 aa17.44■□□□□ 0.38
CCDC88C-212ENST00000556767 RRBP1Q9P2E9 1410 aaKnown RBP17.44■□□□□ 0.38
CCDC88C-212ENST00000556767 KIF15Q9NS87 1388 aa17.43■□□□□ 0.38
CCDC88C-212ENST00000556767 RIMS1Q86UR5 1692 aaKnown RBP17.43■□□□□ 0.38
CCDC88C-212ENST00000556767 FER1L4A9Z1Z3 1794 aa17.43■□□□□ 0.38
CCDC88C-212ENST00000556767 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.42■□□□□ 0.38
CCDC88C-212ENST00000556767 DUOX2Q9NRD8 1548 aa17.41■□□□□ 0.38
CCDC88C-212ENST00000556767 PTPRKQ15262 1439 aa17.39■□□□□ 0.38
CCDC88C-212ENST00000556767 PTPRMP28827 1452 aa17.39■□□□□ 0.37
CCDC88C-212ENST00000556767 NCOA1Q15788 1441 aa17.38■□□□□ 0.37
CCDC88C-212ENST00000556767 ADGRL2O95490 1459 aa17.37■□□□□ 0.37
CCDC88C-212ENST00000556767 CEBPAP49715 358 aaPredicted RBP17.34■□□□□ 0.37
CCDC88C-212ENST00000556767 ERBINQ96RT1 1412 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms