RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 MYOM3Q5VTT5 1437 aa21.64■■□□□ 1.05
VIPAS39-208ENST00000556412 PPRC1Q5VV67 1664 aaKnown RBP21.63■■□□□ 1.05
VIPAS39-208ENST00000556412 PREX2Q70Z35 1606 aa21.63■■□□□ 1.05
VIPAS39-208ENST00000556412 ARAP3Q8WWN8 1544 aa21.62■■□□□ 1.05
VIPAS39-208ENST00000556412 AKNAQ7Z591 1439 aa21.62■■□□□ 1.05
VIPAS39-208ENST00000556412 NEO1Q92859 1461 aa21.61■■□□□ 1.05
VIPAS39-208ENST00000556412 ZNF644Q9H582 1327 aaPredicted RBP21.61■■□□□ 1.05
VIPAS39-208ENST00000556412 CDC42BPAQ5VT25 1732 aa21.6■■□□□ 1.05
VIPAS39-208ENST00000556412 ITSN2Q9NZM3 1697 aa21.59■■□□□ 1.05
VIPAS39-208ENST00000556412 ADGRL1O94910 1474 aa21.58■■□□□ 1.05
VIPAS39-208ENST00000556412 CDC42BPBQ9Y5S2 1711 aa21.57■■□□□ 1.04
VIPAS39-208ENST00000556412 CFAP74Q9C0B2 1584 aa21.56■■□□□ 1.04
VIPAS39-208ENST00000556412 FGD6Q6ZV73 1430 aa21.56■■□□□ 1.04
VIPAS39-208ENST00000556412 MIA2Q96PC5 1412 aa21.56■■□□□ 1.04
VIPAS39-208ENST00000556412 SCAPERQ9BY12 1400 aa21.56■■□□□ 1.04
VIPAS39-208ENST00000556412 HNRNPMP52272 730 aaKnown RBP eCLIP21.55■■□□□ 1.04
VIPAS39-208ENST00000556412 RAPGEF3O95398 923 aa21.54■■□□□ 1.04
VIPAS39-208ENST00000556412 FAM50AQ14320 339 aaKnown RBP21.54■■□□□ 1.04
VIPAS39-208ENST00000556412 SAMD9LQ8IVG5 1584 aa21.53■■□□□ 1.04
VIPAS39-208ENST00000556412 CAMSAP2Q08AD1 1489 aa21.53■■□□□ 1.04
VIPAS39-208ENST00000556412 COL17A1Q9UMD9 1497 aaPredicted RBP21.52■■□□□ 1.04
VIPAS39-208ENST00000556412 DENND4BO75064 1496 aaPredicted RBP21.51■■□□□ 1.03
VIPAS39-208ENST00000556412 PLEKHH2Q8IVE3 1493 aa21.5■■□□□ 1.03
VIPAS39-208ENST00000556412 ABCC1P33527 1531 aa21.5■■□□□ 1.03
VIPAS39-208ENST00000556412 SYCP2Q9BX26 1530 aa21.5■■□□□ 1.03
VIPAS39-208ENST00000556412 KDM6BO15054 1643 aa21.5■■□□□ 1.03
VIPAS39-208ENST00000556412 AFAP1Q8N556 730 aa21.49■■□□□ 1.03
VIPAS39-208ENST00000556412 ARHGEF12Q9NZN5 1544 aa21.49■■□□□ 1.03
VIPAS39-208ENST00000556412 KIAA1107Q9UPP5 1409 aa21.48■■□□□ 1.03
VIPAS39-208ENST00000556412 TRAPPC8Q9Y2L5 1435 aa21.47■■□□□ 1.03
VIPAS39-208ENST00000556412 PTPN23Q9H3S7 1636 aa21.47■■□□□ 1.03
VIPAS39-208ENST00000556412 MYT1LQ9UL68 1186 aa21.47■■□□□ 1.03
VIPAS39-208ENST00000556412 POGZQ7Z3K3 1410 aa21.47■■□□□ 1.03
VIPAS39-208ENST00000556412 TCOF1Q13428 1488 aaKnown RBP21.44■■□□□ 1.02
VIPAS39-208ENST00000556412 ZNF518AQ6AHZ1 1483 aa21.43■■□□□ 1.02
VIPAS39-208ENST00000556412 MBD5Q9P267 1494 aa21.43■■□□□ 1.02
VIPAS39-208ENST00000556412 ITGAEP38570 1179 aa21.42■■□□□ 1.02
VIPAS39-208ENST00000556412 RRBP1Q9P2E9 1410 aaKnown RBP21.42■■□□□ 1.02
VIPAS39-208ENST00000556412 CCDC141Q6ZP82 1450 aa21.4■■□□□ 1.02
VIPAS39-208ENST00000556412 RSPH4AQ5TD94 716 aa21.4■■□□□ 1.02
VIPAS39-208ENST00000556412 TSPY4P0CV99 314 aa21.39■■□□□ 1.02
VIPAS39-208ENST00000556412 TSPY10P0CW01 314 aa21.39■■□□□ 1.02
VIPAS39-208ENST00000556412 SPAG9O60271 1321 aaKnown RBP21.39■■□□□ 1.01
VIPAS39-208ENST00000556412 FRMPD1Q5SYB0 1578 aa21.39■■□□□ 1.01
VIPAS39-208ENST00000556412 ABCC5O15440 1437 aa21.35■■□□□ 1.01
VIPAS39-208ENST00000556412 DAPK1P53355 1430 aa21.35■■□□□ 1.01
VIPAS39-208ENST00000556412 CHIC2Q9UKJ5 165 aa21.35■■□□□ 1.01
VIPAS39-208ENST00000556412 ARHGEF5Q12774 1597 aa21.34■■□□□ 1.01
VIPAS39-208ENST00000556412 RICTORQ6R327 1708 aa21.34■■□□□ 1.01
VIPAS39-208ENST00000556412 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.34■■□□□ 1.01
VIPAS39-208ENST00000556412 KDM5CP41229 1560 aa21.33■■□□□ 1.01
VIPAS39-208ENST00000556412 C9orf84Q5VXU9 1444 aa21.32■■□□□ 1
VIPAS39-208ENST00000556412 YEATS2Q9ULM3 1422 aa21.32■■□□□ 1
VIPAS39-208ENST00000556412 ZMYM4Q5VZL5 1548 aa21.31■■□□□ 1
VIPAS39-208ENST00000556412 DNMT1P26358 1616 aaKnown RBP21.3■■□□□ 1
VIPAS39-208ENST00000556412 MLH3Q9UHC1 1453 aa21.3■■□□□ 1
VIPAS39-208ENST00000556412 MAGI2Q86UL8 1455 aa21.29■■□□□ 1
VIPAS39-208ENST00000556412 HECW2Q9P2P5 1572 aa21.29■■□□□ 1
VIPAS39-208ENST00000556412 ZFYVE16Q7Z3T8 1539 aa21.29■■□□□ 1
VIPAS39-208ENST00000556412 ATP7AQ04656 1500 aa21.28■■□□□ 1
VIPAS39-208ENST00000556412 PTPRKQ15262 1439 aa21.27■□□□□ 0.99
VIPAS39-208ENST00000556412 SHANK2Q9UPX8 1470 aa21.26■□□□□ 0.99
VIPAS39-208ENST00000556412 RTEL1-TNFRSF6BF6WH68 1400 aa21.26■□□□□ 0.99
VIPAS39-208ENST00000556412 RRP7BPQ9NSQ0 103 aa21.25■□□□□ 0.99
VIPAS39-208ENST00000556412 INO80Q9ULG1 1556 aaPredicted RBP21.24■□□□□ 0.99
VIPAS39-208ENST00000556412 ARHGEF40Q8TER5 1519 aa21.23■□□□□ 0.99
VIPAS39-208ENST00000556412 ANKRD30AQ9BXX3 1397 aa21.23■□□□□ 0.99
VIPAS39-208ENST00000556412 ATP10AO60312 1499 aa21.21■□□□□ 0.99
VIPAS39-208ENST00000556412 MAST1Q9Y2H9 1570 aa21.21■□□□□ 0.99
VIPAS39-208ENST00000556412 CROCC2H7BZ55 1655 aa21.21■□□□□ 0.99
VIPAS39-208ENST00000556412 KIDINS220Q9ULH0 1771 aa21.21■□□□□ 0.99
VIPAS39-208ENST00000556412 ARID4BQ4LE39 1312 aaPredicted RBP21.2■□□□□ 0.98
VIPAS39-208ENST00000556412 KIF15Q9NS87 1388 aa21.2■□□□□ 0.98
VIPAS39-208ENST00000556412 DIP2CQ9Y2E4 1556 aa21.2■□□□□ 0.98
VIPAS39-208ENST00000556412 ABCA6Q8N139 1617 aa21.2■□□□□ 0.98
VIPAS39-208ENST00000556412 NCOA1Q15788 1441 aa21.18■□□□□ 0.98
VIPAS39-208ENST00000556412 A2MP01023 1474 aa21.17■□□□□ 0.98
VIPAS39-208ENST00000556412 TRIM26Q12899 539 aaPredicted RBP21.17■□□□□ 0.98
VIPAS39-208ENST00000556412 ADGRL2O95490 1459 aa21.16■□□□□ 0.98
VIPAS39-208ENST00000556412 ROCK1Q13464 1354 aa21.16■□□□□ 0.98
VIPAS39-208ENST00000556412 DHX29Q7Z478 1369 aaKnown RBP21.14■□□□□ 0.98
VIPAS39-208ENST00000556412 PLXNC1O60486 1568 aa21.14■□□□□ 0.97
VIPAS39-208ENST00000556412 MLECQ14165 292 aa21.13■□□□□ 0.97
VIPAS39-208ENST00000556412 KIF3BO15066 747 aa21.11■□□□□ 0.97
VIPAS39-208ENST00000556412 DUOX2Q9NRD8 1548 aa21.1■□□□□ 0.97
VIPAS39-208ENST00000556412 ADGBQ8N7X0 1667 aa21.1■□□□□ 0.97
VIPAS39-208ENST00000556412 ANKRD50Q9ULJ7 1429 aa21.08■□□□□ 0.97
VIPAS39-208ENST00000556412 REREQ9P2R6 1566 aa21.07■□□□□ 0.96
VIPAS39-208ENST00000556412 GGT6Q6P531 493 aa21.07■□□□□ 0.96
VIPAS39-208ENST00000556412 ERBINQ96RT1 1412 aa21.07■□□□□ 0.96
VIPAS39-208ENST00000556412 HFM1A2PYH4 1435 aa21.05■□□□□ 0.96
VIPAS39-208ENST00000556412 NAIPQ13075 1403 aa21.05■□□□□ 0.96
VIPAS39-208ENST00000556412 SIGLEC1Q9BZZ2 1709 aa21.04■□□□□ 0.96
VIPAS39-208ENST00000556412 AGLP35573 1532 aa21.03■□□□□ 0.96
VIPAS39-208ENST00000556412 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.03■□□□□ 0.964e-6■■■■□ 19.8
VIPAS39-208ENST00000556412 PCGF6Q9BYE7 350 aa21■□□□□ 0.95
VIPAS39-208ENST00000556412 ESF1Q9H501 851 aaKnown RBP20.99■□□□□ 0.95
VIPAS39-208ENST00000556412 SETD5Q9C0A6 1442 aa20.98■□□□□ 0.95
VIPAS39-208ENST00000556412 EIF2AK4Q9P2K8 1649 aaKnown RBP20.96■□□□□ 0.95
VIPAS39-208ENST00000556412 GCC2Q8IWJ2 1684 aa20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms