RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 NAP1L2Q9ULW6 460 aaPredicted RBP10.63□□□□□ -0.71
SYNE2-220ENST00000555612 BECN1Q14457 450 aa10.63□□□□□ -0.71
SYNE2-220ENST00000555612 ISY1Q9ULR0 285 aaKnown RBP10.63□□□□□ -0.71
SYNE2-220ENST00000555612 HNRNPMP52272 730 aaKnown RBP eCLIP10.62□□□□□ -0.71
SYNE2-220ENST00000555612 SMARCA4P51532 1647 aa10.62□□□□□ -0.71
SYNE2-220ENST00000555612 WASHC2CQ9Y4E1 1318 aa10.62□□□□□ -0.71
SYNE2-220ENST00000555612 HMGXB3Q12766 1538 aa10.62□□□□□ -0.71
SYNE2-220ENST00000555612 KCNJ4P48050 445 aa10.62□□□□□ -0.71
SYNE2-220ENST00000555612 CCDC88BA6NC98 1476 aa10.61□□□□□ -0.71
SYNE2-220ENST00000555612 ARHGAP35Q9NRY4 1499 aa10.61□□□□□ -0.71
SYNE2-220ENST00000555612 NUP155O75694 1391 aa10.6□□□□□ -0.71
SYNE2-220ENST00000555612 NUTM2FA1L443 756 aa10.6□□□□□ -0.71
SYNE2-220ENST00000555612 SPAG9O60271 1321 aaKnown RBP10.6□□□□□ -0.71
SYNE2-220ENST00000555612 RGS3P49796 1198 aa10.6□□□□□ -0.71
SYNE2-220ENST00000555612 CHMP4BQ9H444 224 aaKnown RBP10.6□□□□□ -0.71
SYNE2-220ENST00000555612 NGDNQ8NEJ9 315 aaKnown RBP10.59□□□□□ -0.71
SYNE2-220ENST00000555612 GOLGA6L22H0YM25 854 aa10.59□□□□□ -0.71
SYNE2-220ENST00000555612 TIMELESSQ9UNS1 1208 aa10.59□□□□□ -0.71
SYNE2-220ENST00000555612 JPH4Q96JJ6 628 aa10.58□□□□□ -0.72
SYNE2-220ENST00000555612 VPS8Q8N3P4 1428 aa10.58□□□□□ -0.72
SYNE2-220ENST00000555612 EIF5BO60841 1220 aaKnown RBP10.58□□□□□ -0.72
SYNE2-220ENST00000555612 ANKRD30AQ9BXX3 1397 aa10.57□□□□□ -0.72
SYNE2-220ENST00000555612 ABCC8Q09428 1581 aa10.57□□□□□ -0.72
SYNE2-220ENST00000555612 MS4A1P11836 297 aa10.57□□□□□ -0.72
SYNE2-220ENST00000555612 CADPSQ9ULU8 1353 aa10.57□□□□□ -0.72
SYNE2-220ENST00000555612 OSCARQ8IYS5 282 aa10.57□□□□□ -0.72
SYNE2-220ENST00000555612 TMX4Q9H1E5 349 aaPredicted RBP10.57□□□□□ -0.72
SYNE2-220ENST00000555612 SUPT16HQ9Y5B9 1047 aaKnown RBP10.57□□□□□ -0.72
SYNE2-220ENST00000555612 KANK4Q5T7N3 995 aaPredicted RBP10.56□□□□□ -0.72
SYNE2-220ENST00000555612 FMN1Q68DA7 1419 aa10.56□□□□□ -0.72
SYNE2-220ENST00000555612 DDRGK1Q96HY6 314 aa10.55□□□□□ -0.72
SYNE2-220ENST00000555612 ROCK2O75116 1388 aaKnown RBP10.55□□□□□ -0.72
SYNE2-220ENST00000555612 U2AF1L5P0DN76 240 aaPredicted RBP10.55□□□□□ -0.72
SYNE2-220ENST00000555612 U2AF1Q01081 240 aaKnown RBP eCLIP10.55□□□□□ -0.72
SYNE2-220ENST00000555612 LTV1Q96GA3 475 aaPredicted RBP10.55□□□□□ -0.72
SYNE2-220ENST00000555612 APBB1O00213 710 aa10.54□□□□□ -0.72
SYNE2-220ENST00000555612 HSPA5P11021 654 aaKnown RBP10.53□□□□□ -0.72
SYNE2-220ENST00000555612 SETD5Q9C0A6 1442 aa10.53□□□□□ -0.72
SYNE2-220ENST00000555612 CLSTN1O94985 981 aa10.53□□□□□ -0.72
SYNE2-220ENST00000555612 MPHOSPH9Q99550 1183 aa10.53□□□□□ -0.72
SYNE2-220ENST00000555612 FHOD3Q2V2M9 1422 aa10.52□□□□□ -0.73
SYNE2-220ENST00000555612 AMPHP49418 695 aa10.51□□□□□ -0.73
SYNE2-220ENST00000555612 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.51□□□□□ -0.73
SYNE2-220ENST00000555612 CHMP3Q9Y3E7 222 aa10.51□□□□□ -0.73
SYNE2-220ENST00000555612 TERF2IPQ9NYB0 399 aa10.51□□□□□ -0.73
SYNE2-220ENST00000555612 KTN1Q86UP2 1357 aaKnown RBP10.5□□□□□ -0.73
SYNE2-220ENST00000555612 G3V3G9 751 aa10.5□□□□□ -0.73
SYNE2-220ENST00000555612 DCAF8Q5TAQ9 597 aa10.5□□□□□ -0.73
SYNE2-220ENST00000555612 EIF3AQ14152 1382 aaKnown RBP10.5□□□□□ -0.73
SYNE2-220ENST00000555612 NCBP3Q53F19 620 aaKnown RBP10.49□□□□□ -0.73
SYNE2-220ENST00000555612 PTMAP06454 111 aaKnown RBP10.49□□□□□ -0.73
SYNE2-220ENST00000555612 TRAK1Q9UPV9 953 aa10.49□□□□□ -0.73
SYNE2-220ENST00000555612 PTPRGP23470 1445 aa10.49□□□□□ -0.73
SYNE2-220ENST00000555612 FAM69CQ0P6D2 419 aa10.48□□□□□ -0.73
SYNE2-220ENST00000555612 TAF7LQ5H9L4 462 aa10.48□□□□□ -0.73
SYNE2-220ENST00000555612 MEX3CQ5U5Q3 659 aaKnown RBP10.48□□□□□ -0.73
SYNE2-220ENST00000555612 HSP90AB1P08238 724 aaKnown RBP10.48□□□□□ -0.73
SYNE2-220ENST00000555612 GTF2E1P29083 439 aaPredicted RBP10.48□□□□□ -0.73
SYNE2-220ENST00000555612 MSH5O43196 834 aa10.47□□□□□ -0.73
SYNE2-220ENST00000555612 PLCB2Q00722 1185 aa10.47□□□□□ -0.73
SYNE2-220ENST00000555612 CALD1Q05682 793 aaKnown RBP10.47□□□□□ -0.73
SYNE2-220ENST00000555612 RSPH4AQ5TD94 716 aa10.47□□□□□ -0.73
SYNE2-220ENST00000555612 RAPGEF2Q9Y4G8 1499 aa10.47□□□□□ -0.73
SYNE2-220ENST00000555612 GORABQ5T7V8 394 aa10.47□□□□□ -0.73
SYNE2-220ENST00000555612 STK31Q9BXU1 1019 aa10.47□□□□□ -0.73
SYNE2-220ENST00000555612 EVA1CP58658 441 aa10.47□□□□□ -0.73
SYNE2-220ENST00000555612 TRIM44Q96DX7 344 aaPredicted RBP10.47□□□□□ -0.73
SYNE2-220ENST00000555612 CCDC18Q5T9S5 1454 aa10.46□□□□□ -0.73
SYNE2-220ENST00000555612 IPO8O15397 1037 aaKnown RBP10.45□□□□□ -0.74
SYNE2-220ENST00000555612 FANCD2Q9BXW9 1451 aa10.45□□□□□ -0.74
SYNE2-220ENST00000555612 MCCP23508 829 aa10.45□□□□□ -0.74
SYNE2-220ENST00000555612 ITPRIPQ8IWB1 547 aa10.44□□□□□ -0.74
SYNE2-220ENST00000555612 ANP32EQ9BTT0 268 aa10.44□□□□□ -0.74
SYNE2-220ENST00000555612 GOLGA6L4A6NEF3 574 aa10.44□□□□□ -0.74
SYNE2-220ENST00000555612 CFTRP13569 1480 aa10.44□□□□□ -0.74
SYNE2-220ENST00000555612 GNL2Q13823 731 aaKnown RBP10.44□□□□□ -0.74
SYNE2-220ENST00000555612 RAB3GAP2Q9H2M9 1393 aa10.43□□□□□ -0.74
SYNE2-220ENST00000555612 PPP4R2Q9NY27 417 aa10.42□□□□□ -0.74
SYNE2-220ENST00000555612 SLC4A10Q6U841 1118 aa10.42□□□□□ -0.74
SYNE2-220ENST00000555612 B4GALNT3Q6L9W6 998 aa10.42□□□□□ -0.74
SYNE2-220ENST00000555612 KIAA1211Q6ZU35 1233 aa10.42□□□□□ -0.74
SYNE2-220ENST00000555612 CHMP4AQ9BY43 222 aa10.42□□□□□ -0.74
SYNE2-220ENST00000555612 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.42□□□□□ -0.74
SYNE2-220ENST00000555612 FRAT2O75474 233 aaPredicted RBP10.41□□□□□ -0.74
SYNE2-220ENST00000555612 PHF23Q9BUL5 403 aaPredicted RBP10.41□□□□□ -0.74
SYNE2-220ENST00000555612 WIZO95785 1651 aa10.41□□□□□ -0.74
SYNE2-220ENST00000555612 CCER2I3L3R5 266 aa10.41□□□□□ -0.74
SYNE2-220ENST00000555612 CCDC146Q8IYE0 955 aa10.41□□□□□ -0.74
SYNE2-220ENST00000555612 MINK1Q8N4C8 1332 aaPredicted RBP10.4□□□□□ -0.74
SYNE2-220ENST00000555612 L3MBTL2Q969R5 705 aa10.4□□□□□ -0.74
SYNE2-220ENST00000555612 VGFO15240 615 aaPredicted RBP10.4□□□□□ -0.75
SYNE2-220ENST00000555612 DNTTIP2Q5QJE6 756 aaKnown RBP10.39□□□□□ -0.75
SYNE2-220ENST00000555612 HSCBQ8IWL3 235 aa10.39□□□□□ -0.75
SYNE2-220ENST00000555612 RALBP1Q15311 655 aa10.39□□□□□ -0.75
SYNE2-220ENST00000555612 SYTL4Q96C24 671 aaPredicted RBP10.39□□□□□ -0.75
SYNE2-220ENST00000555612 SPRYD3Q8NCJ5 442 aa10.39□□□□□ -0.75
SYNE2-220ENST00000555612 SMC4Q9NTJ3 1288 aa10.38□□□□□ -0.75
SYNE2-220ENST00000555612 C1orf141Q5JVX7 400 aa10.38□□□□□ -0.75
SYNE2-220ENST00000555612 KLHL34Q8N239 644 aa10.38□□□□□ -0.75
SYNE2-220ENST00000555612 COG3Q96JB2 828 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms