RNA–Protein interactions for RNA: ENST00000554659.5

VTI1B-204, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VTI1B, Length 5,351 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-204ENST00000554659 NRDCO43847 1150 aa17.8■□□□□ 0.44
VTI1B-204ENST00000554659 ARID4BQ4LE39 1312 aaPredicted RBP17.8■□□□□ 0.44
VTI1B-204ENST00000554659 CCDC88BA6NC98 1476 aa17.8■□□□□ 0.44
VTI1B-204ENST00000554659 CHAF1AQ13111 956 aaPredicted RBP17.79■□□□□ 0.44
VTI1B-204ENST00000554659 MSNP26038 577 aaKnown RBP17.79■□□□□ 0.44
VTI1B-204ENST00000554659 ABCC8Q09428 1581 aa17.79■□□□□ 0.44
VTI1B-204ENST00000554659 MORC1Q86VD1 984 aa17.78■□□□□ 0.44
VTI1B-204ENST00000554659 PKD2Q13563 968 aa17.77■□□□□ 0.44
VTI1B-204ENST00000554659 MROH2BQ7Z745 1585 aa17.75■□□□□ 0.43
VTI1B-204ENST00000554659 OS9Q13438 667 aaPredicted RBP17.75■□□□□ 0.43
VTI1B-204ENST00000554659 HAP1P54257 671 aaPredicted RBP17.75■□□□□ 0.43
VTI1B-204ENST00000554659 MCCP23508 829 aa17.75■□□□□ 0.43
VTI1B-204ENST00000554659 FGD1P98174 961 aa17.75■□□□□ 0.43
VTI1B-204ENST00000554659 MPHOSPH9Q99550 1183 aa17.74■□□□□ 0.43
VTI1B-204ENST00000554659 FMN1Q68DA7 1419 aa17.74■□□□□ 0.43
VTI1B-204ENST00000554659 PTMSP20962 102 aa17.74■□□□□ 0.43
VTI1B-204ENST00000554659 GOLGA6L4A6NEF3 574 aa17.72■□□□□ 0.43
VTI1B-204ENST00000554659 KCNJ4P48050 445 aa17.72■□□□□ 0.43
VTI1B-204ENST00000554659 IPO8O15397 1037 aaKnown RBP17.72■□□□□ 0.43
VTI1B-204ENST00000554659 ROCK2O75116 1388 aaKnown RBP17.71■□□□□ 0.43
VTI1B-204ENST00000554659 SPRYD3Q8NCJ5 442 aa17.71■□□□□ 0.42
VTI1B-204ENST00000554659 IPO9Q96P70 1041 aaKnown RBP17.7■□□□□ 0.42
VTI1B-204ENST00000554659 RWDD1Q9H446 243 aaPredicted RBP17.7■□□□□ 0.42
VTI1B-204ENST00000554659 FOXD1Q16676 465 aa17.7■□□□□ 0.42
VTI1B-204ENST00000554659 GBP4Q96PP9 640 aa17.7■□□□□ 0.42
VTI1B-204ENST00000554659 NAP1L2Q9ULW6 460 aaPredicted RBP17.69■□□□□ 0.42
VTI1B-204ENST00000554659 SRPK2P78362 688 aaKnown RBP17.68■□□□□ 0.42
VTI1B-204ENST00000554659 PDE3BQ13370 1112 aa17.67■□□□□ 0.42
VTI1B-204ENST00000554659 DRC7Q8IY82 874 aa17.66■□□□□ 0.42
VTI1B-204ENST00000554659 ANKRD30AQ9BXX3 1397 aa17.65■□□□□ 0.42
VTI1B-204ENST00000554659 PMFBP1Q8TBY8 1022 aa17.65■□□□□ 0.42
VTI1B-204ENST00000554659 ERCC6Q03468 1493 aa17.65■□□□□ 0.42
VTI1B-204ENST00000554659 CALD1Q05682 793 aaKnown RBP17.64■□□□□ 0.41
VTI1B-204ENST00000554659 ARID3AQ99856 593 aa17.64■□□□□ 0.41
VTI1B-204ENST00000554659 NUP155O75694 1391 aa17.64■□□□□ 0.41
VTI1B-204ENST00000554659 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.63■□□□□ 0.41
VTI1B-204ENST00000554659 SMARCA2P51531 1590 aa17.62■□□□□ 0.41
VTI1B-204ENST00000554659 NLRP13Q86W25 1043 aa17.62■□□□□ 0.41
VTI1B-204ENST00000554659 L3MBTL2Q969R5 705 aa17.62■□□□□ 0.41
VTI1B-204ENST00000554659 HDGFP51858 240 aaKnown RBP17.61■□□□□ 0.41
VTI1B-204ENST00000554659 HDGFL2Q7Z4V5 671 aaPredicted RBP17.61■□□□□ 0.41
VTI1B-204ENST00000554659 SLKQ9H2G2 1235 aaPredicted RBP17.61■□□□□ 0.41
VTI1B-204ENST00000554659 TOP2AP11388 1531 aaKnown RBP17.61■□□□□ 0.41
VTI1B-204ENST00000554659 EIF3AQ14152 1382 aaKnown RBP17.61■□□□□ 0.41
VTI1B-204ENST00000554659 CARMIL2Q6F5E8 1435 aa17.6■□□□□ 0.41
VTI1B-204ENST00000554659 GOLGA2Q08379 1002 aa17.6■□□□□ 0.41
VTI1B-204ENST00000554659 DHX57Q6P158 1386 aaKnown RBP17.6■□□□□ 0.41
VTI1B-204ENST00000554659 ITPRIPQ8IWB1 547 aa17.6■□□□□ 0.41
VTI1B-204ENST00000554659 U2AF1L5P0DN76 240 aaPredicted RBP17.59■□□□□ 0.41
VTI1B-204ENST00000554659 U2AF1Q01081 240 aaKnown RBP eCLIP17.59■□□□□ 0.41
VTI1B-204ENST00000554659 PHLDB1Q86UU1 1377 aa17.59■□□□□ 0.41
VTI1B-204ENST00000554659 RTF1Q92541 710 aaKnown RBP17.58■□□□□ 0.41
VTI1B-204ENST00000554659 GZF1Q9H116 711 aaPredicted RBP17.58■□□□□ 0.41
VTI1B-204ENST00000554659 LMOD2Q6P5Q4 547 aa17.57■□□□□ 0.4
VTI1B-204ENST00000554659 GOLGA6L3A6NEY3 463 aa17.56■□□□□ 0.4
VTI1B-204ENST00000554659 KIAA2012Q0VF49 1180 aa17.55■□□□□ 0.4
VTI1B-204ENST00000554659 KIAA1211Q6ZU35 1233 aa17.55■□□□□ 0.4
VTI1B-204ENST00000554659 SAFB2Q14151 953 aaKnown RBP eCLIP17.55■□□□□ 0.4
VTI1B-204ENST00000554659 KIF15Q9NS87 1388 aa17.55■□□□□ 0.4
VTI1B-204ENST00000554659 RAPGEF2Q9Y4G8 1499 aa17.55■□□□□ 0.4
VTI1B-204ENST00000554659 SYAP1Q96A49 352 aaPredicted RBP17.54■□□□□ 0.4
VTI1B-204ENST00000554659 USP35Q9P2H5 1018 aa17.54■□□□□ 0.4
VTI1B-204ENST00000554659 MFAP1P55081 439 aaKnown RBP17.52■□□□□ 0.4
VTI1B-204ENST00000554659 CENPJQ9HC77 1338 aaPredicted RBP17.52■□□□□ 0.4
VTI1B-204ENST00000554659 MYBBP1AQ9BQG0 1328 aaKnown RBP17.52■□□□□ 0.39
VTI1B-204ENST00000554659 TNNT3P45378 269 aaPredicted RBP17.52■□□□□ 0.39
VTI1B-204ENST00000554659 APBB1O00213 710 aa17.51■□□□□ 0.39
VTI1B-204ENST00000554659 SMC4Q9NTJ3 1288 aa17.51■□□□□ 0.39
VTI1B-204ENST00000554659 FHOD3Q2V2M9 1422 aa17.5■□□□□ 0.39
VTI1B-204ENST00000554659 WIZO95785 1651 aa17.49■□□□□ 0.39
VTI1B-204ENST00000554659 CCDC18Q5T9S5 1454 aa17.49■□□□□ 0.39
VTI1B-204ENST00000554659 STK26Q9P289 416 aa17.49■□□□□ 0.39
VTI1B-204ENST00000554659 SOX12O15370 315 aa17.49■□□□□ 0.39
VTI1B-204ENST00000554659 HTATSF1O43719 755 aaKnown RBP17.48■□□□□ 0.39
VTI1B-204ENST00000554659 EFCAB2Q5VUJ9 269 aa17.48■□□□□ 0.39
VTI1B-204ENST00000554659 ZBED9Q6R2W3 1325 aa17.48■□□□□ 0.39
VTI1B-204ENST00000554659 GGT6Q6P531 493 aa17.48■□□□□ 0.39
VTI1B-204ENST00000554659 CHMP4AQ9BY43 222 aa17.47■□□□□ 0.39
VTI1B-204ENST00000554659 RSPH4AQ5TD94 716 aa17.47■□□□□ 0.39
VTI1B-204ENST00000554659 CENPQQ7L2Z9 268 aaPredicted RBP17.47■□□□□ 0.39
VTI1B-204ENST00000554659 PDS5BQ9NTI5 1447 aa17.47■□□□□ 0.39
VTI1B-204ENST00000554659 NPHP1O15259 732 aa17.46■□□□□ 0.39
VTI1B-204ENST00000554659 TDRD9Q8NDG6 1382 aaKnown RBP17.46■□□□□ 0.39
VTI1B-204ENST00000554659 PRKRIP1Q9H875 184 aaPredicted RBP17.46■□□□□ 0.39
VTI1B-204ENST00000554659 HMMRO75330 724 aa17.45■□□□□ 0.38
VTI1B-204ENST00000554659 NCBP3Q53F19 620 aaKnown RBP17.45■□□□□ 0.38
VTI1B-204ENST00000554659 CLSTN1O94985 981 aa17.45■□□□□ 0.38
VTI1B-204ENST00000554659 CCDC146Q8IYE0 955 aa17.44■□□□□ 0.38
VTI1B-204ENST00000554659 FANCIQ9NVI1 1328 aa17.44■□□□□ 0.38
VTI1B-204ENST00000554659 PDE4AP27815 886 aa17.44■□□□□ 0.38
VTI1B-204ENST00000554659 TERF2IPQ9NYB0 399 aa17.44■□□□□ 0.38
VTI1B-204ENST00000554659 GNL2Q13823 731 aaKnown RBP17.43■□□□□ 0.38
VTI1B-204ENST00000554659 FAM161AQ3B820 660 aa17.43■□□□□ 0.38
VTI1B-204ENST00000554659 STK31Q9BXU1 1019 aa17.43■□□□□ 0.38
VTI1B-204ENST00000554659 CLUAP1Q96AJ1 413 aa17.42■□□□□ 0.38
VTI1B-204ENST00000554659 RRP1P56182 461 aaKnown RBP17.42■□□□□ 0.38
VTI1B-204ENST00000554659 SPAG9O60271 1321 aaKnown RBP17.42■□□□□ 0.38
VTI1B-204ENST00000554659 DDX11L8A8MPP1 907 aa17.41■□□□□ 0.38
VTI1B-204ENST00000554659 CSPP1Q1MSJ5 1256 aa17.41■□□□□ 0.38
VTI1B-204ENST00000554659 LMOD3Q0VAK6 560 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 143.6 ms