RNA–Protein interactions for RNA: ENST00000553989.1

TDP1-208, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 728 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-208ENST00000553989 RIMS1Q86UR5 1692 aaKnown RBP14.55□□□□□ -0.08
TDP1-208ENST00000553989 CDK11AQ9UQ88 783 aaPredicted RBP14.54□□□□□ -0.08
TDP1-208ENST00000553989 ZMYM4Q5VZL5 1548 aa14.54□□□□□ -0.08
TDP1-208ENST00000553989 PCF11O94913 1555 aaKnown RBP14.54□□□□□ -0.08
TDP1-208ENST00000553989 SCAPERQ9BY12 1400 aa14.53□□□□□ -0.08
TDP1-208ENST00000553989 YEATS2Q9ULM3 1422 aa14.53□□□□□ -0.08
TDP1-208ENST00000553989 MLECQ14165 292 aa14.53□□□□□ -0.08
TDP1-208ENST00000553989 PLCH2O75038 1416 aa14.52□□□□□ -0.08
TDP1-208ENST00000553989 MAGI2Q86UL8 1455 aa14.51□□□□□ -0.09
TDP1-208ENST00000553989 ARHGAP35Q9NRY4 1499 aa14.51□□□□□ -0.09
TDP1-208ENST00000553989 LMTK3Q96Q04 1460 aa14.5□□□□□ -0.09
TDP1-208ENST00000553989 MYO5CQ9NQX4 1742 aa14.49□□□□□ -0.09
TDP1-208ENST00000553989 KIF14Q15058 1648 aa14.49□□□□□ -0.09
TDP1-208ENST00000553989 EFCAB2Q5VUJ9 269 aa14.49□□□□□ -0.09
TDP1-208ENST00000553989 MYT1LQ9UL68 1186 aa14.49□□□□□ -0.09
TDP1-208ENST00000553989 CLIP1P30622 1438 aa14.49□□□□□ -0.09
TDP1-208ENST00000553989 FBXO41Q8TF61 875 aa14.48□□□□□ -0.09
TDP1-208ENST00000553989 ARHGAP5Q13017 1502 aa14.47□□□□□ -0.09
TDP1-208ENST00000553989 HSPA2P54652 639 aa14.46□□□□□ -0.09
TDP1-208ENST00000553989 FER1L4A9Z1Z3 1794 aa14.46□□□□□ -0.09
TDP1-208ENST00000553989 TROQ12816 1431 aaPredicted RBP14.46□□□□□ -0.09
TDP1-208ENST00000553989 C9orf84Q5VXU9 1444 aa14.46□□□□□ -0.09
TDP1-208ENST00000553989 SIGLEC1Q9BZZ2 1709 aa14.46□□□□□ -0.1
TDP1-208ENST00000553989 ATP10AO60312 1499 aa14.44□□□□□ -0.1
TDP1-208ENST00000553989 ZNF518AQ6AHZ1 1483 aa14.44□□□□□ -0.1
TDP1-208ENST00000553989 PIAS4Q8N2W9 510 aaPredicted RBP14.4□□□□□ -0.1
TDP1-208ENST00000553989 AFAP1Q8N556 730 aa14.4□□□□□ -0.1
TDP1-208ENST00000553989 ARHGEF12Q9NZN5 1544 aa14.4□□□□□ -0.1
TDP1-208ENST00000553989 CCDC18Q5T9S5 1454 aa14.39□□□□□ -0.11
TDP1-208ENST00000553989 LRRIQ1Q96JM4 1722 aa14.39□□□□□ -0.11
TDP1-208ENST00000553989 KDM5CP41229 1560 aa14.38□□□□□ -0.11
TDP1-208ENST00000553989 CEBPAP49715 358 aaPredicted RBP14.37□□□□□ -0.11
TDP1-208ENST00000553989 CASKIN1Q8WXD9 1431 aa14.37□□□□□ -0.11
TDP1-208ENST00000553989 ESF1Q9H501 851 aaKnown RBP14.36□□□□□ -0.11
TDP1-208ENST00000553989 DIP2CQ9Y2E4 1556 aa14.35□□□□□ -0.11
TDP1-208ENST00000553989 PREX2Q70Z35 1606 aa14.35□□□□□ -0.11
TDP1-208ENST00000553989 CDC42BPBQ9Y5S2 1711 aa14.35□□□□□ -0.11
TDP1-208ENST00000553989 PREX1Q8TCU6 1659 aa14.34□□□□□ -0.11
TDP1-208ENST00000553989 ABCC1P33527 1531 aa14.34□□□□□ -0.11
TDP1-208ENST00000553989 ZNF777Q9ULD5 760 aaPredicted RBP14.33□□□□□ -0.12
TDP1-208ENST00000553989 ABCA6Q8N139 1617 aa14.33□□□□□ -0.12
TDP1-208ENST00000553989 UHRF1BP1Q6BDS2 1440 aa14.32□□□□□ -0.12
TDP1-208ENST00000553989 TRAPPC8Q9Y2L5 1435 aa14.32□□□□□ -0.12
TDP1-208ENST00000553989 FYCO1Q9BQS8 1478 aa14.32□□□□□ -0.12
TDP1-208ENST00000553989 ITSN2Q9NZM3 1697 aa14.32□□□□□ -0.12
TDP1-208ENST00000553989 MLH3Q9UHC1 1453 aa14.31□□□□□ -0.12
TDP1-208ENST00000553989 REREQ9P2R6 1566 aa14.3□□□□□ -0.12
TDP1-208ENST00000553989 PPP4R3CPQ6ZMV5 832 aa14.3□□□□□ -0.12
TDP1-208ENST00000553989 CERKQ8TCT0 537 aa14.3□□□□□ -0.12
TDP1-208ENST00000553989 CDC42BPAQ5VT25 1732 aa14.28□□□□□ -0.12
TDP1-208ENST00000553989 AGLP35573 1532 aa14.27□□□□□ -0.12
TDP1-208ENST00000553989 DMRT2Q9Y5R5 561 aa14.27□□□□□ -0.13
TDP1-208ENST00000553989 SYCP2Q9BX26 1530 aa14.26□□□□□ -0.13
TDP1-208ENST00000553989 KIDINS220Q9ULH0 1771 aa14.25□□□□□ -0.13
TDP1-208ENST00000553989 C3P01024 1663 aa14.25□□□□□ -0.13
TDP1-208ENST00000553989 SAMD9LQ8IVG5 1584 aa14.25□□□□□ -0.13
TDP1-208ENST00000553989 SPAG9O60271 1321 aaKnown RBP14.24□□□□□ -0.13
TDP1-208ENST00000553989 CNTLNQ9NXG0 1405 aa14.24□□□□□ -0.13
TDP1-208ENST00000553989 MTUS2Q5JR59 1369 aa14.23□□□□□ -0.13
TDP1-208ENST00000553989 CCNB3Q8WWL7 1395 aa14.23□□□□□ -0.13
TDP1-208ENST00000553989 HNRNPMP52272 730 aaKnown RBP eCLIP14.23□□□□□ -0.13
TDP1-208ENST00000553989 CFDP1Q9UEE9 299 aaPredicted RBP14.23□□□□□ -0.13
TDP1-208ENST00000553989 GPATCH8Q9UKJ3 1502 aaKnown RBP14.23□□□□□ -0.13
TDP1-208ENST00000553989 SETD1BQ9UPS6 1966 aaKnown RBP14.22□□□□□ -0.13
TDP1-208ENST00000553989 PLEKHH2Q8IVE3 1493 aa14.21□□□□□ -0.13
TDP1-208ENST00000553989 STRCQ7RTU9 1775 aa14.21□□□□□ -0.13
TDP1-208ENST00000553989 SUPT6HQ7KZ85 1726 aaKnown RBP14.2□□□□□ -0.14
TDP1-208ENST00000553989 ATP7AQ04656 1500 aa14.2□□□□□ -0.14
TDP1-208ENST00000553989 KIAA1107Q9UPP5 1409 aa14.18□□□□□ -0.14
TDP1-208ENST00000553989 A2MP01023 1474 aa14.17□□□□□ -0.14
TDP1-208ENST00000553989 PTPRTO14522 1441 aa14.16□□□□□ -0.14
TDP1-208ENST00000553989 GGT6Q6P531 493 aa14.16□□□□□ -0.14
TDP1-208ENST00000553989 ZMYM3Q14202 1370 aa14.16□□□□□ -0.14
TDP1-208ENST00000553989 INO80Q9ULG1 1556 aaPredicted RBP14.16□□□□□ -0.14
TDP1-208ENST00000553989 MROH2AA6NES4 1674 aa14.16□□□□□ -0.14
TDP1-208ENST00000553989 NPATQ14207 1427 aa14.15□□□□□ -0.14
TDP1-208ENST00000553989 EHBP1L1Q8N3D4 1523 aa14.15□□□□□ -0.14
TDP1-208ENST00000553989 NCOA1Q15788 1441 aa14.15□□□□□ -0.14
TDP1-208ENST00000553989 CLTCQ00610 1675 aaKnown RBP14.14□□□□□ -0.15
TDP1-208ENST00000553989 NCBP3Q53F19 620 aaKnown RBP14.14□□□□□ -0.15
TDP1-208ENST00000553989 PLXNC1O60486 1568 aa14.13□□□□□ -0.15
TDP1-208ENST00000553989 CAMSAP1Q5T5Y3 1602 aa14.13□□□□□ -0.15
TDP1-208ENST00000553989 TIAM1Q13009 1591 aa14.13□□□□□ -0.15
TDP1-208ENST00000553989 ZNF644Q9H582 1327 aaPredicted RBP14.12□□□□□ -0.15
TDP1-208ENST00000553989 CEP162Q5TB80 1403 aa14.11□□□□□ -0.15
TDP1-208ENST00000553989 ADGBQ8N7X0 1667 aa14.1□□□□□ -0.15
TDP1-208ENST00000553989 SLC4A1APQ9BWU0 796 aaKnown RBP14.1□□□□□ -0.15
TDP1-208ENST00000553989 MYO3AQ8NEV4 1616 aa14.1□□□□□ -0.15
TDP1-208ENST00000553989 NCKAP5LQ9HCH0 1330 aa14.09□□□□□ -0.15
TDP1-208ENST00000553989 DISP3Q9P2K9 1392 aa14.09□□□□□ -0.15
TDP1-208ENST00000553989 CEP170BQ9Y4F5 1589 aaPredicted RBP14.08□□□□□ -0.16
TDP1-208ENST00000553989 PTPRKQ15262 1439 aa14.07□□□□□ -0.16
TDP1-208ENST00000553989 MBD5Q9P267 1494 aa14.07□□□□□ -0.16
TDP1-208ENST00000553989 LTBP4Q8N2S1 1624 aa14.07□□□□□ -0.16
TDP1-208ENST00000553989 ZNF142P52746 1687 aaPredicted RBP14.07□□□□□ -0.16
TDP1-208ENST00000553989 RTEL1-TNFRSF6BF6WH68 1400 aa14.06□□□□□ -0.16
TDP1-208ENST00000553989 PLA2R1Q13018 1463 aa14.06□□□□□ -0.16
TDP1-208ENST00000553989 CCDC141Q6ZP82 1450 aa14.06□□□□□ -0.16
TDP1-208ENST00000553989 KIF3BO15066 747 aa14.05□□□□□ -0.16
TDP1-208ENST00000553989 PKD2Q13563 968 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms