RNA–Protein interactions for RNA: ENST00000553686.5

ATXN3-223, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 869 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-223ENST00000553686 NACADO15069 1562 aa12.95□□□□□ -0.34
ATXN3-223ENST00000553686 PAXIP1Q6ZW49 1069 aaPredicted RBP12.94□□□□□ -0.34
ATXN3-223ENST00000553686 CFAP44Q96MT7 982 aa12.93□□□□□ -0.34
ATXN3-223ENST00000553686 TMEM92Q6UXU6 159 aa12.92□□□□□ -0.34
ATXN3-223ENST00000553686 CECR2Q9BXF3 1484 aa12.88□□□□□ -0.35
ATXN3-223ENST00000553686 TMC2Q8TDI7 906 aa12.84□□□□□ -0.35
ATXN3-223ENST00000553686 FAM163AQ96GL9 167 aaPredicted RBP12.84□□□□□ -0.35
ATXN3-223ENST00000553686 C2orf72A6NCS6 295 aa12.83□□□□□ -0.36
ATXN3-223ENST00000553686 SNPHO15079 494 aa12.83□□□□□ -0.36
ATXN3-223ENST00000553686 KIF3CO14782 793 aa12.81□□□□□ -0.36
ATXN3-223ENST00000553686 GPHNQ9NQX3 736 aaPredicted RBP12.78□□□□□ -0.36
ATXN3-223ENST00000553686 PDE4AP27815 886 aa12.76□□□□□ -0.37
ATXN3-223ENST00000553686 CADPS2Q86UW7 1296 aa12.76□□□□□ -0.37
ATXN3-223ENST00000553686 CRISPLD2Q9H0B8 497 aa12.74□□□□□ -0.37
ATXN3-223ENST00000553686 NCKAP5LQ9HCH0 1330 aa12.73□□□□□ -0.37
ATXN3-223ENST00000553686 HOXB3P14651 431 aaPredicted RBP12.73□□□□□ -0.37
ATXN3-223ENST00000553686 BICRAQ9NZM4 1560 aa12.73□□□□□ -0.37
ATXN3-223ENST00000553686 DOK7Q18PE1 504 aa12.72□□□□□ -0.37
ATXN3-223ENST00000553686 LARP6Q9BRS8 491 aaKnown RBP12.72□□□□□ -0.37
ATXN3-223ENST00000553686 ST18O60284 1047 aa12.71□□□□□ -0.37
ATXN3-223ENST00000553686 FOXK1P85037 733 aa12.71□□□□□ -0.37
ATXN3-223ENST00000553686 PLCB2Q00722 1185 aa12.71□□□□□ -0.37
ATXN3-223ENST00000553686 DSG2Q14126 1118 aa12.7□□□□□ -0.38
ATXN3-223ENST00000553686 PLPP6Q8IY26 295 aa12.69□□□□□ -0.38
ATXN3-223ENST00000553686 ZNF710Q8N1W2 664 aa12.69□□□□□ -0.38
ATXN3-223ENST00000553686 TSHZ2Q9NRE2 1034 aa12.68□□□□□ -0.38
ATXN3-223ENST00000553686 CC2D2AQ9P2K1 1620 aa12.68□□□□□ -0.38
ATXN3-223ENST00000553686 LCE2DQ5TA82 110 aaPredicted RBP12.67□□□□□ -0.38
ATXN3-223ENST00000553686 RIMBP2O15034 1052 aa12.66□□□□□ -0.38
ATXN3-223ENST00000553686 PPP1R15BQ5SWA1 713 aa12.65□□□□□ -0.38
ATXN3-223ENST00000553686 DDX27Q96GQ7 796 aaKnown RBP12.64□□□□□ -0.39
ATXN3-223ENST00000553686 SHROOM4Q9ULL8 1493 aa12.64□□□□□ -0.39
ATXN3-223ENST00000553686 SLC34A2O95436 690 aa12.61□□□□□ -0.39
ATXN3-223ENST00000553686 MFSD10Q14728 455 aa12.61□□□□□ -0.39
ATXN3-223ENST00000553686 ZSWIM6Q9HCJ5 1215 aa12.6□□□□□ -0.39
ATXN3-223ENST00000553686 MYO15BQ96JP2 1530 aa12.6□□□□□ -0.39
ATXN3-223ENST00000553686 HOXB1P14653 301 aaPredicted RBP12.59□□□□□ -0.39
ATXN3-223ENST00000553686 ARSIQ5FYB1 569 aa12.59□□□□□ -0.39
ATXN3-223ENST00000553686 GPR153Q6NV75 609 aa12.58□□□□□ -0.4
ATXN3-223ENST00000553686 MARVELD3Q96A59 401 aa12.58□□□□□ -0.4
ATXN3-223ENST00000553686 POTEGQ6S5H5 508 aa12.56□□□□□ -0.4
ATXN3-223ENST00000553686 PCDHGA4Q9Y5G9 962 aa12.56□□□□□ -0.4
ATXN3-223ENST00000553686 POTEMA6NI47 508 aa12.55□□□□□ -0.4
ATXN3-223ENST00000553686 PTCD2Q8WV60 388 aaKnown RBP12.55□□□□□ -0.4
ATXN3-223ENST00000553686 WDR70Q9NW82 654 aa12.55□□□□□ -0.4
ATXN3-223ENST00000553686 HAP1P54257 671 aaPredicted RBP12.54□□□□□ -0.4
ATXN3-223ENST00000553686 KHSRPQ92945 711 aaKnown RBP eCLIP12.54□□□□□ -0.4
ATXN3-223ENST00000553686 UNC13AQ9UPW8 1703 aa12.54□□□□□ -0.4
ATXN3-223ENST00000553686 CUX2O14529 1486 aa12.53□□□□□ -0.4
ATXN3-223ENST00000553686 EIF4G1Q04637 1599 aaKnown RBP12.52□□□□□ -0.4
ATXN3-223ENST00000553686 TBC1D12O60347 775 aa12.52□□□□□ -0.41
ATXN3-223ENST00000553686 EMP3P54852 163 aa12.52□□□□□ -0.41
ATXN3-223ENST00000553686 UPF1Q92900 1129 aaKnown RBP eCLIP12.52□□□□□ -0.41
ATXN3-223ENST00000553686 OXER1Q8TDS5 423 aa12.5□□□□□ -0.41
ATXN3-223ENST00000553686 NUDT7P0C024 238 aa12.48□□□□□ -0.41
ATXN3-223ENST00000553686 FAM205CA6NFA0 338 aa12.47□□□□□ -0.41
ATXN3-223ENST00000553686 EMILIN3Q9NT22 766 aa12.47□□□□□ -0.41
ATXN3-223ENST00000553686 ERBB3P21860 1342 aa12.46□□□□□ -0.41
ATXN3-223ENST00000553686 CAMK2BQ13554 666 aa12.46□□□□□ -0.41
ATXN3-223ENST00000553686 MAP3K9P80192 1104 aa12.45□□□□□ -0.42
ATXN3-223ENST00000553686 E2F4Q16254 413 aa12.44□□□□□ -0.42
ATXN3-223ENST00000553686 KDM4FA0A1W2PPD8 638 aa12.41□□□□□ -0.42
ATXN3-223ENST00000553686 POTEB3A0JP26 581 aa12.41□□□□□ -0.42
ATXN3-223ENST00000553686 ZNF316A6NFI3 1004 aaPredicted RBP12.41□□□□□ -0.42
ATXN3-223ENST00000553686 POTEBQ6S5H4 581 aa12.41□□□□□ -0.42
ATXN3-223ENST00000553686 HS3ST6Q96QI5 342 aa12.41□□□□□ -0.42
ATXN3-223ENST00000553686 LHX6Q9UPM6 363 aa12.41□□□□□ -0.42
ATXN3-223ENST00000553686 VARS2Q5ST30 1063 aaKnown RBP12.39□□□□□ -0.43
ATXN3-223ENST00000553686 DPYSL4O14531 572 aa12.38□□□□□ -0.43
ATXN3-223ENST00000553686 EVI5O60447 810 aa12.37□□□□□ -0.43
ATXN3-223ENST00000553686 CDAN1Q8IWY9 1227 aa12.36□□□□□ -0.43
ATXN3-223ENST00000553686 ERCC6Q03468 1493 aa12.35□□□□□ -0.43
ATXN3-223ENST00000553686 ANO8Q9HCE9 1232 aaPredicted RBP12.35□□□□□ -0.43
ATXN3-223ENST00000553686 KDM2AQ9Y2K7 1162 aa12.35□□□□□ -0.43
ATXN3-223ENST00000553686 VSIG10Q8N0Z9 540 aa12.33□□□□□ -0.44
ATXN3-223ENST00000553686 PCDH10Q9P2E7 1040 aa12.33□□□□□ -0.44
ATXN3-223ENST00000553686 PSDA5PKW4 1024 aaPredicted RBP12.3□□□□□ -0.44
ATXN3-223ENST00000553686 ZNF687Q8N1G0 1237 aa12.3□□□□□ -0.44
ATXN3-223ENST00000553686 ARIH1Q9Y4X5 557 aaPredicted RBP12.3□□□□□ -0.44
ATXN3-223ENST00000553686 SCRIBQ14160 1630 aa12.29□□□□□ -0.44
ATXN3-223ENST00000553686 KCNV2Q8TDN2 545 aa12.27□□□□□ -0.45
ATXN3-223ENST00000553686 SPDYE16A6NNV3 312 aaPredicted RBP12.26□□□□□ -0.45
ATXN3-223ENST00000553686 ZNF454Q8N9F8 522 aa12.26□□□□□ -0.45
ATXN3-223ENST00000553686 PPP4R3BQ5MIZ7 849 aa12.25□□□□□ -0.45
ATXN3-223ENST00000553686 ARHGEF1Q92888 912 aaKnown RBP12.25□□□□□ -0.45
ATXN3-223ENST00000553686 PDIA6Q15084 440 aa12.24□□□□□ -0.45
ATXN3-223ENST00000553686 FOSBP53539 338 aa12.23□□□□□ -0.45
ATXN3-223ENST00000553686 P3H3Q8IVL6 736 aa12.23□□□□□ -0.45
ATXN3-223ENST00000553686 JPH4Q96JJ6 628 aa12.21□□□□□ -0.45
ATXN3-223ENST00000553686 PTGER2P43116 358 aa12.2□□□□□ -0.46
ATXN3-223ENST00000553686 DDX12PQ92771 950 aa12.2□□□□□ -0.46
ATXN3-223ENST00000553686 KRTAP3-3Q9BYR6 98 aa12.19□□□□□ -0.46
ATXN3-223ENST00000553686 KRTAP3-2Q9BYR7 98 aa12.19□□□□□ -0.46
ATXN3-223ENST00000553686 PCDHGA10Q9Y5H3 936 aa12.19□□□□□ -0.46
ATXN3-223ENST00000553686 DCAF1Q9Y4B6 1507 aa12.18□□□□□ -0.46
ATXN3-223ENST00000553686 PHF14O94880 888 aa12.18□□□□□ -0.46
ATXN3-223ENST00000553686 ZDHHC16Q969W1 377 aa12.18□□□□□ -0.46
ATXN3-223ENST00000553686 AXIN2Q9Y2T1 843 aa12.18□□□□□ -0.46
ATXN3-223ENST00000553686 POTEEQ6S8J3 1075 aa12.17□□□□□ -0.46
ATXN3-223ENST00000553686 ARHGAP33O14559 1287 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms