RNA–Protein interactions for RNA: ENST00000553370.5

ACTN1-208, Transcript of actinin alpha 1, humanhuman

TSL 3

Gene ACTN1, Length 605 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-208ENST00000553370 DENND4BO75064 1496 aaPredicted RBP16.37■□□□□ 0.21
ACTN1-208ENST00000553370 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.37■□□□□ 0.21
ACTN1-208ENST00000553370 AKNAQ7Z591 1439 aa16.35■□□□□ 0.21
ACTN1-208ENST00000553370 FMN1Q68DA7 1419 aa16.34■□□□□ 0.21
ACTN1-208ENST00000553370 PTPRMP28827 1452 aa16.34■□□□□ 0.21
ACTN1-208ENST00000553370 ILDR1Q86SU0 546 aaPredicted RBP16.33■□□□□ 0.2
ACTN1-208ENST00000553370 ZFYVE16Q7Z3T8 1539 aa16.33■□□□□ 0.2
ACTN1-208ENST00000553370 FER1L4A9Z1Z3 1794 aa16.32■□□□□ 0.2
ACTN1-208ENST00000553370 KIF14Q15058 1648 aa16.32■□□□□ 0.2
ACTN1-208ENST00000553370 CNKSR2Q8WXI2 1034 aa16.32■□□□□ 0.2
ACTN1-208ENST00000553370 POGZQ7Z3K3 1410 aa16.3■□□□□ 0.2
ACTN1-208ENST00000553370 SCAF1Q9H7N4 1312 aaKnown RBP16.3■□□□□ 0.2
ACTN1-208ENST00000553370 ZMYM4Q5VZL5 1548 aa16.29■□□□□ 0.2
ACTN1-208ENST00000553370 CDK11AQ9UQ88 783 aaPredicted RBP16.28■□□□□ 0.2
ACTN1-208ENST00000553370 LRRIQ1Q96JM4 1722 aa16.27■□□□□ 0.19
ACTN1-208ENST00000553370 CLIP1P30622 1438 aa16.27■□□□□ 0.19
ACTN1-208ENST00000553370 ARHGAP35Q9NRY4 1499 aa16.26■□□□□ 0.19
ACTN1-208ENST00000553370 PCF11O94913 1555 aaKnown RBP16.26■□□□□ 0.19
ACTN1-208ENST00000553370 ARHGAP5Q13017 1502 aa16.24■□□□□ 0.19
ACTN1-208ENST00000553370 MAGI2Q86UL8 1455 aa16.23■□□□□ 0.19
ACTN1-208ENST00000553370 SCAPERQ9BY12 1400 aa16.23■□□□□ 0.19
ACTN1-208ENST00000553370 MYT1LQ9UL68 1186 aa16.23■□□□□ 0.19
ACTN1-208ENST00000553370 PLCH2O75038 1416 aa16.22■□□□□ 0.19
ACTN1-208ENST00000553370 SIGLEC1Q9BZZ2 1709 aa16.22■□□□□ 0.19
ACTN1-208ENST00000553370 YEATS2Q9ULM3 1422 aa16.21■□□□□ 0.19
ACTN1-208ENST00000553370 MLECQ14165 292 aa16.21■□□□□ 0.19
ACTN1-208ENST00000553370 EFCAB2Q5VUJ9 269 aa16.2■□□□□ 0.18
ACTN1-208ENST00000553370 TROQ12816 1431 aaPredicted RBP16.19■□□□□ 0.18
ACTN1-208ENST00000553370 CDC42BPBQ9Y5S2 1711 aa16.19■□□□□ 0.18
ACTN1-208ENST00000553370 CCDC18Q5T9S5 1454 aa16.18■□□□□ 0.18
ACTN1-208ENST00000553370 ZNF518AQ6AHZ1 1483 aa16.17■□□□□ 0.18
ACTN1-208ENST00000553370 LMTK3Q96Q04 1460 aa16.17■□□□□ 0.18
ACTN1-208ENST00000553370 PREX2Q70Z35 1606 aa16.17■□□□□ 0.18
ACTN1-208ENST00000553370 C9orf84Q5VXU9 1444 aa16.17■□□□□ 0.18
ACTN1-208ENST00000553370 ATP10AO60312 1499 aa16.16■□□□□ 0.18
ACTN1-208ENST00000553370 PREX1Q8TCU6 1659 aa16.15■□□□□ 0.18
ACTN1-208ENST00000553370 ITSN2Q9NZM3 1697 aa16.14■□□□□ 0.18
ACTN1-208ENST00000553370 CDC42BPAQ5VT25 1732 aa16.14■□□□□ 0.17
ACTN1-208ENST00000553370 KDM5CP41229 1560 aa16.12■□□□□ 0.17
ACTN1-208ENST00000553370 CASKIN1Q8WXD9 1431 aa16.11■□□□□ 0.17
ACTN1-208ENST00000553370 FYCO1Q9BQS8 1478 aa16.1■□□□□ 0.17
ACTN1-208ENST00000553370 ARHGEF12Q9NZN5 1544 aa16.1■□□□□ 0.17
ACTN1-208ENST00000553370 DIP2CQ9Y2E4 1556 aa16.1■□□□□ 0.17
ACTN1-208ENST00000553370 SETD1BQ9UPS6 1966 aaKnown RBP16.1■□□□□ 0.17
ACTN1-208ENST00000553370 ABCA6Q8N139 1617 aa16.1■□□□□ 0.17
ACTN1-208ENST00000553370 HSPA2P54652 639 aa16.09■□□□□ 0.17
ACTN1-208ENST00000553370 FBXO41Q8TF61 875 aa16.09■□□□□ 0.17
ACTN1-208ENST00000553370 ABCC1P33527 1531 aa16.09■□□□□ 0.17
ACTN1-208ENST00000553370 ESF1Q9H501 851 aaKnown RBP16.07■□□□□ 0.16
ACTN1-208ENST00000553370 AFAP1Q8N556 730 aa16.06■□□□□ 0.16
ACTN1-208ENST00000553370 ZBTB22O15209 634 aa16.05■□□□□ 0.16
ACTN1-208ENST00000553370 C3P01024 1663 aa16.04■□□□□ 0.16
ACTN1-208ENST00000553370 REREQ9P2R6 1566 aa16.04■□□□□ 0.16
ACTN1-208ENST00000553370 KIDINS220Q9ULH0 1771 aa16.03■□□□□ 0.16
ACTN1-208ENST00000553370 MAPK8IP2Q13387 824 aaPredicted RBP16.03■□□□□ 0.16
ACTN1-208ENST00000553370 ZNF777Q9ULD5 760 aaPredicted RBP16.03■□□□□ 0.16
ACTN1-208ENST00000553370 SUPT6HQ7KZ85 1726 aaKnown RBP16.02■□□□□ 0.16
ACTN1-208ENST00000553370 SYCP2Q9BX26 1530 aa16.01■□□□□ 0.15
ACTN1-208ENST00000553370 MLH3Q9UHC1 1453 aa16.01■□□□□ 0.15
ACTN1-208ENST00000553370 UHRF1BP1Q6BDS2 1440 aa16.01■□□□□ 0.15
ACTN1-208ENST00000553370 TRAPPC8Q9Y2L5 1435 aa16■□□□□ 0.15
ACTN1-208ENST00000553370 SAMD9LQ8IVG5 1584 aa16■□□□□ 0.15
ACTN1-208ENST00000553370 CEBPAP49715 358 aaPredicted RBP15.99■□□□□ 0.15
ACTN1-208ENST00000553370 AGLP35573 1532 aa15.97■□□□□ 0.15
ACTN1-208ENST00000553370 MTUS2Q5JR59 1369 aa15.97■□□□□ 0.15
ACTN1-208ENST00000553370 CCNB3Q8WWL7 1395 aa15.96■□□□□ 0.15
ACTN1-208ENST00000553370 MROH2AA6NES4 1674 aa15.95■□□□□ 0.14
ACTN1-208ENST00000553370 STRCQ7RTU9 1775 aa15.95■□□□□ 0.14
ACTN1-208ENST00000553370 PLEKHH2Q8IVE3 1493 aa15.95■□□□□ 0.14
ACTN1-208ENST00000553370 SPAG9O60271 1321 aaKnown RBP15.94■□□□□ 0.14
ACTN1-208ENST00000553370 ATP7AQ04656 1500 aa15.94■□□□□ 0.14
ACTN1-208ENST00000553370 CNTLNQ9NXG0 1405 aa15.94■□□□□ 0.14
ACTN1-208ENST00000553370 CLTCQ00610 1675 aaKnown RBP15.93■□□□□ 0.14
ACTN1-208ENST00000553370 ADGBQ8N7X0 1667 aa15.93■□□□□ 0.14
ACTN1-208ENST00000553370 EHBP1L1Q8N3D4 1523 aa15.93■□□□□ 0.14
ACTN1-208ENST00000553370 CFDP1Q9UEE9 299 aaPredicted RBP15.92■□□□□ 0.14
ACTN1-208ENST00000553370 DMRT2Q9Y5R5 561 aa15.92■□□□□ 0.14
ACTN1-208ENST00000553370 GPATCH8Q9UKJ3 1502 aaKnown RBP15.92■□□□□ 0.14
ACTN1-208ENST00000553370 INO80Q9ULG1 1556 aaPredicted RBP15.92■□□□□ 0.14
ACTN1-208ENST00000553370 CERKQ8TCT0 537 aa15.91■□□□□ 0.14
ACTN1-208ENST00000553370 TIAM1Q13009 1591 aa15.89■□□□□ 0.13
ACTN1-208ENST00000553370 HNRNPMP52272 730 aaKnown RBP eCLIP15.89■□□□□ 0.131e-6■■■■■ 27.2
ACTN1-208ENST00000553370 A2MP01023 1474 aa15.86■□□□□ 0.13
ACTN1-208ENST00000553370 FOXD4L1Q9NU39 408 aa15.86■□□□□ 0.13
ACTN1-208ENST00000553370 CEP162Q5TB80 1403 aa15.85■□□□□ 0.13
ACTN1-208ENST00000553370 KIAA1107Q9UPP5 1409 aa15.85■□□□□ 0.13
ACTN1-208ENST00000553370 PLXNC1O60486 1568 aa15.85■□□□□ 0.13
ACTN1-208ENST00000553370 MYO3AQ8NEV4 1616 aa15.85■□□□□ 0.13
ACTN1-208ENST00000553370 ZNF142P52746 1687 aaPredicted RBP15.83■□□□□ 0.13
ACTN1-208ENST00000553370 CAMSAP1Q5T5Y3 1602 aa15.83■□□□□ 0.12
ACTN1-208ENST00000553370 NPATQ14207 1427 aa15.82■□□□□ 0.12
ACTN1-208ENST00000553370 GGT6Q6P531 493 aa15.81■□□□□ 0.12
ACTN1-208ENST00000553370 PTPRTO14522 1441 aa15.8■□□□□ 0.12
ACTN1-208ENST00000553370 NCOA1Q15788 1441 aa15.79■□□□□ 0.12
ACTN1-208ENST00000553370 ZMYM3Q14202 1370 aa15.79■□□□□ 0.12
ACTN1-208ENST00000553370 RNF216Q9NWF9 866 aaPredicted RBP15.79■□□□□ 0.12
ACTN1-208ENST00000553370 CEP170BQ9Y4F5 1589 aaPredicted RBP15.79■□□□□ 0.12
ACTN1-208ENST00000553370 CAMSAP2Q08AD1 1489 aa15.78■□□□□ 0.12
ACTN1-208ENST00000553370 NCOA2Q15596 1464 aa15.77■□□□□ 0.11
ACTN1-208ENST00000553370 CCDC141Q6ZP82 1450 aa15.77■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms