RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 ZFYVE16Q7Z3T8 1539 aa18.74■□□□□ 0.59
NEK3-204ENST00000552973 POGZQ7Z3K3 1410 aa18.73■□□□□ 0.59
NEK3-204ENST00000552973 AFAP1Q8N556 730 aa18.72■□□□□ 0.59
NEK3-204ENST00000552973 MYT1LQ9UL68 1186 aa18.72■□□□□ 0.59
NEK3-204ENST00000552973 KIF14Q15058 1648 aa18.71■□□□□ 0.59
NEK3-204ENST00000552973 ZMYM4Q5VZL5 1548 aa18.71■□□□□ 0.59
NEK3-204ENST00000552973 CLIP1P30622 1438 aa18.71■□□□□ 0.59
NEK3-204ENST00000552973 MAGI2Q86UL8 1455 aa18.71■□□□□ 0.59
NEK3-204ENST00000552973 HSPA2P54652 639 aa18.68■□□□□ 0.58
NEK3-204ENST00000552973 ARHGAP5Q13017 1502 aa18.68■□□□□ 0.58
NEK3-204ENST00000552973 CASKIN1Q8WXD9 1431 aa18.66■□□□□ 0.58
NEK3-204ENST00000552973 RIMS1Q86UR5 1692 aaKnown RBP18.66■□□□□ 0.58
NEK3-204ENST00000552973 SIGLEC1Q9BZZ2 1709 aa18.66■□□□□ 0.58
NEK3-204ENST00000552973 ATP10AO60312 1499 aa18.65■□□□□ 0.58
NEK3-204ENST00000552973 LMTK3Q96Q04 1460 aa18.64■□□□□ 0.57
NEK3-204ENST00000552973 MYO5CQ9NQX4 1742 aa18.63■□□□□ 0.57
NEK3-204ENST00000552973 C9orf84Q5VXU9 1444 aa18.63■□□□□ 0.57
NEK3-204ENST00000552973 PCF11O94913 1555 aaKnown RBP18.63■□□□□ 0.57
NEK3-204ENST00000552973 CEBPAP49715 358 aaPredicted RBP18.62■□□□□ 0.57
NEK3-204ENST00000552973 LRRIQ1Q96JM4 1722 aa18.62■□□□□ 0.57
NEK3-204ENST00000552973 CCDC18Q5T9S5 1454 aa18.61■□□□□ 0.57
NEK3-204ENST00000552973 ZNF518AQ6AHZ1 1483 aa18.61■□□□□ 0.57
NEK3-204ENST00000552973 ZNF777Q9ULD5 760 aaPredicted RBP18.61■□□□□ 0.57
NEK3-204ENST00000552973 TRAPPC8Q9Y2L5 1435 aa18.58■□□□□ 0.57
NEK3-204ENST00000552973 ARHGEF12Q9NZN5 1544 aa18.58■□□□□ 0.56
NEK3-204ENST00000552973 FBXO41Q8TF61 875 aa18.55■□□□□ 0.56
NEK3-204ENST00000552973 FYCO1Q9BQS8 1478 aa18.54■□□□□ 0.56
NEK3-204ENST00000552973 KDM5CP41229 1560 aa18.54■□□□□ 0.56
NEK3-204ENST00000552973 CDC42BPBQ9Y5S2 1711 aa18.53■□□□□ 0.56
NEK3-204ENST00000552973 HNRNPMP52272 730 aaKnown RBP eCLIP18.52■□□□□ 0.56
NEK3-204ENST00000552973 MLH3Q9UHC1 1453 aa18.52■□□□□ 0.55
NEK3-204ENST00000552973 DIP2CQ9Y2E4 1556 aa18.51■□□□□ 0.55
NEK3-204ENST00000552973 FER1L4A9Z1Z3 1794 aa18.5■□□□□ 0.55
NEK3-204ENST00000552973 ABCC1P33527 1531 aa18.5■□□□□ 0.55
NEK3-204ENST00000552973 PREX2Q70Z35 1606 aa18.5■□□□□ 0.55
NEK3-204ENST00000552973 ESF1Q9H501 851 aaKnown RBP18.49■□□□□ 0.55
NEK3-204ENST00000552973 CFDP1Q9UEE9 299 aaPredicted RBP18.49■□□□□ 0.55
NEK3-204ENST00000552973 GPATCH8Q9UKJ3 1502 aaKnown RBP18.49■□□□□ 0.55
NEK3-204ENST00000552973 MTUS2Q5JR59 1369 aa18.46■□□□□ 0.55
NEK3-204ENST00000552973 ABCA6Q8N139 1617 aa18.46■□□□□ 0.55
NEK3-204ENST00000552973 SPAG9O60271 1321 aaKnown RBP18.46■□□□□ 0.55
NEK3-204ENST00000552973 CCNB3Q8WWL7 1395 aa18.45■□□□□ 0.54
NEK3-204ENST00000552973 CDC42BPAQ5VT25 1732 aa18.43■□□□□ 0.54
NEK3-204ENST00000552973 ITSN2Q9NZM3 1697 aa18.43■□□□□ 0.54
NEK3-204ENST00000552973 SAMD9LQ8IVG5 1584 aa18.42■□□□□ 0.54
NEK3-204ENST00000552973 REREQ9P2R6 1566 aa18.42■□□□□ 0.54
NEK3-204ENST00000552973 SYCP2Q9BX26 1530 aa18.42■□□□□ 0.54
NEK3-204ENST00000552973 ZNF644Q9H582 1327 aaPredicted RBP18.42■□□□□ 0.54
NEK3-204ENST00000552973 AGLP35573 1532 aa18.41■□□□□ 0.54
NEK3-204ENST00000552973 UHRF1BP1Q6BDS2 1440 aa18.4■□□□□ 0.54
NEK3-204ENST00000552973 CERKQ8TCT0 537 aa18.4■□□□□ 0.54
NEK3-204ENST00000552973 KIDINS220Q9ULH0 1771 aa18.4■□□□□ 0.54
NEK3-204ENST00000552973 CEP162Q5TB80 1403 aa18.4■□□□□ 0.54
NEK3-204ENST00000552973 KIAA1107Q9UPP5 1409 aa18.39■□□□□ 0.53
NEK3-204ENST00000552973 LOC105371045A0A1W2PR82 267 aa18.37■□□□□ 0.53
NEK3-204ENST00000552973 GGT6Q6P531 493 aa18.36■□□□□ 0.53
NEK3-204ENST00000552973 PREX1Q8TCU6 1659 aa18.35■□□□□ 0.53
NEK3-204ENST00000552973 PLEKHH2Q8IVE3 1493 aa18.35■□□□□ 0.53
NEK3-204ENST00000552973 DMRT2Q9Y5R5 561 aa18.35■□□□□ 0.53
NEK3-204ENST00000552973 CNTLNQ9NXG0 1405 aa18.33■□□□□ 0.53
NEK3-204ENST00000552973 ZMYM3Q14202 1370 aa18.33■□□□□ 0.53
NEK3-204ENST00000552973 ATP7AQ04656 1500 aa18.32■□□□□ 0.52
NEK3-204ENST00000552973 A2MP01023 1474 aa18.32■□□□□ 0.52
NEK3-204ENST00000552973 C3P01024 1663 aa18.31■□□□□ 0.52
NEK3-204ENST00000552973 EHBP1L1Q8N3D4 1523 aa18.3■□□□□ 0.52
NEK3-204ENST00000552973 TIAM1Q13009 1591 aa18.3■□□□□ 0.52
NEK3-204ENST00000552973 MBD5Q9P267 1494 aa18.29■□□□□ 0.52
NEK3-204ENST00000552973 SUPT6HQ7KZ85 1726 aaKnown RBP18.28■□□□□ 0.52
NEK3-204ENST00000552973 INO80Q9ULG1 1556 aaPredicted RBP18.26■□□□□ 0.51
NEK3-204ENST00000552973 NCOA2Q15596 1464 aa18.26■□□□□ 0.51
NEK3-204ENST00000552973 STRCQ7RTU9 1775 aa18.25■□□□□ 0.51
NEK3-204ENST00000552973 SETD1BQ9UPS6 1966 aaKnown RBP18.24■□□□□ 0.51
NEK3-204ENST00000552973 NCKAP5LQ9HCH0 1330 aa18.23■□□□□ 0.51
NEK3-204ENST00000552973 NPATQ14207 1427 aa18.23■□□□□ 0.51
NEK3-204ENST00000552973 PLXNC1O60486 1568 aa18.23■□□□□ 0.51
NEK3-204ENST00000552973 KIF3BO15066 747 aa18.23■□□□□ 0.51
NEK3-204ENST00000552973 PTPRTO14522 1441 aa18.23■□□□□ 0.51
NEK3-204ENST00000552973 DHX29Q7Z478 1369 aaKnown RBP18.22■□□□□ 0.51
NEK3-204ENST00000552973 RTEL1-TNFRSF6BF6WH68 1400 aa18.22■□□□□ 0.51
NEK3-204ENST00000552973 PPP6R1Q9UPN7 881 aa18.21■□□□□ 0.51
NEK3-204ENST00000552973 PTPRKQ15262 1439 aa18.21■□□□□ 0.51
NEK3-204ENST00000552973 NCOA1Q15788 1441 aa18.21■□□□□ 0.51
NEK3-204ENST00000552973 KANK4Q5T7N3 995 aaPredicted RBP18.2■□□□□ 0.5
NEK3-204ENST00000552973 RSPH4AQ5TD94 716 aa18.2■□□□□ 0.5
NEK3-204ENST00000552973 CLTCQ00610 1675 aaKnown RBP18.19■□□□□ 0.5
NEK3-204ENST00000552973 TSPY4P0CV99 314 aa18.19■□□□□ 0.5
NEK3-204ENST00000552973 TSPY10P0CW01 314 aa18.19■□□□□ 0.5
NEK3-204ENST00000552973 VPS8Q8N3P4 1428 aa18.19■□□□□ 0.5
NEK3-204ENST00000552973 CAMSAP2Q08AD1 1489 aa18.19■□□□□ 0.5
NEK3-204ENST00000552973 CCDC141Q6ZP82 1450 aa18.19■□□□□ 0.5
NEK3-204ENST00000552973 CAMSAP1Q5T5Y3 1602 aa18.18■□□□□ 0.5
NEK3-204ENST00000552973 FBXO31Q5XUX0 539 aaPredicted RBP18.17■□□□□ 0.5
NEK3-204ENST00000552973 MROH2AA6NES4 1674 aa18.17■□□□□ 0.5
NEK3-204ENST00000552973 LRRC9Q6ZRR7 1453 aa18.15■□□□□ 0.5
NEK3-204ENST00000552973 WASHC2CQ9Y4E1 1318 aa18.15■□□□□ 0.5
NEK3-204ENST00000552973 ADGBQ8N7X0 1667 aa18.14■□□□□ 0.49
NEK3-204ENST00000552973 PKD2Q13563 968 aa18.13■□□□□ 0.49
NEK3-204ENST00000552973 ZNF335Q9H4Z2 1342 aaPredicted RBP18.13■□□□□ 0.49
NEK3-204ENST00000552973 LTBP4Q8N2S1 1624 aa18.1■□□□□ 0.49
NEK3-204ENST00000552973 MYO3AQ8NEV4 1616 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms