RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 EFCAB2Q5VUJ9 269 aa19.58■□□□□ 0.72
CKAP4-202ENST00000552828 FBXO41Q8TF61 875 aa19.56■□□□□ 0.72
CKAP4-202ENST00000552828 EHMT2Q96KQ7 1210 aa19.56■□□□□ 0.72
CKAP4-202ENST00000552828 ATP1B4Q9UN42 357 aaPredicted RBP19.56■□□□□ 0.72
CKAP4-202ENST00000552828 RIMS1Q86UR5 1692 aaKnown RBP19.55■□□□□ 0.72
CKAP4-202ENST00000552828 SIGLEC1Q9BZZ2 1709 aa19.54■□□□□ 0.72
CKAP4-202ENST00000552828 TROQ12816 1431 aaPredicted RBP19.54■□□□□ 0.72
CKAP4-202ENST00000552828 ATP10AO60312 1499 aa19.53■□□□□ 0.72
CKAP4-202ENST00000552828 KIF14Q15058 1648 aa19.5■□□□□ 0.71
CKAP4-202ENST00000552828 C9orf84Q5VXU9 1444 aa19.5■□□□□ 0.71
CKAP4-202ENST00000552828 MYO5CQ9NQX4 1742 aa19.49■□□□□ 0.71
CKAP4-202ENST00000552828 MLECQ14165 292 aa19.49■□□□□ 0.71
CKAP4-202ENST00000552828 CLIP1P30622 1438 aa19.49■□□□□ 0.71
CKAP4-202ENST00000552828 ZNF518AQ6AHZ1 1483 aa19.48■□□□□ 0.71
CKAP4-202ENST00000552828 ARHGEF12Q9NZN5 1544 aa19.48■□□□□ 0.71
CKAP4-202ENST00000552828 HSPA2P54652 639 aa19.47■□□□□ 0.71
CKAP4-202ENST00000552828 AFAP1Q8N556 730 aa19.46■□□□□ 0.71
CKAP4-202ENST00000552828 KDM5CP41229 1560 aa19.45■□□□□ 0.7
CKAP4-202ENST00000552828 ARHGAP5Q13017 1502 aa19.45■□□□□ 0.7
CKAP4-202ENST00000552828 CASKIN1Q8WXD9 1431 aa19.44■□□□□ 0.7
CKAP4-202ENST00000552828 PLPPR3Q6T4P5 718 aa19.44■□□□□ 0.7
CKAP4-202ENST00000552828 FER1L4A9Z1Z3 1794 aa19.42■□□□□ 0.7
CKAP4-202ENST00000552828 LRRIQ1Q96JM4 1722 aa19.41■□□□□ 0.7
CKAP4-202ENST00000552828 CCDC18Q5T9S5 1454 aa19.41■□□□□ 0.7
CKAP4-202ENST00000552828 MLH3Q9UHC1 1453 aa19.41■□□□□ 0.7
CKAP4-202ENST00000552828 REREQ9P2R6 1566 aa19.39■□□□□ 0.69
CKAP4-202ENST00000552828 CEBPAP49715 358 aaPredicted RBP19.37■□□□□ 0.69
CKAP4-202ENST00000552828 CDC42BPBQ9Y5S2 1711 aa19.37■□□□□ 0.69
CKAP4-202ENST00000552828 DIP2CQ9Y2E4 1556 aa19.36■□□□□ 0.69
CKAP4-202ENST00000552828 TRAPPC8Q9Y2L5 1435 aa19.35■□□□□ 0.69
CKAP4-202ENST00000552828 ABCC1P33527 1531 aa19.35■□□□□ 0.69
CKAP4-202ENST00000552828 PREX2Q70Z35 1606 aa19.34■□□□□ 0.69
CKAP4-202ENST00000552828 MYT1LQ9UL68 1186 aa19.33■□□□□ 0.68
CKAP4-202ENST00000552828 AGLP35573 1532 aa19.33■□□□□ 0.68
CKAP4-202ENST00000552828 FYCO1Q9BQS8 1478 aa19.33■□□□□ 0.68
CKAP4-202ENST00000552828 PREX1Q8TCU6 1659 aa19.31■□□□□ 0.68
CKAP4-202ENST00000552828 CERKQ8TCT0 537 aa19.31■□□□□ 0.68
CKAP4-202ENST00000552828 ABCA6Q8N139 1617 aa19.31■□□□□ 0.68
CKAP4-202ENST00000552828 DMRT2Q9Y5R5 561 aa19.28■□□□□ 0.68
CKAP4-202ENST00000552828 ITSN2Q9NZM3 1697 aa19.27■□□□□ 0.68
CKAP4-202ENST00000552828 UHRF1BP1Q6BDS2 1440 aa19.27■□□□□ 0.68
CKAP4-202ENST00000552828 GPATCH8Q9UKJ3 1502 aaKnown RBP19.26■□□□□ 0.67
CKAP4-202ENST00000552828 CDC42BPAQ5VT25 1732 aa19.25■□□□□ 0.67
CKAP4-202ENST00000552828 KIDINS220Q9ULH0 1771 aa19.24■□□□□ 0.67
CKAP4-202ENST00000552828 ESF1Q9H501 851 aaKnown RBP19.24■□□□□ 0.67
CKAP4-202ENST00000552828 SETD1BQ9UPS6 1966 aaKnown RBP19.24■□□□□ 0.67
CKAP4-202ENST00000552828 CNTLNQ9NXG0 1405 aa19.24■□□□□ 0.67
CKAP4-202ENST00000552828 SAMD9LQ8IVG5 1584 aa19.23■□□□□ 0.67
CKAP4-202ENST00000552828 KIAA1107Q9UPP5 1409 aa19.23■□□□□ 0.67
CKAP4-202ENST00000552828 ZNF777Q9ULD5 760 aaPredicted RBP19.22■□□□□ 0.67
CKAP4-202ENST00000552828 STRCQ7RTU9 1775 aa19.21■□□□□ 0.67
CKAP4-202ENST00000552828 SPAG9O60271 1321 aaKnown RBP19.21■□□□□ 0.67
CKAP4-202ENST00000552828 C3P01024 1663 aa19.2■□□□□ 0.66
CKAP4-202ENST00000552828 HNRNPMP52272 730 aaKnown RBP eCLIP19.2■□□□□ 0.66
CKAP4-202ENST00000552828 CFDP1Q9UEE9 299 aaPredicted RBP19.19■□□□□ 0.66
CKAP4-202ENST00000552828 SYCP2Q9BX26 1530 aa19.19■□□□□ 0.66
CKAP4-202ENST00000552828 PTPRTO14522 1441 aa19.18■□□□□ 0.66
CKAP4-202ENST00000552828 PLEKHH2Q8IVE3 1493 aa19.18■□□□□ 0.66
CKAP4-202ENST00000552828 CCNB3Q8WWL7 1395 aa19.17■□□□□ 0.66
CKAP4-202ENST00000552828 NPATQ14207 1427 aa19.17■□□□□ 0.66
CKAP4-202ENST00000552828 ZMYM3Q14202 1370 aa19.15■□□□□ 0.66
CKAP4-202ENST00000552828 MTUS2Q5JR59 1369 aa19.14■□□□□ 0.65
CKAP4-202ENST00000552828 ATP7AQ04656 1500 aa19.14■□□□□ 0.65
CKAP4-202ENST00000552828 PLXNC1O60486 1568 aa19.12■□□□□ 0.65
CKAP4-202ENST00000552828 NCOA1Q15788 1441 aa19.12■□□□□ 0.65
CKAP4-202ENST00000552828 MROH2AA6NES4 1674 aa19.11■□□□□ 0.65
CKAP4-202ENST00000552828 INO80Q9ULG1 1556 aaPredicted RBP19.11■□□□□ 0.65
CKAP4-202ENST00000552828 A2MP01023 1474 aa19.11■□□□□ 0.65
CKAP4-202ENST00000552828 PPP6R1Q9UPN7 881 aa19.1■□□□□ 0.65
CKAP4-202ENST00000552828 MBD5Q9P267 1494 aa19.09■□□□□ 0.65
CKAP4-202ENST00000552828 ZNF644Q9H582 1327 aaPredicted RBP19.08■□□□□ 0.65
CKAP4-202ENST00000552828 CEP162Q5TB80 1403 aa19.07■□□□□ 0.64
CKAP4-202ENST00000552828 LTBP4Q8N2S1 1624 aa19.06■□□□□ 0.64
CKAP4-202ENST00000552828 RTEL1-TNFRSF6BF6WH68 1400 aa19.06■□□□□ 0.64
CKAP4-202ENST00000552828 TIAM1Q13009 1591 aa19.06■□□□□ 0.64
CKAP4-202ENST00000552828 SUPT6HQ7KZ85 1726 aaKnown RBP19.05■□□□□ 0.64
CKAP4-202ENST00000552828 EHBP1L1Q8N3D4 1523 aa19.05■□□□□ 0.64
CKAP4-202ENST00000552828 PTPRKQ15262 1439 aa19.05■□□□□ 0.64
CKAP4-202ENST00000552828 GGT6Q6P531 493 aa19.04■□□□□ 0.64
CKAP4-202ENST00000552828 CAMSAP1Q5T5Y3 1602 aa19.03■□□□□ 0.64
CKAP4-202ENST00000552828 IQSEC2Q5JU85 1478 aa19.03■□□□□ 0.64
CKAP4-202ENST00000552828 CLTCQ00610 1675 aaKnown RBP19.01■□□□□ 0.63
CKAP4-202ENST00000552828 DHX29Q7Z478 1369 aaKnown RBP19.01■□□□□ 0.63
CKAP4-202ENST00000552828 ADGBQ8N7X0 1667 aa19.01■□□□□ 0.63
CKAP4-202ENST00000552828 PKD2Q13563 968 aa19■□□□□ 0.63
CKAP4-202ENST00000552828 PLA2R1Q13018 1463 aa19■□□□□ 0.63
CKAP4-202ENST00000552828 NCKAP5LQ9HCH0 1330 aa19■□□□□ 0.63
CKAP4-202ENST00000552828 RSPH4AQ5TD94 716 aa18.99■□□□□ 0.63
CKAP4-202ENST00000552828 ZNF142P52746 1687 aaPredicted RBP18.98■□□□□ 0.63
CKAP4-202ENST00000552828 TCOF1Q13428 1488 aaKnown RBP18.97■□□□□ 0.63
CKAP4-202ENST00000552828 CEP170BQ9Y4F5 1589 aaPredicted RBP18.97■□□□□ 0.63
CKAP4-202ENST00000552828 MYO3AQ8NEV4 1616 aa18.96■□□□□ 0.63
CKAP4-202ENST00000552828 NCOA2Q15596 1464 aa18.96■□□□□ 0.63
CKAP4-202ENST00000552828 CCDC141Q6ZP82 1450 aa18.95■□□□□ 0.62
CKAP4-202ENST00000552828 ZNF335Q9H4Z2 1342 aaPredicted RBP18.93■□□□□ 0.62
CKAP4-202ENST00000552828 A2ML1A8K2U0 1454 aa18.92■□□□□ 0.62
CKAP4-202ENST00000552828 CAMSAP2Q08AD1 1489 aa18.92■□□□□ 0.62
CKAP4-202ENST00000552828 FAM135AQ9P2D6 1515 aa18.92■□□□□ 0.62
CKAP4-202ENST00000552828 KIF3BO15066 747 aa18.92■□□□□ 0.62
CKAP4-202ENST00000552828 DISP3Q9P2K9 1392 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms