RNA–Protein interactions for RNA: ENST00000550280.1

SMARCD1-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 2

Gene SMARCD1, Length 567 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-208ENST00000550280 KIF14Q15058 1648 aa19.3■□□□□ 0.68
SMARCD1-208ENST00000550280 UBTFP17480 764 aaKnown RBP19.3■□□□□ 0.68
SMARCD1-208ENST00000550280 FMN1Q68DA7 1419 aa19.3■□□□□ 0.68
SMARCD1-208ENST00000550280 LRRIQ1Q96JM4 1722 aa19.26■□□□□ 0.67
SMARCD1-208ENST00000550280 HSPA2P54652 639 aa19.26■□□□□ 0.67
SMARCD1-208ENST00000550280 FBXO41Q8TF61 875 aa19.26■□□□□ 0.67
SMARCD1-208ENST00000550280 ATP1B4Q9UN42 357 aaPredicted RBP19.25■□□□□ 0.67
SMARCD1-208ENST00000550280 TROQ12816 1431 aaPredicted RBP19.25■□□□□ 0.67
SMARCD1-208ENST00000550280 MLECQ14165 292 aa19.24■□□□□ 0.67
SMARCD1-208ENST00000550280 MYO5CQ9NQX4 1742 aa19.23■□□□□ 0.67
SMARCD1-208ENST00000550280 ARHGEF12Q9NZN5 1544 aa19.23■□□□□ 0.67
SMARCD1-208ENST00000550280 ATP10AO60312 1499 aa19.22■□□□□ 0.67
SMARCD1-208ENST00000550280 EFCAB2Q5VUJ9 269 aa19.22■□□□□ 0.67
SMARCD1-208ENST00000550280 PLPPR3Q6T4P5 718 aa19.22■□□□□ 0.67
SMARCD1-208ENST00000550280 C9orf84Q5VXU9 1444 aa19.21■□□□□ 0.67
SMARCD1-208ENST00000550280 KDM5CP41229 1560 aa19.2■□□□□ 0.66
SMARCD1-208ENST00000550280 FER1L4A9Z1Z3 1794 aa19.19■□□□□ 0.66
SMARCD1-208ENST00000550280 AFAP1Q8N556 730 aa19.19■□□□□ 0.66
SMARCD1-208ENST00000550280 ZNF518AQ6AHZ1 1483 aa19.17■□□□□ 0.66
SMARCD1-208ENST00000550280 ARHGAP5Q13017 1502 aa19.17■□□□□ 0.66
SMARCD1-208ENST00000550280 CDK11AQ9UQ88 783 aaPredicted RBP19.17■□□□□ 0.66
SMARCD1-208ENST00000550280 DIP2CQ9Y2E4 1556 aa19.15■□□□□ 0.66
SMARCD1-208ENST00000550280 CEBPAP49715 358 aaPredicted RBP19.15■□□□□ 0.66
SMARCD1-208ENST00000550280 CDC42BPBQ9Y5S2 1711 aa19.14■□□□□ 0.66
SMARCD1-208ENST00000550280 CLIP1P30622 1438 aa19.14■□□□□ 0.65
SMARCD1-208ENST00000550280 CASKIN1Q8WXD9 1431 aa19.13■□□□□ 0.65
SMARCD1-208ENST00000550280 TRAPPC8Q9Y2L5 1435 aa19.13■□□□□ 0.65
SMARCD1-208ENST00000550280 ABCA6Q8N139 1617 aa19.12■□□□□ 0.65
SMARCD1-208ENST00000550280 ABCC1P33527 1531 aa19.11■□□□□ 0.65
SMARCD1-208ENST00000550280 PREX2Q70Z35 1606 aa19.11■□□□□ 0.65
SMARCD1-208ENST00000550280 MLH3Q9UHC1 1453 aa19.1■□□□□ 0.65
SMARCD1-208ENST00000550280 REREQ9P2R6 1566 aa19.1■□□□□ 0.65
SMARCD1-208ENST00000550280 CCDC18Q5T9S5 1454 aa19.08■□□□□ 0.64
SMARCD1-208ENST00000550280 PREX1Q8TCU6 1659 aa19.06■□□□□ 0.64
SMARCD1-208ENST00000550280 ITSN2Q9NZM3 1697 aa19.05■□□□□ 0.64
SMARCD1-208ENST00000550280 AGLP35573 1532 aa19.04■□□□□ 0.64
SMARCD1-208ENST00000550280 CDC42BPAQ5VT25 1732 aa19.03■□□□□ 0.64
SMARCD1-208ENST00000550280 CERKQ8TCT0 537 aa19.03■□□□□ 0.64
SMARCD1-208ENST00000550280 KIDINS220Q9ULH0 1771 aa19.03■□□□□ 0.64
SMARCD1-208ENST00000550280 FYCO1Q9BQS8 1478 aa19.03■□□□□ 0.64
SMARCD1-208ENST00000550280 STRCQ7RTU9 1775 aa19.02■□□□□ 0.64
SMARCD1-208ENST00000550280 SAMD9LQ8IVG5 1584 aa19■□□□□ 0.63
SMARCD1-208ENST00000550280 C3P01024 1663 aa19■□□□□ 0.63
SMARCD1-208ENST00000550280 MYT1LQ9UL68 1186 aa18.99■□□□□ 0.63
SMARCD1-208ENST00000550280 GPATCH8Q9UKJ3 1502 aaKnown RBP18.99■□□□□ 0.63
SMARCD1-208ENST00000550280 UHRF1BP1Q6BDS2 1440 aa18.99■□□□□ 0.63
SMARCD1-208ENST00000550280 SYCP2Q9BX26 1530 aa18.97■□□□□ 0.63
SMARCD1-208ENST00000550280 HNRNPMP52272 730 aaKnown RBP eCLIP18.93■□□□□ 0.62
SMARCD1-208ENST00000550280 ZNF777Q9ULD5 760 aaPredicted RBP18.93■□□□□ 0.62
SMARCD1-208ENST00000550280 SETD1BQ9UPS6 1966 aaKnown RBP18.91■□□□□ 0.62
SMARCD1-208ENST00000550280 PTPRTO14522 1441 aa18.89■□□□□ 0.61
SMARCD1-208ENST00000550280 CNTLNQ9NXG0 1405 aa18.89■□□□□ 0.61
SMARCD1-208ENST00000550280 KIAA1107Q9UPP5 1409 aa18.89■□□□□ 0.61
SMARCD1-208ENST00000550280 PLXNC1O60486 1568 aa18.89■□□□□ 0.61
SMARCD1-208ENST00000550280 INO80Q9ULG1 1556 aaPredicted RBP18.89■□□□□ 0.61
SMARCD1-208ENST00000550280 SPAG9O60271 1321 aaKnown RBP18.88■□□□□ 0.61
SMARCD1-208ENST00000550280 ATP7AQ04656 1500 aa18.88■□□□□ 0.61
SMARCD1-208ENST00000550280 NCOA1Q15788 1441 aa18.87■□□□□ 0.61
SMARCD1-208ENST00000550280 DMRT2Q9Y5R5 561 aa18.86■□□□□ 0.61
SMARCD1-208ENST00000550280 LTBP4Q8N2S1 1624 aa18.85■□□□□ 0.61
SMARCD1-208ENST00000550280 ZMYM3Q14202 1370 aa18.85■□□□□ 0.61
SMARCD1-208ENST00000550280 ZNF644Q9H582 1327 aaPredicted RBP18.85■□□□□ 0.61
SMARCD1-208ENST00000550280 CFDP1Q9UEE9 299 aaPredicted RBP18.85■□□□□ 0.61
SMARCD1-208ENST00000550280 MROH2AA6NES4 1674 aa18.85■□□□□ 0.61
SMARCD1-208ENST00000550280 NPATQ14207 1427 aa18.84■□□□□ 0.61
SMARCD1-208ENST00000550280 CCNB3Q8WWL7 1395 aa18.84■□□□□ 0.61
SMARCD1-208ENST00000550280 SUPT6HQ7KZ85 1726 aaKnown RBP18.84■□□□□ 0.61
SMARCD1-208ENST00000550280 ESF1Q9H501 851 aaKnown RBP18.84■□□□□ 0.61
SMARCD1-208ENST00000550280 TIAM1Q13009 1591 aa18.84■□□□□ 0.61
SMARCD1-208ENST00000550280 A2MP01023 1474 aa18.84■□□□□ 0.61
SMARCD1-208ENST00000550280 PLEKHH2Q8IVE3 1493 aa18.83■□□□□ 0.6
SMARCD1-208ENST00000550280 MBD5Q9P267 1494 aa18.83■□□□□ 0.6
SMARCD1-208ENST00000550280 MTUS2Q5JR59 1369 aa18.81■□□□□ 0.6
SMARCD1-208ENST00000550280 CAMSAP1Q5T5Y3 1602 aa18.8■□□□□ 0.6
SMARCD1-208ENST00000550280 PTPRKQ15262 1439 aa18.8■□□□□ 0.6
SMARCD1-208ENST00000550280 CLTCQ00610 1675 aaKnown RBP18.79■□□□□ 0.6
SMARCD1-208ENST00000550280 EHBP1L1Q8N3D4 1523 aa18.77■□□□□ 0.6
SMARCD1-208ENST00000550280 CEP162Q5TB80 1403 aa18.76■□□□□ 0.59
SMARCD1-208ENST00000550280 MYO3AQ8NEV4 1616 aa18.76■□□□□ 0.59
SMARCD1-208ENST00000550280 NCKAP5LQ9HCH0 1330 aa18.75■□□□□ 0.59
SMARCD1-208ENST00000550280 GGT6Q6P531 493 aa18.75■□□□□ 0.59
SMARCD1-208ENST00000550280 ZNF142P52746 1687 aaPredicted RBP18.75■□□□□ 0.59
SMARCD1-208ENST00000550280 ADGBQ8N7X0 1667 aa18.73■□□□□ 0.59
SMARCD1-208ENST00000550280 CEP170BQ9Y4F5 1589 aaPredicted RBP18.72■□□□□ 0.59
SMARCD1-208ENST00000550280 TCOF1Q13428 1488 aaKnown RBP18.72■□□□□ 0.59
SMARCD1-208ENST00000550280 RTEL1-TNFRSF6BF6WH68 1400 aa18.72■□□□□ 0.59
SMARCD1-208ENST00000550280 PLA2R1Q13018 1463 aa18.71■□□□□ 0.59
SMARCD1-208ENST00000550280 ILDR2Q71H61 639 aa18.71■□□□□ 0.59
SMARCD1-208ENST00000550280 ZNF335Q9H4Z2 1342 aaPredicted RBP18.71■□□□□ 0.59
SMARCD1-208ENST00000550280 IQSEC2Q5JU85 1478 aa18.71■□□□□ 0.59
SMARCD1-208ENST00000550280 DHX29Q7Z478 1369 aaKnown RBP18.7■□□□□ 0.58
SMARCD1-208ENST00000550280 NCOA2Q15596 1464 aa18.69■□□□□ 0.58
SMARCD1-208ENST00000550280 CAMSAP2Q08AD1 1489 aa18.67■□□□□ 0.58
SMARCD1-208ENST00000550280 PPP6R1Q9UPN7 881 aa18.67■□□□□ 0.58
SMARCD1-208ENST00000550280 CCDC141Q6ZP82 1450 aa18.66■□□□□ 0.58
SMARCD1-208ENST00000550280 DISP3Q9P2K9 1392 aa18.66■□□□□ 0.58
SMARCD1-208ENST00000550280 A2ML1A8K2U0 1454 aa18.65■□□□□ 0.58
SMARCD1-208ENST00000550280 DNMT1P26358 1616 aaKnown RBP18.64■□□□□ 0.57
SMARCD1-208ENST00000550280 PKD2Q13563 968 aa18.64■□□□□ 0.57
SMARCD1-208ENST00000550280 FBXO31Q5XUX0 539 aaPredicted RBP18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms