RNA–Protein interactions for RNA: ENST00000550136.1

PTCH1-220, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 2,388 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-220ENST00000550136 TOP2BQ02880 1626 aa13.11□□□□□ -0.31
PTCH1-220ENST00000550136 KCNA4P22459 653 aa13.1□□□□□ -0.31
PTCH1-220ENST00000550136 TAF7LQ5H9L4 462 aa13.09□□□□□ -0.31
PTCH1-220ENST00000550136 PLB1Q6P1J6 1458 aa13.09□□□□□ -0.31
PTCH1-220ENST00000550136 RSPH6AQ9H0K4 717 aa13.08□□□□□ -0.32
PTCH1-220ENST00000550136 COL17A1Q9UMD9 1497 aaPredicted RBP13.08□□□□□ -0.32
PTCH1-220ENST00000550136 KIAA0586Q9BVV6 1533 aa13.07□□□□□ -0.32
PTCH1-220ENST00000550136 ABCC2Q92887 1545 aa13.07□□□□□ -0.32
PTCH1-220ENST00000550136 ASXL2Q76L83 1435 aa13.06□□□□□ -0.32
PTCH1-220ENST00000550136 BCANQ96GW7 911 aa13.05□□□□□ -0.32
PTCH1-220ENST00000550136 C11orf95C9JLR9 678 aaPredicted RBP13.04□□□□□ -0.32
PTCH1-220ENST00000550136 TEX14Q8IWB6 1497 aa13.04□□□□□ -0.32
PTCH1-220ENST00000550136 PTPRGP23470 1445 aa13.04□□□□□ -0.32
PTCH1-220ENST00000550136 MAP3K4Q9Y6R4 1608 aa13.03□□□□□ -0.32
PTCH1-220ENST00000550136 UHRF1BP1LA0JNW5 1464 aa13.01□□□□□ -0.33
PTCH1-220ENST00000550136 TIMELESSQ9UNS1 1208 aa13□□□□□ -0.33
PTCH1-220ENST00000550136 LMTK3Q96Q04 1460 aa13□□□□□ -0.33
PTCH1-220ENST00000550136 EPRSP07814 1512 aaKnown RBP12.99□□□□□ -0.33
PTCH1-220ENST00000550136 CUL7Q14999 1698 aa12.99□□□□□ -0.33
PTCH1-220ENST00000550136 FKBP8Q14318 412 aa12.99□□□□□ -0.33
PTCH1-220ENST00000550136 NBR1Q14596 966 aa12.98□□□□□ -0.33
PTCH1-220ENST00000550136 TNIKQ9UKE5 1360 aa12.98□□□□□ -0.33
PTCH1-220ENST00000550136 RTL5Q5HYW3 569 aaPredicted RBP12.97□□□□□ -0.33
PTCH1-220ENST00000550136 U3KPZ7 1027 aaPredicted RBP12.96□□□□□ -0.33
PTCH1-220ENST00000550136 CARMIL2Q6F5E8 1435 aa12.95□□□□□ -0.34
PTCH1-220ENST00000550136 NOP58Q9Y2X3 529 aaKnown RBP12.94□□□□□ -0.34
PTCH1-220ENST00000550136 KDM5BQ9UGL1 1544 aa12.93□□□□□ -0.34
PTCH1-220ENST00000550136 UACAQ9BZF9 1416 aa12.93□□□□□ -0.34
PTCH1-220ENST00000550136 SOCS7O14512 581 aa12.89□□□□□ -0.35
PTCH1-220ENST00000550136 IGF1RP08069 1367 aa12.89□□□□□ -0.35
PTCH1-220ENST00000550136 WASHC2CQ9Y4E1 1318 aa12.88□□□□□ -0.35
PTCH1-220ENST00000550136 ZCCHC11Q5TAX3 1644 aaKnown RBP12.88□□□□□ -0.35
PTCH1-220ENST00000550136 CDK11AQ9UQ88 783 aaPredicted RBP12.88□□□□□ -0.35
PTCH1-220ENST00000550136 MAGI3Q5TCQ9 1506 aa12.88□□□□□ -0.35
PTCH1-220ENST00000550136 KIF21BO75037 1637 aa12.88□□□□□ -0.35
PTCH1-220ENST00000550136 WASHC2AQ641Q2 1341 aa12.87□□□□□ -0.35
PTCH1-220ENST00000550136 PTPRMP28827 1452 aa12.86□□□□□ -0.35
PTCH1-220ENST00000550136 ITGAEP38570 1179 aa12.85□□□□□ -0.35
PTCH1-220ENST00000550136 ADAMTSL3P82987 1691 aa12.85□□□□□ -0.35
PTCH1-220ENST00000550136 IQGAP2Q13576 1575 aa12.85□□□□□ -0.35
PTCH1-220ENST00000550136 WDR7Q9Y4E6 1490 aa12.84□□□□□ -0.35
PTCH1-220ENST00000550136 CFAP43Q8NDM7 1665 aa12.84□□□□□ -0.35
PTCH1-220ENST00000550136 PCF11O94913 1555 aaKnown RBP12.84□□□□□ -0.35
PTCH1-220ENST00000550136 KIF27Q86VH2 1401 aa12.83□□□□□ -0.35
PTCH1-220ENST00000550136 RSPH4AQ5TD94 716 aa12.83□□□□□ -0.36
PTCH1-220ENST00000550136 DISP1Q96F81 1524 aa12.83□□□□□ -0.36
PTCH1-220ENST00000550136 CD109Q6YHK3 1445 aa12.82□□□□□ -0.36
PTCH1-220ENST00000550136 ILDR2Q71H61 639 aa12.82□□□□□ -0.36
PTCH1-220ENST00000550136 RRP9O43818 475 aaKnown RBP12.81□□□□□ -0.36
PTCH1-220ENST00000550136 CAPN15O75808 1086 aa12.81□□□□□ -0.36
PTCH1-220ENST00000550136 ZNF326Q5BKZ1 582 aaKnown RBP12.8□□□□□ -0.36
PTCH1-220ENST00000550136 ARAP3Q8WWN8 1544 aa12.8□□□□□ -0.36
PTCH1-220ENST00000550136 DISP3Q9P2K9 1392 aa12.79□□□□□ -0.36
PTCH1-220ENST00000550136 PAK3O75914 559 aaPredicted RBP12.79□□□□□ -0.36
PTCH1-220ENST00000550136 SLC4A2P04920 1241 aa12.79□□□□□ -0.36
PTCH1-220ENST00000550136 CARMIL1Q5VZK9 1371 aa12.78□□□□□ -0.36
PTCH1-220ENST00000550136 CERKQ8TCT0 537 aa12.78□□□□□ -0.36
PTCH1-220ENST00000550136 FAM43AQ8N2R8 423 aa12.77□□□□□ -0.36
PTCH1-220ENST00000550136 UGGT2Q9NYU1 1516 aa12.77□□□□□ -0.37
PTCH1-220ENST00000550136 BRPF3Q9ULD4 1205 aa12.77□□□□□ -0.37
PTCH1-220ENST00000550136 BRD2P25440 801 aaKnown RBP12.76□□□□□ -0.37
PTCH1-220ENST00000550136 HSP90AA2PQ14568 343 aaPredicted RBP12.76□□□□□ -0.37
PTCH1-220ENST00000550136 PAXIP1Q6ZW49 1069 aaPredicted RBP12.76□□□□□ -0.37
PTCH1-220ENST00000550136 SPINK5Q9NQ38 1064 aaPredicted RBP12.76□□□□□ -0.37
PTCH1-220ENST00000550136 USP35Q9P2H5 1018 aa12.76□□□□□ -0.37
PTCH1-220ENST00000550136 BCORL1Q5H9F3 1711 aa12.75□□□□□ -0.37
PTCH1-220ENST00000550136 HOMEZQ8IX15 550 aa12.74□□□□□ -0.37
PTCH1-220ENST00000550136 KIAA0556O60303 1618 aa12.74□□□□□ -0.37
PTCH1-220ENST00000550136 MADDQ8WXG6 1647 aa12.73□□□□□ -0.37
PTCH1-220ENST00000550136 PHLDB1Q86UU1 1377 aa12.73□□□□□ -0.37
PTCH1-220ENST00000550136 NAP1L2Q9ULW6 460 aaPredicted RBP12.73□□□□□ -0.37
PTCH1-220ENST00000550136 HNRNPUL2Q1KMD3 747 aaKnown RBP12.71□□□□□ -0.37
PTCH1-220ENST00000550136 DSG3P32926 999 aa12.71□□□□□ -0.38
PTCH1-220ENST00000550136 NAP1L5Q96NT1 182 aaPredicted RBP12.71□□□□□ -0.38
PTCH1-220ENST00000550136 SPATA31D1Q6ZQQ2 1576 aa12.7□□□□□ -0.38
PTCH1-220ENST00000550136 KCNH8Q96L42 1107 aa12.7□□□□□ -0.38
PTCH1-220ENST00000550136 CHMP4AQ9BY43 222 aa12.69□□□□□ -0.38
PTCH1-220ENST00000550136 ABCA8O94911 1581 aa12.68□□□□□ -0.38
PTCH1-220ENST00000550136 NEFMP07197 916 aa12.67□□□□□ -0.38
PTCH1-220ENST00000550136 PRDM4Q9UKN5 801 aa12.67□□□□□ -0.38
PTCH1-220ENST00000550136 DHX37Q8IY37 1157 aaKnown RBP12.66□□□□□ -0.38
PTCH1-220ENST00000550136 RIMS1Q86UR5 1692 aaKnown RBP12.66□□□□□ -0.38
PTCH1-220ENST00000550136 HSPA2P54652 639 aa12.66□□□□□ -0.38
PTCH1-220ENST00000550136 CALD1Q05682 793 aaKnown RBP12.65□□□□□ -0.38
PTCH1-220ENST00000550136 IPO4Q8TEX9 1081 aaKnown RBP12.65□□□□□ -0.38
PTCH1-220ENST00000550136 IPO9Q96P70 1041 aaKnown RBP12.64□□□□□ -0.39
PTCH1-220ENST00000550136 NEO1Q92859 1461 aa12.64□□□□□ -0.39
PTCH1-220ENST00000550136 BBXQ8WY36 941 aaPredicted RBP12.64□□□□□ -0.39
PTCH1-220ENST00000550136 ARID4BQ4LE39 1312 aaPredicted RBP12.64□□□□□ -0.39
PTCH1-220ENST00000550136 ABCA9Q8IUA7 1624 aa12.63□□□□□ -0.39
PTCH1-220ENST00000550136 FRMPD1Q5SYB0 1578 aa12.62□□□□□ -0.39
PTCH1-220ENST00000550136 HSP90AA1P07900 732 aaKnown RBP12.62□□□□□ -0.39
PTCH1-220ENST00000550136 RAPGEF2Q9Y4G8 1499 aa12.62□□□□□ -0.39
PTCH1-220ENST00000550136 ZNF219Q9P2Y4 722 aaPredicted RBP12.62□□□□□ -0.39
PTCH1-220ENST00000550136 GOLGA3Q08378 1498 aa12.61□□□□□ -0.39
PTCH1-220ENST00000550136 TULP1O00294 542 aaPredicted RBP12.61□□□□□ -0.39
PTCH1-220ENST00000550136 RAPGEF3O95398 923 aa12.61□□□□□ -0.39
PTCH1-220ENST00000550136 ZBTB47Q9UFB7 747 aaPredicted RBP12.61□□□□□ -0.39
PTCH1-220ENST00000550136 ARHGEF40Q8TER5 1519 aa12.61□□□□□ -0.39
PTCH1-220ENST00000550136 GTF2E1P29083 439 aaPredicted RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms