RNA–Protein interactions for RNA: ENST00000549963.1

GPN3-206, Transcript of GPN-loop GTPase 3, humanhuman

TSL 3

Gene GPN3, Length 497 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPN3-206ENST00000549963 COL17A1Q9UMD9 1497 aaPredicted RBP23.36■■□□□ 1.33
GPN3-206ENST00000549963 CDC42BPBQ9Y5S2 1711 aa23.33■■□□□ 1.33
GPN3-206ENST00000549963 CFDP1Q9UEE9 299 aaPredicted RBP23.33■■□□□ 1.33
GPN3-206ENST00000549963 CDC42BPAQ5VT25 1732 aa23.33■■□□□ 1.32
GPN3-206ENST00000549963 PREX2Q70Z35 1606 aa23.33■■□□□ 1.32
GPN3-206ENST00000549963 DENND4BO75064 1496 aaPredicted RBP23.31■■□□□ 1.32
GPN3-206ENST00000549963 KANK4Q5T7N3 995 aaPredicted RBP23.31■■□□□ 1.32
GPN3-206ENST00000549963 ZNF777Q9ULD5 760 aaPredicted RBP23.31■■□□□ 1.32
GPN3-206ENST00000549963 ADGRL1O94910 1474 aa23.3■■□□□ 1.32
GPN3-206ENST00000549963 GPATCH8Q9UKJ3 1502 aaKnown RBP23.3■■□□□ 1.32
GPN3-206ENST00000549963 RAPGEF3O95398 923 aa23.3■■□□□ 1.32
GPN3-206ENST00000549963 SCAPERQ9BY12 1400 aa23.29■■□□□ 1.32
GPN3-206ENST00000549963 NCOA2Q15596 1464 aa23.28■■□□□ 1.32
GPN3-206ENST00000549963 ITSN2Q9NZM3 1697 aa23.27■■□□□ 1.32
GPN3-206ENST00000549963 PLEKHH2Q8IVE3 1493 aa23.21■■□□□ 1.31
GPN3-206ENST00000549963 RICTORQ6R327 1708 aa23.21■■□□□ 1.31
GPN3-206ENST00000549963 MYT1LQ9UL68 1186 aa23.2■■□□□ 1.3
GPN3-206ENST00000549963 ZNF518AQ6AHZ1 1483 aa23.18■■□□□ 1.3
GPN3-206ENST00000549963 POGZQ7Z3K3 1410 aa23.18■■□□□ 1.3
GPN3-206ENST00000549963 HNRNPMP52272 730 aaKnown RBP eCLIP23.16■■□□□ 1.3
GPN3-206ENST00000549963 AFAP1Q8N556 730 aa23.16■■□□□ 1.3
GPN3-206ENST00000549963 KIAA1107Q9UPP5 1409 aa23.16■■□□□ 1.3
GPN3-206ENST00000549963 FRMPD1Q5SYB0 1578 aa23.15■■□□□ 1.3
GPN3-206ENST00000549963 SAMD9LQ8IVG5 1584 aa23.15■■□□□ 1.3
GPN3-206ENST00000549963 ABCC1P33527 1531 aa23.15■■□□□ 1.3
GPN3-206ENST00000549963 MAGI2Q86UL8 1455 aa23.15■■□□□ 1.3
GPN3-206ENST00000549963 RSPH4AQ5TD94 716 aa23.13■■□□□ 1.29
GPN3-206ENST00000549963 MYOM3Q5VTT5 1437 aa23.13■■□□□ 1.29
GPN3-206ENST00000549963 ZMYM4Q5VZL5 1548 aa23.12■■□□□ 1.29
GPN3-206ENST00000549963 ZNF644Q9H582 1327 aaPredicted RBP23.11■■□□□ 1.29
GPN3-206ENST00000549963 MIA2Q96PC5 1412 aa23.11■■□□□ 1.29
GPN3-206ENST00000549963 ARHGEF12Q9NZN5 1544 aa23.1■■□□□ 1.29
GPN3-206ENST00000549963 TRAPPC8Q9Y2L5 1435 aa23.09■■□□□ 1.29
GPN3-206ENST00000549963 SYCP2Q9BX26 1530 aa23.09■■□□□ 1.29
GPN3-206ENST00000549963 ZFYVE16Q7Z3T8 1539 aa23.08■■□□□ 1.28
GPN3-206ENST00000549963 SPAG9O60271 1321 aaKnown RBP23.07■■□□□ 1.28
GPN3-206ENST00000549963 KDM5CP41229 1560 aa23.06■■□□□ 1.28
GPN3-206ENST00000549963 CAMSAP2Q08AD1 1489 aa23.06■■□□□ 1.28
GPN3-206ENST00000549963 ARID4BQ4LE39 1312 aaPredicted RBP23.06■■□□□ 1.28
GPN3-206ENST00000549963 MLH3Q9UHC1 1453 aa23.05■■□□□ 1.28
GPN3-206ENST00000549963 TSPY4P0CV99 314 aa23.04■■□□□ 1.28
GPN3-206ENST00000549963 TSPY10P0CW01 314 aa23.04■■□□□ 1.28
GPN3-206ENST00000549963 HECW2Q9P2P5 1572 aa23.04■■□□□ 1.28
GPN3-206ENST00000549963 PPARGC1BQ86YN6 1023 aaKnown RBP23.03■■□□□ 1.28
GPN3-206ENST00000549963 ARHGEF40Q8TER5 1519 aa23.03■■□□□ 1.28
GPN3-206ENST00000549963 ATP10AO60312 1499 aa23.02■■□□□ 1.28
GPN3-206ENST00000549963 YEATS2Q9ULM3 1422 aa23.01■■□□□ 1.27
GPN3-206ENST00000549963 MBD5Q9P267 1494 aa23■■□□□ 1.27
GPN3-206ENST00000549963 FGD6Q6ZV73 1430 aa22.99■■□□□ 1.27
GPN3-206ENST00000549963 PTPN23Q9H3S7 1636 aa22.98■■□□□ 1.27
GPN3-206ENST00000549963 CCDC141Q6ZP82 1450 aa22.98■■□□□ 1.27
GPN3-206ENST00000549963 ARHGEF5Q12774 1597 aa22.97■■□□□ 1.27
GPN3-206ENST00000549963 AEBP2Q6ZN18 517 aaPredicted RBP22.96■■□□□ 1.27
GPN3-206ENST00000549963 C9orf84Q5VXU9 1444 aa22.96■■□□□ 1.27
GPN3-206ENST00000549963 KIDINS220Q9ULH0 1771 aa22.96■■□□□ 1.27
GPN3-206ENST00000549963 RTEL1-TNFRSF6BF6WH68 1400 aa22.95■■□□□ 1.26
GPN3-206ENST00000549963 FAM50AQ14320 339 aaKnown RBP22.95■■□□□ 1.26
GPN3-206ENST00000549963 ATP7AQ04656 1500 aa22.94■■□□□ 1.26
GPN3-206ENST00000549963 DIP2CQ9Y2E4 1556 aa22.92■■□□□ 1.26
GPN3-206ENST00000549963 TCOF1Q13428 1488 aaKnown RBP22.92■■□□□ 1.26
GPN3-206ENST00000549963 KDM4FA0A1W2PPD8 638 aa22.91■■□□□ 1.26
GPN3-206ENST00000549963 ABCA6Q8N139 1617 aa22.9■■□□□ 1.26
GPN3-206ENST00000549963 INO80Q9ULG1 1556 aaPredicted RBP22.9■■□□□ 1.26
GPN3-206ENST00000549963 REREQ9P2R6 1566 aa22.88■■□□□ 1.25
GPN3-206ENST00000549963 MLECQ14165 292 aa22.87■■□□□ 1.25
GPN3-206ENST00000549963 ADGBQ8N7X0 1667 aa22.86■■□□□ 1.25
GPN3-206ENST00000549963 BCORL1Q5H9F3 1711 aa22.85■■□□□ 1.25
GPN3-206ENST00000549963 A2MP01023 1474 aa22.84■■□□□ 1.25
GPN3-206ENST00000549963 MAST1Q9Y2H9 1570 aa22.83■■□□□ 1.25
GPN3-206ENST00000549963 ABCC5O15440 1437 aa22.82■■□□□ 1.24
GPN3-206ENST00000549963 DAPK1P53355 1430 aa22.82■■□□□ 1.24
GPN3-206ENST00000549963 DNMT1P26358 1616 aaKnown RBP22.82■■□□□ 1.24
GPN3-206ENST00000549963 ESF1Q9H501 851 aaKnown RBP22.82■■□□□ 1.24
GPN3-206ENST00000549963 AGLP35573 1532 aa22.82■■□□□ 1.24
GPN3-206ENST00000549963 DHX29Q7Z478 1369 aaKnown RBP22.81■■□□□ 1.24
GPN3-206ENST00000549963 SHANK2Q9UPX8 1470 aa22.79■■□□□ 1.24
GPN3-206ENST00000549963 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.79■■□□□ 1.24
GPN3-206ENST00000549963 CROCC2H7BZ55 1655 aa22.79■■□□□ 1.24
GPN3-206ENST00000549963 ADAMTSL3P82987 1691 aa22.79■■□□□ 1.24
GPN3-206ENST00000549963 SIGLEC1Q9BZZ2 1709 aa22.79■■□□□ 1.24
GPN3-206ENST00000549963 CHIC2Q9UKJ5 165 aa22.78■■□□□ 1.24
GPN3-206ENST00000549963 ANKRD30AQ9BXX3 1397 aa22.76■■□□□ 1.23
GPN3-206ENST00000549963 RRP7BPQ9NSQ0 103 aa22.75■■□□□ 1.23
GPN3-206ENST00000549963 KIF3BO15066 747 aa22.74■■□□□ 1.23
GPN3-206ENST00000549963 GGT6Q6P531 493 aa22.74■■□□□ 1.23
GPN3-206ENST00000549963 PLXNC1O60486 1568 aa22.74■■□□□ 1.23
GPN3-206ENST00000549963 ITGAEP38570 1179 aa22.73■■□□□ 1.23
GPN3-206ENST00000549963 PPP6R1Q9UPN7 881 aa22.73■■□□□ 1.23
GPN3-206ENST00000549963 RRBP1Q9P2E9 1410 aaKnown RBP22.73■■□□□ 1.23
GPN3-206ENST00000549963 MADDQ8WXG6 1647 aa22.72■■□□□ 1.23
GPN3-206ENST00000549963 FER1L4A9Z1Z3 1794 aa22.72■■□□□ 1.23
GPN3-206ENST00000549963 KIF15Q9NS87 1388 aa22.71■■□□□ 1.23
GPN3-206ENST00000549963 DUOX2Q9NRD8 1548 aa22.71■■□□□ 1.23
GPN3-206ENST00000549963 RIMS1Q86UR5 1692 aaKnown RBP22.69■■□□□ 1.22
GPN3-206ENST00000549963 NCOA1Q15788 1441 aa22.68■■□□□ 1.22
GPN3-206ENST00000549963 PTPRMP28827 1452 aa22.67■■□□□ 1.22
GPN3-206ENST00000549963 CNTLNQ9NXG0 1405 aa22.66■■□□□ 1.22
GPN3-206ENST00000549963 ADGRL2O95490 1459 aa22.66■■□□□ 1.22
GPN3-206ENST00000549963 PLPPR3Q6T4P5 718 aa22.65■■□□□ 1.22
GPN3-206ENST00000549963 EIF2AK4Q9P2K8 1649 aaKnown RBP22.64■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms