RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 GPATCH8Q9UKJ3 1502 aaKnown RBP21.34■■□□□ 1.01
PTCH1-213ENST00000546820 CFAP74Q9C0B2 1584 aa21.33■■□□□ 1.01
PTCH1-213ENST00000546820 AKNAQ7Z591 1439 aa21.33■■□□□ 1.01
PTCH1-213ENST00000546820 ZNF777Q9ULD5 760 aaPredicted RBP21.32■■□□□ 1
PTCH1-213ENST00000546820 CDC42BPAQ5VT25 1732 aa21.29■■□□□ 1
PTCH1-213ENST00000546820 KDM6BO15054 1643 aa21.29■■□□□ 1
PTCH1-213ENST00000546820 PREX2Q70Z35 1606 aa21.29■■□□□ 1
PTCH1-213ENST00000546820 CDC42BPBQ9Y5S2 1711 aa21.28■■□□□ 1
PTCH1-213ENST00000546820 ITSN2Q9NZM3 1697 aa21.25■□□□□ 0.99
PTCH1-213ENST00000546820 PPARGC1BQ86YN6 1023 aaKnown RBP21.25■□□□□ 0.99
PTCH1-213ENST00000546820 SCAPERQ9BY12 1400 aa21.25■□□□□ 0.99
PTCH1-213ENST00000546820 ADGRL1O94910 1474 aa21.25■□□□□ 0.99
PTCH1-213ENST00000546820 RAPGEF3O95398 923 aa21.24■□□□□ 0.99
PTCH1-213ENST00000546820 DENND4BO75064 1496 aaPredicted RBP21.24■□□□□ 0.99
PTCH1-213ENST00000546820 COL17A1Q9UMD9 1497 aaPredicted RBP21.24■□□□□ 0.99
PTCH1-213ENST00000546820 MYOM3Q5VTT5 1437 aa21.22■□□□□ 0.99
PTCH1-213ENST00000546820 PLEKHH2Q8IVE3 1493 aa21.22■□□□□ 0.99
PTCH1-213ENST00000546820 MIA2Q96PC5 1412 aa21.21■□□□□ 0.99
PTCH1-213ENST00000546820 HNRNPMP52272 730 aaKnown RBP eCLIP21.19■□□□□ 0.98
PTCH1-213ENST00000546820 RSPH4AQ5TD94 716 aa21.19■□□□□ 0.98
PTCH1-213ENST00000546820 ZNF644Q9H582 1327 aaPredicted RBP21.18■□□□□ 0.98
PTCH1-213ENST00000546820 KIAA1107Q9UPP5 1409 aa21.18■□□□□ 0.98
PTCH1-213ENST00000546820 AFAP1Q8N556 730 aa21.16■□□□□ 0.98
PTCH1-213ENST00000546820 MYT1LQ9UL68 1186 aa21.16■□□□□ 0.98
PTCH1-213ENST00000546820 SAMD9LQ8IVG5 1584 aa21.14■□□□□ 0.98
PTCH1-213ENST00000546820 ABCC1P33527 1531 aa21.14■□□□□ 0.97
PTCH1-213ENST00000546820 ZNF518AQ6AHZ1 1483 aa21.13■□□□□ 0.97
PTCH1-213ENST00000546820 POGZQ7Z3K3 1410 aa21.13■□□□□ 0.97
PTCH1-213ENST00000546820 FGD6Q6ZV73 1430 aa21.12■□□□□ 0.97
PTCH1-213ENST00000546820 ARHGEF12Q9NZN5 1544 aa21.11■□□□□ 0.97
PTCH1-213ENST00000546820 CAMSAP2Q08AD1 1489 aa21.11■□□□□ 0.97
PTCH1-213ENST00000546820 TRAPPC8Q9Y2L5 1435 aa21.11■□□□□ 0.97
PTCH1-213ENST00000546820 TSPY4P0CV99 314 aa21.1■□□□□ 0.97
PTCH1-213ENST00000546820 TSPY10P0CW01 314 aa21.1■□□□□ 0.97
PTCH1-213ENST00000546820 RICTORQ6R327 1708 aa21.09■□□□□ 0.97
PTCH1-213ENST00000546820 SYCP2Q9BX26 1530 aa21.09■□□□□ 0.97
PTCH1-213ENST00000546820 MAGI2Q86UL8 1455 aa21.08■□□□□ 0.97
PTCH1-213ENST00000546820 FAM50AQ14320 339 aaKnown RBP21.08■□□□□ 0.97
PTCH1-213ENST00000546820 SPAG9O60271 1321 aaKnown RBP21.07■□□□□ 0.96
PTCH1-213ENST00000546820 MBD5Q9P267 1494 aa21.07■□□□□ 0.96
PTCH1-213ENST00000546820 FRMPD1Q5SYB0 1578 aa21.06■□□□□ 0.96
PTCH1-213ENST00000546820 PTPN23Q9H3S7 1636 aa21.06■□□□□ 0.96
PTCH1-213ENST00000546820 ZMYM4Q5VZL5 1548 aa21.04■□□□□ 0.96
PTCH1-213ENST00000546820 TCOF1Q13428 1488 aaKnown RBP21.03■□□□□ 0.96
PTCH1-213ENST00000546820 MLH3Q9UHC1 1453 aa21.03■□□□□ 0.96
PTCH1-213ENST00000546820 KDM5CP41229 1560 aa21.02■□□□□ 0.96
PTCH1-213ENST00000546820 CCDC141Q6ZP82 1450 aa21.02■□□□□ 0.96
PTCH1-213ENST00000546820 ARHGEF5Q12774 1597 aa21.01■□□□□ 0.95
PTCH1-213ENST00000546820 ZFYVE16Q7Z3T8 1539 aa20.99■□□□□ 0.95
PTCH1-213ENST00000546820 RTEL1-TNFRSF6BF6WH68 1400 aa20.99■□□□□ 0.95
PTCH1-213ENST00000546820 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.98■□□□□ 0.95
PTCH1-213ENST00000546820 HECW2Q9P2P5 1572 aa20.98■□□□□ 0.95
PTCH1-213ENST00000546820 ATP10AO60312 1499 aa20.97■□□□□ 0.95
PTCH1-213ENST00000546820 YEATS2Q9ULM3 1422 aa20.96■□□□□ 0.95
PTCH1-213ENST00000546820 ARID4BQ4LE39 1312 aaPredicted RBP20.95■□□□□ 0.94
PTCH1-213ENST00000546820 ABCC5O15440 1437 aa20.94■□□□□ 0.94
PTCH1-213ENST00000546820 DAPK1P53355 1430 aa20.94■□□□□ 0.94
PTCH1-213ENST00000546820 RRBP1Q9P2E9 1410 aaKnown RBP20.94■□□□□ 0.94
PTCH1-213ENST00000546820 ATP7AQ04656 1500 aa20.94■□□□□ 0.94
PTCH1-213ENST00000546820 ARHGEF40Q8TER5 1519 aa20.94■□□□□ 0.94
PTCH1-213ENST00000546820 KIDINS220Q9ULH0 1771 aa20.92■□□□□ 0.94
PTCH1-213ENST00000546820 C9orf84Q5VXU9 1444 aa20.92■□□□□ 0.94
PTCH1-213ENST00000546820 DNMT1P26358 1616 aaKnown RBP20.91■□□□□ 0.94
PTCH1-213ENST00000546820 ITGAEP38570 1179 aa20.9■□□□□ 0.94
PTCH1-213ENST00000546820 CHIC2Q9UKJ5 165 aa20.9■□□□□ 0.94
PTCH1-213ENST00000546820 INO80Q9ULG1 1556 aaPredicted RBP20.89■□□□□ 0.94
PTCH1-213ENST00000546820 SHANK2Q9UPX8 1470 aa20.88■□□□□ 0.93
PTCH1-213ENST00000546820 DIP2CQ9Y2E4 1556 aa20.88■□□□□ 0.93
PTCH1-213ENST00000546820 MAST1Q9Y2H9 1570 aa20.88■□□□□ 0.93
PTCH1-213ENST00000546820 ANKRD30AQ9BXX3 1397 aa20.87■□□□□ 0.93
PTCH1-213ENST00000546820 ABCA6Q8N139 1617 aa20.86■□□□□ 0.93
PTCH1-213ENST00000546820 RRP7BPQ9NSQ0 103 aa20.86■□□□□ 0.93
PTCH1-213ENST00000546820 A2MP01023 1474 aa20.86■□□□□ 0.93
PTCH1-213ENST00000546820 DHX29Q7Z478 1369 aaKnown RBP20.85■□□□□ 0.93
PTCH1-213ENST00000546820 REREQ9P2R6 1566 aa20.84■□□□□ 0.93
PTCH1-213ENST00000546820 ADGBQ8N7X0 1667 aa20.83■□□□□ 0.93
PTCH1-213ENST00000546820 CROCC2H7BZ55 1655 aa20.83■□□□□ 0.92
PTCH1-213ENST00000546820 MLECQ14165 292 aa20.81■□□□□ 0.92
PTCH1-213ENST00000546820 KIF15Q9NS87 1388 aa20.81■□□□□ 0.92
PTCH1-213ENST00000546820 NCOA1Q15788 1441 aa20.8■□□□□ 0.92
PTCH1-213ENST00000546820 AGLP35573 1532 aa20.79■□□□□ 0.92
PTCH1-213ENST00000546820 AEBP2Q6ZN18 517 aaPredicted RBP20.79■□□□□ 0.92
PTCH1-213ENST00000546820 PLXNC1O60486 1568 aa20.79■□□□□ 0.92
PTCH1-213ENST00000546820 PTPRKQ15262 1439 aa20.78■□□□□ 0.92
PTCH1-213ENST00000546820 ADGRL2O95490 1459 aa20.78■□□□□ 0.92
PTCH1-213ENST00000546820 ROCK1Q13464 1354 aa20.78■□□□□ 0.92
PTCH1-213ENST00000546820 KIF3BO15066 747 aa20.78■□□□□ 0.92
PTCH1-213ENST00000546820 DUOX2Q9NRD8 1548 aa20.78■□□□□ 0.92
PTCH1-213ENST00000546820 ESF1Q9H501 851 aaKnown RBP20.77■□□□□ 0.92
PTCH1-213ENST00000546820 GGT6Q6P531 493 aa20.76■□□□□ 0.91
PTCH1-213ENST00000546820 PPP6R1Q9UPN7 881 aa20.75■□□□□ 0.91
PTCH1-213ENST00000546820 KDM4FA0A1W2PPD8 638 aa20.74■□□□□ 0.91
PTCH1-213ENST00000546820 BCORL1Q5H9F3 1711 aa20.72■□□□□ 0.91
PTCH1-213ENST00000546820 ERBINQ96RT1 1412 aa20.71■□□□□ 0.91
PTCH1-213ENST00000546820 SIGLEC1Q9BZZ2 1709 aa20.71■□□□□ 0.91
PTCH1-213ENST00000546820 ANKRD50Q9ULJ7 1429 aa20.7■□□□□ 0.9
PTCH1-213ENST00000546820 ADAMTSL3P82987 1691 aa20.67■□□□□ 0.9
PTCH1-213ENST00000546820 EIF2AK4Q9P2K8 1649 aaKnown RBP20.66■□□□□ 0.9
PTCH1-213ENST00000546820 WASHC2CQ9Y4E1 1318 aa20.65■□□□□ 0.9
PTCH1-213ENST00000546820 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms