RNA–Protein interactions for RNA: ENST00000546088.5

TAF1D-222, Transcript of TATA-box binding protein associated factor, RNA polymerase I subunit D, human

TSL 3

Gene TAF1D, Length 1,728 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TAF1D-222	ENST00000546088	ZNF710	Q8N1W2	664 aa		11.81	□□□□□ -0.52
TAF1D-222	ENST00000546088	DOK7	Q18PE1	504 aa		11.8	□□□□□ -0.52
TAF1D-222	ENST00000546088	WIZ	O95785	1651 aa		11.8	□□□□□ -0.52
TAF1D-222	ENST00000546088	SMARCA2	P51531	1590 aa		11.78	□□□□□ -0.52
TAF1D-222	ENST00000546088	SPOCK2	Q92563	424 aa		11.77	□□□□□ -0.52
TAF1D-222	ENST00000546088	ERBB3	P21860	1342 aa		11.77	□□□□□ -0.53
TAF1D-222	ENST00000546088	NCAPD3	P42695	1498 aa		11.77	□□□□□ -0.53
TAF1D-222	ENST00000546088	CIZ1	Q9ULV3	898 aa	Predicted RBP	11.76	□□□□□ -0.53
TAF1D-222	ENST00000546088	RSF1	Q96T23	1441 aa	Predicted RBP	11.76	□□□□□ -0.53
TAF1D-222	ENST00000546088	BAZ1B	Q9UIG0	1483 aa	Known RBP	11.76	□□□□□ -0.53
TAF1D-222	ENST00000546088	RIMBP2	O15034	1052 aa		11.72	□□□□□ -0.53
TAF1D-222	ENST00000546088	PEG3	Q9GZU2	1588 aa		11.72	□□□□□ -0.53
TAF1D-222	ENST00000546088	IFNLR1	Q8IU57	520 aa	Predicted RBP	11.71	□□□□□ -0.54
TAF1D-222	ENST00000546088	RNF166	Q96A37	237 aa	Predicted RBP	11.71	□□□□□ -0.54
TAF1D-222	ENST00000546088	HMGXB3	Q12766	1538 aa		11.7	□□□□□ -0.54
TAF1D-222	ENST00000546088	VARS2	Q5ST30	1063 aa	Known RBP	11.68	□□□□□ -0.54
TAF1D-222	ENST00000546088	ZSWIM6	Q9HCJ5	1215 aa		11.68	□□□□□ -0.54
TAF1D-222	ENST00000546088	EFCAB3	Q8N7B9	438 aa		11.67	□□□□□ -0.54
TAF1D-222	ENST00000546088	SUPT5H	O00267	1087 aa	Known RBP	11.66	□□□□□ -0.54
TAF1D-222	ENST00000546088	ZNF687	Q8N1G0	1237 aa		11.64	□□□□□ -0.55
TAF1D-222	ENST00000546088	MYT1L	Q9UL68	1186 aa		11.64	□□□□□ -0.55
TAF1D-222	ENST00000546088	MICALL2	Q8IY33	904 aa		11.63	□□□□□ -0.55
TAF1D-222	ENST00000546088	TRIM41	Q8WV44	630 aa		11.63	□□□□□ -0.55
TAF1D-222	ENST00000546088	TMEM92	Q6UXU6	159 aa		11.63	□□□□□ -0.55
TAF1D-222	ENST00000546088	GPR153	Q6NV75	609 aa		11.6	□□□□□ -0.55
TAF1D-222	ENST00000546088	NES	P48681	1621 aa		11.6	□□□□□ -0.55
TAF1D-222	ENST00000546088	TOP2A	P11388	1531 aa	Known RBP	11.59	□□□□□ -0.55
TAF1D-222	ENST00000546088	PTGER2	P43116	358 aa		11.58	□□□□□ -0.56
TAF1D-222	ENST00000546088	SOX12	O15370	315 aa		11.57	□□□□□ -0.56
TAF1D-222	ENST00000546088	MS4A4A	Q96JQ5	239 aa		11.52	□□□□□ -0.56
TAF1D-222	ENST00000546088	CCDC88B	A6NC98	1476 aa		11.51	□□□□□ -0.57
TAF1D-222	ENST00000546088	ERCC6	Q03468	1493 aa		11.49	□□□□□ -0.57
TAF1D-222	ENST00000546088	ARSI	Q5FYB1	569 aa		11.49	□□□□□ -0.57
TAF1D-222	ENST00000546088	RIOK3	O14730	519 aa	Known RBP	11.47	□□□□□ -0.57
TAF1D-222	ENST00000546088	PHF8	Q9UPP1	1060 aa		11.47	□□□□□ -0.57
TAF1D-222	ENST00000546088	CADPS	Q9ULU8	1353 aa		11.47	□□□□□ -0.57
TAF1D-222	ENST00000546088	LAMC3	Q9Y6N6	1575 aa		11.46	□□□□□ -0.58
TAF1D-222	ENST00000546088	ZNF316	A6NFI3	1004 aa	Predicted RBP	11.46	□□□□□ -0.58
TAF1D-222	ENST00000546088	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	11.45	□□□□□ -0.58
TAF1D-222	ENST00000546088	ANKRD13D	Q6ZTN6	518 aa		11.45	□□□□□ -0.58
TAF1D-222	ENST00000546088	ZFP91	Q96JP5	570 aa	Predicted RBP	11.45	□□□□□ -0.58
TAF1D-222	ENST00000546088	VGF	O15240	615 aa	Predicted RBP	11.43	□□□□□ -0.58
TAF1D-222	ENST00000546088	RNF25	Q96BH1	459 aa	Predicted RBP	11.43	□□□□□ -0.58
TAF1D-222	ENST00000546088	KIF21A	Q7Z4S6	1674 aa		11.43	□□□□□ -0.58
TAF1D-222	ENST00000546088	LSM11	P83369	360 aa	Known RBP eCLIP	11.41	□□□□□ -0.58	4e-6	■□□□□ 10.5
TAF1D-222	ENST00000546088	KHSRP	Q92945	711 aa	Known RBP eCLIP	11.4	□□□□□ -0.58	8e-10	■■□□□ 12.9
TAF1D-222	ENST00000546088	CFTR	P13569	1480 aa		11.4	□□□□□ -0.58
TAF1D-222	ENST00000546088	PDS5B	Q9NTI5	1447 aa		11.39	□□□□□ -0.59
TAF1D-222	ENST00000546088	NLRP6	P59044	892 aa		11.38	□□□□□ -0.59
TAF1D-222	ENST00000546088	PBX2	P40425	430 aa		11.36	□□□□□ -0.59
TAF1D-222	ENST00000546088	FANCD2	Q9BXW9	1451 aa		11.36	□□□□□ -0.59
TAF1D-222	ENST00000546088	FBXO22	Q8NEZ5	403 aa		11.35	□□□□□ -0.59
TAF1D-222	ENST00000546088	CEP164	Q9UPV0	1460 aa		11.33	□□□□□ -0.6
TAF1D-222	ENST00000546088	THOC2	Q8NI27	1593 aa	Known RBP	11.33	□□□□□ -0.6
TAF1D-222	ENST00000546088	PRDM2	Q13029	1718 aa		11.32	□□□□□ -0.6
TAF1D-222	ENST00000546088	KIF3C	O14782	793 aa		11.32	□□□□□ -0.6
TAF1D-222	ENST00000546088	NUDT7	P0C024	238 aa		11.29	□□□□□ -0.6
TAF1D-222	ENST00000546088	MRC2	Q9UBG0	1479 aa		11.28	□□□□□ -0.6
TAF1D-222	ENST00000546088	C2orf72	A6NCS6	295 aa		11.28	□□□□□ -0.6
TAF1D-222	ENST00000546088	POTEE	Q6S8J3	1075 aa		11.28	□□□□□ -0.6
TAF1D-222	ENST00000546088	SLC34A2	O95436	690 aa		11.27	□□□□□ -0.61
TAF1D-222	ENST00000546088	BCL11B	Q9C0K0	894 aa	Predicted RBP	11.27	□□□□□ -0.61
TAF1D-222	ENST00000546088	TAOK2	Q9UL54	1235 aa		11.27	□□□□□ -0.61
TAF1D-222	ENST00000546088	PLA2G2E	Q9NZK7	142 aa		11.26	□□□□□ -0.61
TAF1D-222	ENST00000546088	LHX6	Q9UPM6	363 aa		11.26	□□□□□ -0.61
TAF1D-222	ENST00000546088	HCST	Q9UBK5	93 aa		11.26	□□□□□ -0.61
TAF1D-222	ENST00000546088	URB2	Q14146	1524 aa	Known RBP	11.25	□□□□□ -0.61
TAF1D-222	ENST00000546088	MFRP	Q9BY79	579 aa		11.25	□□□□□ -0.61
TAF1D-222	ENST00000546088	AXIN2	Q9Y2T1	843 aa		11.24	□□□□□ -0.61
TAF1D-222	ENST00000546088	PCDHGA4	Q9Y5G9	962 aa		11.24	□□□□□ -0.61
TAF1D-222	ENST00000546088	CUX2	O14529	1486 aa		11.23	□□□□□ -0.61
TAF1D-222	ENST00000546088	WDR62	O43379	1518 aa		11.23	□□□□□ -0.61
TAF1D-222	ENST00000546088	STK24	Q9Y6E0	443 aa		11.22	□□□□□ -0.61
TAF1D-222	ENST00000546088	TOPBP1	Q92547	1522 aa		11.19	□□□□□ -0.62
TAF1D-222	ENST00000546088	ADGRD1	Q6QNK2	874 aa		11.18	□□□□□ -0.62
TAF1D-222	ENST00000546088	DNAJC5	Q9H3Z4	198 aa		11.18	□□□□□ -0.62
TAF1D-222	ENST00000546088	ABCC8	Q09428	1581 aa		11.18	□□□□□ -0.62
TAF1D-222	ENST00000546088	ARHGAP33	O14559	1287 aa		11.18	□□□□□ -0.62
TAF1D-222	ENST00000546088	PSD	A5PKW4	1024 aa	Predicted RBP	11.17	□□□□□ -0.62
TAF1D-222	ENST00000546088	TMC2	Q8TDI7	906 aa		11.16	□□□□□ -0.62
TAF1D-222	ENST00000546088	DNMBP	Q6XZF7	1577 aa		11.15	□□□□□ -0.62
TAF1D-222	ENST00000546088	CUX1	P39880	1505 aa		11.14	□□□□□ -0.63
TAF1D-222	ENST00000546088	STK25	O00506	426 aa		11.14	□□□□□ -0.63
TAF1D-222	ENST00000546088	TK2	O00142	265 aa		11.13	□□□□□ -0.63
TAF1D-222	ENST00000546088	RAD54L2	Q9Y4B4	1467 aa		11.11	□□□□□ -0.63
TAF1D-222	ENST00000546088	KDM4F	A0A1W2PPD8	638 aa		11.11	□□□□□ -0.63
TAF1D-222	ENST00000546088	HR	O43593	1189 aa		11.1	□□□□□ -0.63
TAF1D-222	ENST00000546088	POLA1	P09884	1462 aa	Predicted RBP	11.1	□□□□□ -0.63
TAF1D-222	ENST00000546088	FGD5	Q6ZNL6	1462 aa		11.1	□□□□□ -0.63
TAF1D-222	ENST00000546088	WRN	Q14191	1432 aa	Predicted RBP eCLIP	11.09	□□□□□ -0.63
TAF1D-222	ENST00000546088	SYNJ1	O43426	1573 aa		11.09	□□□□□ -0.63
TAF1D-222	ENST00000546088	ZNF608	Q9ULD9	1512 aa	Predicted RBP	11.09	□□□□□ -0.63
TAF1D-222	ENST00000546088	PTCD2	Q8WV60	388 aa	Known RBP	11.07	□□□□□ -0.64
TAF1D-222	ENST00000546088	DMRTA1	Q5VZB9	504 aa		11.06	□□□□□ -0.64
TAF1D-222	ENST00000546088	SOGA1	O94964	1423 aa		11.06	□□□□□ -0.64
TAF1D-222	ENST00000546088	IFT140	Q96RY7	1462 aa		11.05	□□□□□ -0.64
TAF1D-222	ENST00000546088	PSEN2	P49810	448 aa		11.04	□□□□□ -0.64
TAF1D-222	ENST00000546088	TARBP1	Q13395	1621 aa	Known RBP	11.04	□□□□□ -0.64
TAF1D-222	ENST00000546088	TDRD9	Q8NDG6	1382 aa	Known RBP	11.04	□□□□□ -0.64
TAF1D-222	ENST00000546088	AQR	O60306	1485 aa	Known RBP eCLIP	11.04	□□□□□ -0.64	1e-9	■■■■■ 43

Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms