RNA–Protein interactions for RNA: ENST00000544246.5

PCDH9-204, Transcript of protocadherin 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PCDH9, Length 6,234 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-204ENST00000544246 ATAD2BQ9ULI0 1458 aa13.2□□□□□ -0.3
PCDH9-204ENST00000544246 CC2D2AQ9P2K1 1620 aa13.2□□□□□ -0.3
PCDH9-204ENST00000544246 DEKP35659 375 aaKnown RBP13.19□□□□□ -0.3
PCDH9-204ENST00000544246 RGL3Q3MIN7 710 aa13.19□□□□□ -0.3
PCDH9-204ENST00000544246 SETQ01105 290 aaPredicted RBP13.18□□□□□ -0.3
PCDH9-204ENST00000544246 RRP7BPQ9NSQ0 103 aa13.18□□□□□ -0.3
PCDH9-204ENST00000544246 GBP4Q96PP9 640 aa13.18□□□□□ -0.3
PCDH9-204ENST00000544246 PDE4CQ08493 712 aa13.17□□□□□ -0.3
PCDH9-204ENST00000544246 POGKQ9P215 609 aa13.17□□□□□ -0.3
PCDH9-204ENST00000544246 PLEKHD1A6NEE1 506 aa13.16□□□□□ -0.3
PCDH9-204ENST00000544246 SYAP1Q96A49 352 aaPredicted RBP13.16□□□□□ -0.3
PCDH9-204ENST00000544246 U2SURPO15042 1029 aaKnown RBP13.16□□□□□ -0.3
PCDH9-204ENST00000544246 CARD11Q9BXL7 1154 aa13.16□□□□□ -0.3
PCDH9-204ENST00000544246 WRNQ14191 1432 aaPredicted RBP eCLIP13.16□□□□□ -0.3
PCDH9-204ENST00000544246 KIAA1211Q6ZU35 1233 aa13.16□□□□□ -0.3
PCDH9-204ENST00000544246 MROH2BQ7Z745 1585 aa13.14□□□□□ -0.31
PCDH9-204ENST00000544246 SOGA1O94964 1423 aa13.14□□□□□ -0.31
PCDH9-204ENST00000544246 CALRP27797 417 aaKnown RBP13.14□□□□□ -0.31
PCDH9-204ENST00000544246 CCDC34Q96HJ3 373 aa13.12□□□□□ -0.31
PCDH9-204ENST00000544246 KIF27Q86VH2 1401 aa13.12□□□□□ -0.31
PCDH9-204ENST00000544246 CEP89Q96ST8 783 aa13.12□□□□□ -0.31
PCDH9-204ENST00000544246 HSP90B1P14625 803 aaKnown RBP13.11□□□□□ -0.31
PCDH9-204ENST00000544246 CC2D1BQ5T0F9 858 aaKnown RBP13.11□□□□□ -0.31
PCDH9-204ENST00000544246 TDRD9Q8NDG6 1382 aaKnown RBP13.1□□□□□ -0.31
PCDH9-204ENST00000544246 TPM3P06753 285 aa13.09□□□□□ -0.31
PCDH9-204ENST00000544246 B4GALNT3Q6L9W6 998 aa13.09□□□□□ -0.31
PCDH9-204ENST00000544246 FANCD2Q9BXW9 1451 aa13.08□□□□□ -0.31
PCDH9-204ENST00000544246 SMARCA4P51532 1647 aa13.08□□□□□ -0.32
PCDH9-204ENST00000544246 CSPP1Q1MSJ5 1256 aa13.08□□□□□ -0.32
PCDH9-204ENST00000544246 GZF1Q9H116 711 aaPredicted RBP13.07□□□□□ -0.32
PCDH9-204ENST00000544246 RASSF8Q8NHQ8 419 aa13.07□□□□□ -0.32
PCDH9-204ENST00000544246 RTF1Q92541 710 aaKnown RBP13.07□□□□□ -0.32
PCDH9-204ENST00000544246 TMX4Q9H1E5 349 aaPredicted RBP13.06□□□□□ -0.32
PCDH9-204ENST00000544246 CUX2O14529 1486 aa13.06□□□□□ -0.32
PCDH9-204ENST00000544246 GOLGA6L3A6NEY3 463 aa13.06□□□□□ -0.32
PCDH9-204ENST00000544246 CREBRFQ8IUR6 639 aa13.05□□□□□ -0.32
PCDH9-204ENST00000544246 APBB1O00213 710 aa13.04□□□□□ -0.32
PCDH9-204ENST00000544246 IPO8O15397 1037 aaKnown RBP13.03□□□□□ -0.32
PCDH9-204ENST00000544246 CARMIL2Q6F5E8 1435 aa13.03□□□□□ -0.32
PCDH9-204ENST00000544246 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.03□□□□□ -0.32
PCDH9-204ENST00000544246 CCDC88BA6NC98 1476 aa13.02□□□□□ -0.32
PCDH9-204ENST00000544246 NCAPD3P42695 1498 aa13.01□□□□□ -0.33
PCDH9-204ENST00000544246 PATL2C9JE40 543 aaKnown RBP13.01□□□□□ -0.33
PCDH9-204ENST00000544246 GPATCH3Q96I76 525 aa13.01□□□□□ -0.33
PCDH9-204ENST00000544246 TMF1P82094 1093 aa13.01□□□□□ -0.33
PCDH9-204ENST00000544246 ABCC8Q09428 1581 aa13□□□□□ -0.33
PCDH9-204ENST00000544246 PHF14O94880 888 aa13□□□□□ -0.33
PCDH9-204ENST00000544246 GORABQ5T7V8 394 aa13□□□□□ -0.33
PCDH9-204ENST00000544246 MLECQ14165 292 aa12.99□□□□□ -0.33
PCDH9-204ENST00000544246 SOX12O15370 315 aa12.99□□□□□ -0.33
PCDH9-204ENST00000544246 RWDD1Q9H446 243 aaPredicted RBP12.99□□□□□ -0.33
PCDH9-204ENST00000544246 MORC1Q86VD1 984 aa12.99□□□□□ -0.33
PCDH9-204ENST00000544246 SLKQ9H2G2 1235 aaPredicted RBP12.99□□□□□ -0.33
PCDH9-204ENST00000544246 WIZO95785 1651 aa12.98□□□□□ -0.33
PCDH9-204ENST00000544246 CALD1Q05682 793 aaKnown RBP12.98□□□□□ -0.33
PCDH9-204ENST00000544246 CCDC70Q6NSX1 233 aa12.98□□□□□ -0.33
PCDH9-204ENST00000544246 MARCH6O60337 910 aa12.98□□□□□ -0.33
PCDH9-204ENST00000544246 GPS2Q13227 327 aa12.98□□□□□ -0.33
PCDH9-204ENST00000544246 KRI1Q8N9T8 703 aaKnown RBP12.98□□□□□ -0.33
PCDH9-204ENST00000544246 CLIP1P30622 1438 aa12.97□□□□□ -0.33
PCDH9-204ENST00000544246 VPS53Q5VIR6 699 aa12.97□□□□□ -0.33
PCDH9-204ENST00000544246 TOP2AP11388 1531 aaKnown RBP12.97□□□□□ -0.33
PCDH9-204ENST00000544246 ITPRIPQ8IWB1 547 aa12.97□□□□□ -0.33
PCDH9-204ENST00000544246 TSR1Q2NL82 804 aaKnown RBP12.97□□□□□ -0.33
PCDH9-204ENST00000544246 TPD52L1Q16890 204 aaPredicted RBP12.96□□□□□ -0.33
PCDH9-204ENST00000544246 CFDP1Q9UEE9 299 aaPredicted RBP12.96□□□□□ -0.34
PCDH9-204ENST00000544246 ZNF330Q9Y3S2 320 aaPredicted RBP12.96□□□□□ -0.34
PCDH9-204ENST00000544246 TPM2P07951 284 aa12.95□□□□□ -0.34
PCDH9-204ENST00000544246 SRPK2P78362 688 aaKnown RBP12.95□□□□□ -0.34
PCDH9-204ENST00000544246 HDGFP51858 240 aaKnown RBP12.95□□□□□ -0.34
PCDH9-204ENST00000544246 FBXO3Q9UK99 471 aa12.95□□□□□ -0.34
PCDH9-204ENST00000544246 ANO8Q9HCE9 1232 aaPredicted RBP12.95□□□□□ -0.34
PCDH9-204ENST00000544246 CARMIL1Q5VZK9 1371 aa12.95□□□□□ -0.34
PCDH9-204ENST00000544246 PES1O00541 588 aaKnown RBP12.95□□□□□ -0.34
PCDH9-204ENST00000544246 TCERG1O14776 1098 aaKnown RBP12.95□□□□□ -0.34
PCDH9-204ENST00000544246 G3V3G9 751 aa12.94□□□□□ -0.34
PCDH9-204ENST00000544246 TAF7LQ5H9L4 462 aa12.94□□□□□ -0.34
PCDH9-204ENST00000544246 RRP12Q5JTH9 1297 aaKnown RBP12.94□□□□□ -0.34
PCDH9-204ENST00000544246 DCAF8Q5TAQ9 597 aa12.94□□□□□ -0.34
PCDH9-204ENST00000544246 HSP90AA2PQ14568 343 aaPredicted RBP12.94□□□□□ -0.34
PCDH9-204ENST00000544246 MFAP1P55081 439 aaKnown RBP12.94□□□□□ -0.34
PCDH9-204ENST00000544246 TRIM6-TRIM34B2RNG4 842 aa12.94□□□□□ -0.34
PCDH9-204ENST00000544246 RBM19Q9Y4C8 960 aaKnown RBP12.93□□□□□ -0.34
PCDH9-204ENST00000544246 CHMP3Q9Y3E7 222 aa12.93□□□□□ -0.34
PCDH9-204ENST00000544246 CCAR2Q8N163 923 aaKnown RBP12.93□□□□□ -0.34
PCDH9-204ENST00000544246 PMFBP1Q8TBY8 1022 aa12.93□□□□□ -0.34
PCDH9-204ENST00000544246 SF3A1Q15459 793 aaKnown RBP12.92□□□□□ -0.34
PCDH9-204ENST00000544246 KIF3AQ9Y496 699 aa12.92□□□□□ -0.34
PCDH9-204ENST00000544246 TPM1P09493 284 aa12.92□□□□□ -0.34
PCDH9-204ENST00000544246 CHMP4AQ9BY43 222 aa12.92□□□□□ -0.34
PCDH9-204ENST00000544246 ZNF771Q7L3S4 317 aaPredicted RBP12.91□□□□□ -0.34
PCDH9-204ENST00000544246 KIF16BQ96L93 1317 aa12.91□□□□□ -0.34
PCDH9-204ENST00000544246 JPH4Q96JJ6 628 aa12.91□□□□□ -0.34
PCDH9-204ENST00000544246 MRC2Q9UBG0 1479 aa12.91□□□□□ -0.34
PCDH9-204ENST00000544246 HDAC5Q9UQL6 1122 aa12.91□□□□□ -0.34
PCDH9-204ENST00000544246 KANK1Q14678 1352 aa12.9□□□□□ -0.34
PCDH9-204ENST00000544246 HDGFL2Q7Z4V5 671 aaPredicted RBP12.9□□□□□ -0.34
PCDH9-204ENST00000544246 CSB-PGBD3P0DP91 1061 aa12.9□□□□□ -0.34
PCDH9-204ENST00000544246 NOL8Q76FK4 1167 aaKnown RBP12.9□□□□□ -0.34
PCDH9-204ENST00000544246 NESP48681 1621 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms