RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.6■□□□□ 0.73
VPS33A-207ENST00000542790 PHLDB1Q86UU1 1377 aa19.59■□□□□ 0.73
VPS33A-207ENST00000542790 PPRC1Q5VV67 1664 aaKnown RBP19.59■□□□□ 0.73
VPS33A-207ENST00000542790 SLC4A1APQ9BWU0 796 aaKnown RBP19.58■□□□□ 0.72
VPS33A-207ENST00000542790 MTUS2Q5JR59 1369 aa19.57■□□□□ 0.72
VPS33A-207ENST00000542790 LRRIQ1Q96JM4 1722 aa19.56■□□□□ 0.72
VPS33A-207ENST00000542790 KDM6BO15054 1643 aa19.55■□□□□ 0.72
VPS33A-207ENST00000542790 PLCH2O75038 1416 aa19.55■□□□□ 0.72
VPS33A-207ENST00000542790 NEO1Q92859 1461 aa19.54■□□□□ 0.72
VPS33A-207ENST00000542790 KIF14Q15058 1648 aa19.54■□□□□ 0.72
VPS33A-207ENST00000542790 COL17A1Q9UMD9 1497 aaPredicted RBP19.54■□□□□ 0.72
VPS33A-207ENST00000542790 EFCAB2Q5VUJ9 269 aa19.53■□□□□ 0.72
VPS33A-207ENST00000542790 APLP2Q06481 763 aa19.52■□□□□ 0.72
VPS33A-207ENST00000542790 TTC37Q6PGP7 1564 aa19.52■□□□□ 0.71
VPS33A-207ENST00000542790 FANCAO15360 1455 aa19.51■□□□□ 0.71
VPS33A-207ENST00000542790 ARAP3Q8WWN8 1544 aa19.5■□□□□ 0.71
VPS33A-207ENST00000542790 CACNB1Q02641 598 aaPredicted RBP19.49■□□□□ 0.71
VPS33A-207ENST00000542790 AKNAQ7Z591 1439 aa19.49■□□□□ 0.71
VPS33A-207ENST00000542790 MAP3K1Q13233 1512 aa19.46■□□□□ 0.71
VPS33A-207ENST00000542790 C1QBPQ07021 282 aaKnown RBP19.46■□□□□ 0.71
VPS33A-207ENST00000542790 TIAM1Q13009 1591 aa19.45■□□□□ 0.7
VPS33A-207ENST00000542790 RAPGEF3O95398 923 aa19.45■□□□□ 0.7
VPS33A-207ENST00000542790 EHBP1L1Q8N3D4 1523 aa19.45■□□□□ 0.7
VPS33A-207ENST00000542790 CCNB3Q8WWL7 1395 aa19.44■□□□□ 0.7
VPS33A-207ENST00000542790 U3KPZ7 1027 aaPredicted RBP19.44■□□□□ 0.7
VPS33A-207ENST00000542790 LRRC9Q6ZRR7 1453 aa19.42■□□□□ 0.7
VPS33A-207ENST00000542790 ARHGAP5Q13017 1502 aa19.42■□□□□ 0.7
VPS33A-207ENST00000542790 KANK4Q5T7N3 995 aaPredicted RBP19.42■□□□□ 0.7
VPS33A-207ENST00000542790 CFDP1Q9UEE9 299 aaPredicted RBP19.42■□□□□ 0.7
VPS33A-207ENST00000542790 DENND4BO75064 1496 aaPredicted RBP19.41■□□□□ 0.7
VPS33A-207ENST00000542790 GPATCH8Q9UKJ3 1502 aaKnown RBP19.41■□□□□ 0.7
VPS33A-207ENST00000542790 CFAP74Q9C0B2 1584 aa19.41■□□□□ 0.7
VPS33A-207ENST00000542790 SCAPERQ9BY12 1400 aa19.41■□□□□ 0.7
VPS33A-207ENST00000542790 ADGRL1O94910 1474 aa19.41■□□□□ 0.7
VPS33A-207ENST00000542790 MYO5CQ9NQX4 1742 aa19.39■□□□□ 0.69
VPS33A-207ENST00000542790 ZNF777Q9ULD5 760 aaPredicted RBP19.38■□□□□ 0.69
VPS33A-207ENST00000542790 NCOA2Q15596 1464 aa19.36■□□□□ 0.69
VPS33A-207ENST00000542790 PREX2Q70Z35 1606 aa19.34■□□□□ 0.69
VPS33A-207ENST00000542790 POGZQ7Z3K3 1410 aa19.33■□□□□ 0.68
VPS33A-207ENST00000542790 AFAP1Q8N556 730 aa19.32■□□□□ 0.68
VPS33A-207ENST00000542790 SUPT6HQ7KZ85 1726 aaKnown RBP19.31■□□□□ 0.68
VPS33A-207ENST00000542790 CDC42BPBQ9Y5S2 1711 aa19.3■□□□□ 0.68
VPS33A-207ENST00000542790 PLEKHH2Q8IVE3 1493 aa19.29■□□□□ 0.68
VPS33A-207ENST00000542790 KIAA1107Q9UPP5 1409 aa19.29■□□□□ 0.68
VPS33A-207ENST00000542790 ZNF518AQ6AHZ1 1483 aa19.28■□□□□ 0.68
VPS33A-207ENST00000542790 CDC42BPAQ5VT25 1732 aa19.28■□□□□ 0.68
VPS33A-207ENST00000542790 FRMPD1Q5SYB0 1578 aa19.28■□□□□ 0.68
VPS33A-207ENST00000542790 HNRNPMP52272 730 aaKnown RBP eCLIP19.28■□□□□ 0.68
VPS33A-207ENST00000542790 MAGI2Q86UL8 1455 aa19.28■□□□□ 0.68
VPS33A-207ENST00000542790 ZNF644Q9H582 1327 aaPredicted RBP19.27■□□□□ 0.68
VPS33A-207ENST00000542790 ABCC1P33527 1531 aa19.26■□□□□ 0.67
VPS33A-207ENST00000542790 ARHGEF12Q9NZN5 1544 aa19.26■□□□□ 0.67
VPS33A-207ENST00000542790 MYT1LQ9UL68 1186 aa19.26■□□□□ 0.67
VPS33A-207ENST00000542790 TRAPPC8Q9Y2L5 1435 aa19.25■□□□□ 0.67
VPS33A-207ENST00000542790 ZMYM4Q5VZL5 1548 aa19.25■□□□□ 0.67
VPS33A-207ENST00000542790 MYOM3Q5VTT5 1437 aa19.24■□□□□ 0.67
VPS33A-207ENST00000542790 SAMD9LQ8IVG5 1584 aa19.23■□□□□ 0.67
VPS33A-207ENST00000542790 RICTORQ6R327 1708 aa19.23■□□□□ 0.67
VPS33A-207ENST00000542790 RSPH4AQ5TD94 716 aa19.23■□□□□ 0.67
VPS33A-207ENST00000542790 MIA2Q96PC5 1412 aa19.23■□□□□ 0.67
VPS33A-207ENST00000542790 ITSN2Q9NZM3 1697 aa19.23■□□□□ 0.67
VPS33A-207ENST00000542790 ZFYVE16Q7Z3T8 1539 aa19.2■□□□□ 0.66
VPS33A-207ENST00000542790 SYCP2Q9BX26 1530 aa19.2■□□□□ 0.66
VPS33A-207ENST00000542790 YEATS2Q9ULM3 1422 aa19.2■□□□□ 0.66
VPS33A-207ENST00000542790 MLH3Q9UHC1 1453 aa19.2■□□□□ 0.66
VPS33A-207ENST00000542790 SPAG9O60271 1321 aaKnown RBP19.2■□□□□ 0.66
VPS33A-207ENST00000542790 KDM5CP41229 1560 aa19.19■□□□□ 0.66
VPS33A-207ENST00000542790 ARID4BQ4LE39 1312 aaPredicted RBP19.19■□□□□ 0.66
VPS33A-207ENST00000542790 MBD5Q9P267 1494 aa19.18■□□□□ 0.66
VPS33A-207ENST00000542790 CAMSAP2Q08AD1 1489 aa19.17■□□□□ 0.66
VPS33A-207ENST00000542790 KDM4FA0A1W2PPD8 638 aa19.17■□□□□ 0.66
VPS33A-207ENST00000542790 ATP10AO60312 1499 aa19.16■□□□□ 0.66
VPS33A-207ENST00000542790 ARHGEF40Q8TER5 1519 aa19.16■□□□□ 0.66
VPS33A-207ENST00000542790 TSPY4P0CV99 314 aa19.14■□□□□ 0.65
VPS33A-207ENST00000542790 TSPY10P0CW01 314 aa19.14■□□□□ 0.65
VPS33A-207ENST00000542790 PPARGC1BQ86YN6 1023 aaKnown RBP19.13■□□□□ 0.65
VPS33A-207ENST00000542790 C9orf84Q5VXU9 1444 aa19.13■□□□□ 0.65
VPS33A-207ENST00000542790 HECW2Q9P2P5 1572 aa19.13■□□□□ 0.65
VPS33A-207ENST00000542790 FGD6Q6ZV73 1430 aa19.12■□□□□ 0.65
VPS33A-207ENST00000542790 CCDC141Q6ZP82 1450 aa19.11■□□□□ 0.65
VPS33A-207ENST00000542790 ZBTB22O15209 634 aa19.11■□□□□ 0.65
VPS33A-207ENST00000542790 RTEL1-TNFRSF6BF6WH68 1400 aa19.1■□□□□ 0.65
VPS33A-207ENST00000542790 FOXD4L1Q9NU39 408 aa19.09■□□□□ 0.65
VPS33A-207ENST00000542790 ARHGEF5Q12774 1597 aa19.07■□□□□ 0.64
VPS33A-207ENST00000542790 DIP2CQ9Y2E4 1556 aa19.06■□□□□ 0.64
VPS33A-207ENST00000542790 ATP7AQ04656 1500 aa19.06■□□□□ 0.64
VPS33A-207ENST00000542790 TCOF1Q13428 1488 aaKnown RBP19.06■□□□□ 0.64
VPS33A-207ENST00000542790 FAM50AQ14320 339 aaKnown RBP19.06■□□□□ 0.64
VPS33A-207ENST00000542790 MLECQ14165 292 aa19.05■□□□□ 0.64
VPS33A-207ENST00000542790 KIDINS220Q9ULH0 1771 aa19.04■□□□□ 0.64
VPS33A-207ENST00000542790 PTPN23Q9H3S7 1636 aa19.03■□□□□ 0.64
VPS33A-207ENST00000542790 REREQ9P2R6 1566 aa19.03■□□□□ 0.64
VPS33A-207ENST00000542790 INO80Q9ULG1 1556 aaPredicted RBP19.03■□□□□ 0.64
VPS33A-207ENST00000542790 SPINK5Q9NQ38 1064 aaPredicted RBP19.03■□□□□ 0.64
VPS33A-207ENST00000542790 ABCA6Q8N139 1617 aa19.03■□□□□ 0.64
VPS33A-207ENST00000542790 A2MP01023 1474 aa19.02■□□□□ 0.63
VPS33A-207ENST00000542790 ABCC5O15440 1437 aa19.01■□□□□ 0.63
VPS33A-207ENST00000542790 AGLP35573 1532 aa19■□□□□ 0.63
VPS33A-207ENST00000542790 DHX29Q7Z478 1369 aaKnown RBP19■□□□□ 0.63
VPS33A-207ENST00000542790 MYCNP04198 464 aaPredicted RBP18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms