RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 MTUS2Q5JR59 1369 aa15.59■□□□□ 0.09
CDH3-203ENST00000542274 MAGI3Q5TCQ9 1506 aa15.58■□□□□ 0.09
CDH3-203ENST00000542274 TULP1O00294 542 aaPredicted RBP15.58■□□□□ 0.08
CDH3-203ENST00000542274 EPRSP07814 1512 aaKnown RBP15.58■□□□□ 0.08
CDH3-203ENST00000542274 CARMIL2Q6F5E8 1435 aa15.57■□□□□ 0.08
CDH3-203ENST00000542274 PLB1Q6P1J6 1458 aa15.57■□□□□ 0.08
CDH3-203ENST00000542274 PRG4Q92954 1404 aaPredicted RBP15.57■□□□□ 0.08
CDH3-203ENST00000542274 RAPGEF6Q8TEU7 1601 aa15.57■□□□□ 0.08
CDH3-203ENST00000542274 NUP153P49790 1475 aaKnown RBP15.54■□□□□ 0.08
CDH3-203ENST00000542274 ERCC6L2Q5T890 1561 aa15.54■□□□□ 0.08
CDH3-203ENST00000542274 CCDC18Q5T9S5 1454 aa15.53■□□□□ 0.08
CDH3-203ENST00000542274 ZNF316A6NFI3 1004 aaPredicted RBP15.53■□□□□ 0.08
CDH3-203ENST00000542274 RAB3GAP2Q9H2M9 1393 aa15.53■□□□□ 0.08
CDH3-203ENST00000542274 EHBP1L1Q8N3D4 1523 aa15.51■□□□□ 0.07
CDH3-203ENST00000542274 NCOA2Q15596 1464 aa15.51■□□□□ 0.07
CDH3-203ENST00000542274 DHX37Q8IY37 1157 aaKnown RBP15.51■□□□□ 0.07
CDH3-203ENST00000542274 SUPT6HQ7KZ85 1726 aaKnown RBP15.5■□□□□ 0.07
CDH3-203ENST00000542274 SHROOM2Q13796 1616 aa15.49■□□□□ 0.07
CDH3-203ENST00000542274 CLASP1Q7Z460 1538 aa15.48■□□□□ 0.07
CDH3-203ENST00000542274 HOMEZQ8IX15 550 aa15.47■□□□□ 0.07
CDH3-203ENST00000542274 RSPH6AQ9H0K4 717 aa15.47■□□□□ 0.07
CDH3-203ENST00000542274 PTPRGP23470 1445 aa15.46■□□□□ 0.07
CDH3-203ENST00000542274 PAXIP1Q6ZW49 1069 aaPredicted RBP15.45■□□□□ 0.06
CDH3-203ENST00000542274 ABCA8O94911 1581 aa15.45■□□□□ 0.06
CDH3-203ENST00000542274 CHMP4AQ9BY43 222 aa15.45■□□□□ 0.06
CDH3-203ENST00000542274 FGD6Q6ZV73 1430 aa15.45■□□□□ 0.06
CDH3-203ENST00000542274 SETD5Q9C0A6 1442 aa15.43■□□□□ 0.06
CDH3-203ENST00000542274 MYOM3Q5VTT5 1437 aa15.42■□□□□ 0.06
CDH3-203ENST00000542274 ARHGEF11O15085 1522 aa15.41■□□□□ 0.06
CDH3-203ENST00000542274 PTPRKQ15262 1439 aa15.4■□□□□ 0.06
CDH3-203ENST00000542274 MAPKBP1O60336 1514 aa15.4■□□□□ 0.06
CDH3-203ENST00000542274 SIN3AQ96ST3 1273 aa15.4■□□□□ 0.06
CDH3-203ENST00000542274 ATP10BO94823 1461 aa15.39■□□□□ 0.05
CDH3-203ENST00000542274 KIF14Q15058 1648 aa15.39■□□□□ 0.05
CDH3-203ENST00000542274 PTPN23Q9H3S7 1636 aa15.38■□□□□ 0.05
CDH3-203ENST00000542274 CDK11AQ9UQ88 783 aaPredicted RBP15.37■□□□□ 0.05
CDH3-203ENST00000542274 TROQ12816 1431 aaPredicted RBP15.36■□□□□ 0.05
CDH3-203ENST00000542274 FANCIQ9NVI1 1328 aa15.36■□□□□ 0.05
CDH3-203ENST00000542274 UACAQ9BZF9 1416 aa15.35■□□□□ 0.05
CDH3-203ENST00000542274 MIER1Q8N108 512 aa15.35■□□□□ 0.05
CDH3-203ENST00000542274 HAP1P54257 671 aaPredicted RBP15.34■□□□□ 0.05
CDH3-203ENST00000542274 CHIC2Q9UKJ5 165 aa15.34■□□□□ 0.05
CDH3-203ENST00000542274 BRD2P25440 801 aaKnown RBP15.33■□□□□ 0.05
CDH3-203ENST00000542274 ZNF644Q9H582 1327 aaPredicted RBP15.32■□□□□ 0.04
CDH3-203ENST00000542274 PLEKHD1A6NEE1 506 aa15.32■□□□□ 0.04
CDH3-203ENST00000542274 OSCARQ8IYS5 282 aa15.31■□□□□ 0.04
CDH3-203ENST00000542274 RRP7BPQ9NSQ0 103 aa15.3■□□□□ 0.04
CDH3-203ENST00000542274 ABCC2Q92887 1545 aa15.3■□□□□ 0.04
CDH3-203ENST00000542274 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.3■□□□□ 0.04
CDH3-203ENST00000542274 ADCY10Q96PN6 1610 aa15.29■□□□□ 0.04
CDH3-203ENST00000542274 NPM2Q86SE8 214 aaKnown RBP15.29■□□□□ 0.04
CDH3-203ENST00000542274 ZNF777Q9ULD5 760 aaPredicted RBP15.29■□□□□ 0.04
CDH3-203ENST00000542274 RSPH4AQ5TD94 716 aa15.28■□□□□ 0.04
CDH3-203ENST00000542274 SAMD1Q6SPF0 538 aaPredicted RBP15.28■□□□□ 0.04
CDH3-203ENST00000542274 TCOF1Q13428 1488 aaKnown RBP15.27■□□□□ 0.04
CDH3-203ENST00000542274 MIA2Q96PC5 1412 aa15.26■□□□□ 0.03
CDH3-203ENST00000542274 BCANQ96GW7 911 aa15.26■□□□□ 0.03
CDH3-203ENST00000542274 GPATCH8Q9UKJ3 1502 aaKnown RBP15.26■□□□□ 0.03
CDH3-203ENST00000542274 CDC42BPAQ5VT25 1732 aa15.25■□□□□ 0.03
CDH3-203ENST00000542274 NBR1Q14596 966 aa15.25■□□□□ 0.03
CDH3-203ENST00000542274 CFDP1Q9UEE9 299 aaPredicted RBP15.25■□□□□ 0.03
CDH3-203ENST00000542274 ZCCHC11Q5TAX3 1644 aaKnown RBP15.25■□□□□ 0.03
CDH3-203ENST00000542274 ITSN2Q9NZM3 1697 aa15.24■□□□□ 0.03
CDH3-203ENST00000542274 NAIPQ13075 1403 aa15.24■□□□□ 0.03
CDH3-203ENST00000542274 NAP1L5Q96NT1 182 aaPredicted RBP15.24■□□□□ 0.03
CDH3-203ENST00000542274 KCNH8Q96L42 1107 aa15.23■□□□□ 0.03
CDH3-203ENST00000542274 ABCC10Q5T3U5 1492 aa15.23■□□□□ 0.03
CDH3-203ENST00000542274 HFM1A2PYH4 1435 aa15.23■□□□□ 0.03
CDH3-203ENST00000542274 CAMSAP2Q08AD1 1489 aa15.22■□□□□ 0.03
CDH3-203ENST00000542274 HIRIP3Q9BW71 556 aaPredicted RBP15.22■□□□□ 0.03
CDH3-203ENST00000542274 NAP1L2Q9ULW6 460 aaPredicted RBP15.2■□□□□ 0.02
CDH3-203ENST00000542274 TTC37Q6PGP7 1564 aa15.2■□□□□ 0.02
CDH3-203ENST00000542274 DAPK1P53355 1430 aa15.19■□□□□ 0.02
CDH3-203ENST00000542274 KDM6BO15054 1643 aa15.18■□□□□ 0.02
CDH3-203ENST00000542274 UHRF1BP1LA0JNW5 1464 aa15.18■□□□□ 0.02
CDH3-203ENST00000542274 DNMT1P26358 1616 aaKnown RBP15.18■□□□□ 0.02
CDH3-203ENST00000542274 ABCC5O15440 1437 aa15.18■□□□□ 0.02
CDH3-203ENST00000542274 KDM5BQ9UGL1 1544 aa15.17■□□□□ 0.02
CDH3-203ENST00000542274 C14orf37Q86TY3 774 aa15.17■□□□□ 0.02
CDH3-203ENST00000542274 CDC42BPBQ9Y5S2 1711 aa15.17■□□□□ 0.02
CDH3-203ENST00000542274 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.16■□□□□ 0.02
CDH3-203ENST00000542274 TRIM52Q96A61 297 aa15.16■□□□□ 0.02
CDH3-203ENST00000542274 FOXD1Q16676 465 aa15.15■□□□□ 0.02
CDH3-203ENST00000542274 ZNF326Q5BKZ1 582 aaKnown RBP15.15■□□□□ 0.02
CDH3-203ENST00000542274 GCC2Q8IWJ2 1684 aa15.14■□□□□ 0.01
CDH3-203ENST00000542274 CHMP4BQ9H444 224 aaKnown RBP15.14■□□□□ 0.01
CDH3-203ENST00000542274 PREX2Q70Z35 1606 aa15.14■□□□□ 0.01
CDH3-203ENST00000542274 HNRNPMP52272 730 aaKnown RBP eCLIP15.12■□□□□ 0.01
CDH3-203ENST00000542274 SAMD9LQ8IVG5 1584 aa15.11■□□□□ 0.01
CDH3-203ENST00000542274 MYO5CQ9NQX4 1742 aa15.11■□□□□ 0.01
CDH3-203ENST00000542274 ARHGAP5Q13017 1502 aa15.11■□□□□ 0.01
CDH3-203ENST00000542274 DENND4BO75064 1496 aaPredicted RBP15.11■□□□□ 0.01
CDH3-203ENST00000542274 PPP1R15AO75807 674 aaPredicted RBP15.11■□□□□ 0.01
CDH3-203ENST00000542274 CROCC2H7BZ55 1655 aa15.1■□□□□ 0.01
CDH3-203ENST00000542274 RTL5Q5HYW3 569 aaPredicted RBP15.09■□□□□ 0.01
CDH3-203ENST00000542274 TONSLQ96HA7 1378 aa15.09■□□□□ 0.01
CDH3-203ENST00000542274 AKNAQ7Z591 1439 aa15.08■□□□□ 0.01
CDH3-203ENST00000542274 ADGBQ8N7X0 1667 aa15.07■□□□□ 0
CDH3-203ENST00000542274 C11orf95C9JLR9 678 aaPredicted RBP15.07■□□□□ 0
CDH3-203ENST00000542274 BBXQ8WY36 941 aaPredicted RBP15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms