RNA–Protein interactions for RNA: ENST00000541963.5

CPSF7-220, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 4 BASIC

Gene CPSF7, Length 549 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-220ENST00000541963 IER5LQ5T953 404 aa10.18□□□□□ -0.78
CPSF7-220ENST00000541963 ATMINO43313 823 aaPredicted RBP10.17□□□□□ -0.78
CPSF7-220ENST00000541963 OCEL1Q9H607 264 aa10.17□□□□□ -0.78
CPSF7-220ENST00000541963 DCBLD2Q96PD2 775 aa10.16□□□□□ -0.78
CPSF7-220ENST00000541963 PLCG2P16885 1265 aa10.15□□□□□ -0.78
CPSF7-220ENST00000541963 ASTLQ6HA08 431 aaPredicted RBP10.15□□□□□ -0.78
CPSF7-220ENST00000541963 TMC2Q8TDI7 906 aa10.14□□□□□ -0.79
CPSF7-220ENST00000541963 GPHNQ9NQX3 736 aaPredicted RBP10.14□□□□□ -0.79
CPSF7-220ENST00000541963 GABBR2O75899 941 aa10.13□□□□□ -0.79
CPSF7-220ENST00000541963 SMYD5Q6GMV2 418 aa10.13□□□□□ -0.79
CPSF7-220ENST00000541963 DPY19L2Q6NUT2 758 aa10.13□□□□□ -0.79
CPSF7-220ENST00000541963 SEC24BO95487 1268 aa10.12□□□□□ -0.79
CPSF7-220ENST00000541963 MICALL2Q8IY33 904 aa10.12□□□□□ -0.79
CPSF7-220ENST00000541963 L3MBTL3Q96JM7 780 aaPredicted RBP10.12□□□□□ -0.79
CPSF7-220ENST00000541963 IRX5P78411 483 aaPredicted RBP10.11□□□□□ -0.79
CPSF7-220ENST00000541963 PPP1R15BQ5SWA1 713 aa10.11□□□□□ -0.79
CPSF7-220ENST00000541963 LMOD2Q6P5Q4 547 aa10.11□□□□□ -0.79
CPSF7-220ENST00000541963 BOLA1Q9Y3E2 137 aa10.11□□□□□ -0.79
CPSF7-220ENST00000541963 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.1□□□□□ -0.79
CPSF7-220ENST00000541963 PDCD7Q8N8D1 485 aaKnown RBP10.1□□□□□ -0.79
CPSF7-220ENST00000541963 EIF4G1Q04637 1599 aaKnown RBP10.09□□□□□ -0.79
CPSF7-220ENST00000541963 CAMK2BQ13554 666 aa10.08□□□□□ -0.8
CPSF7-220ENST00000541963 ARIH1Q9Y4X5 557 aaPredicted RBP10.08□□□□□ -0.8
CPSF7-220ENST00000541963 SEMA3EO15041 775 aa10.07□□□□□ -0.8
CPSF7-220ENST00000541963 POTEHQ6S545 545 aa10.07□□□□□ -0.8
CPSF7-220ENST00000541963 CC2D2AQ9P2K1 1620 aa10.07□□□□□ -0.8
CPSF7-220ENST00000541963 TESPA1A2RU30 521 aaPredicted RBP10.05□□□□□ -0.8
CPSF7-220ENST00000541963 SLC39A7Q92504 469 aa10.05□□□□□ -0.8
CPSF7-220ENST00000541963 TMEM121BQ9BXQ6 578 aaPredicted RBP10.04□□□□□ -0.8
CPSF7-220ENST00000541963 DSG2Q14126 1118 aa10.03□□□□□ -0.8
CPSF7-220ENST00000541963 CECR2Q9BXF3 1484 aa10.03□□□□□ -0.8
CPSF7-220ENST00000541963 C7P10643 843 aa10.02□□□□□ -0.81
CPSF7-220ENST00000541963 FOXK1P85037 733 aa10.02□□□□□ -0.81
CPSF7-220ENST00000541963 SPDYE16A6NNV3 312 aaPredicted RBP10□□□□□ -0.81
CPSF7-220ENST00000541963 PLPP6Q8IY26 295 aa10□□□□□ -0.81
CPSF7-220ENST00000541963 C2orf72A6NCS6 295 aa9.99□□□□□ -0.81
CPSF7-220ENST00000541963 DPYSL4O14531 572 aa9.97□□□□□ -0.81
CPSF7-220ENST00000541963 PELP1Q8IZL8 1130 aaKnown RBP9.97□□□□□ -0.81
CPSF7-220ENST00000541963 MAP3K9P80192 1104 aa9.96□□□□□ -0.82
CPSF7-220ENST00000541963 C3orf67Q6ZVT6 689 aa9.95□□□□□ -0.82
CPSF7-220ENST00000541963 COLQQ9Y215 455 aaPredicted RBP9.95□□□□□ -0.82
CPSF7-220ENST00000541963 ZC3H15Q8WU90 426 aaKnown RBP9.94□□□□□ -0.82
CPSF7-220ENST00000541963 EMILIN3Q9NT22 766 aa9.94□□□□□ -0.82
CPSF7-220ENST00000541963 METRNQ9UJH8 293 aa9.94□□□□□ -0.82
CPSF7-220ENST00000541963 KIF3CO14782 793 aa9.93□□□□□ -0.82
CPSF7-220ENST00000541963 TBC1D12O60347 775 aa9.91□□□□□ -0.82
CPSF7-220ENST00000541963 PDIA6Q15084 440 aa9.91□□□□□ -0.82
CPSF7-220ENST00000541963 SP7Q8TDD2 431 aaPredicted RBP9.9□□□□□ -0.82
CPSF7-220ENST00000541963 ZNF316A6NFI3 1004 aaPredicted RBP9.89□□□□□ -0.83
CPSF7-220ENST00000541963 MLLT3P42568 568 aaPredicted RBP9.89□□□□□ -0.83
CPSF7-220ENST00000541963 GPIHBP1Q8IV16 184 aa9.88□□□□□ -0.83
CPSF7-220ENST00000541963 UPF1Q92900 1129 aaKnown RBP eCLIP9.88□□□□□ -0.83
CPSF7-220ENST00000541963 BAZ1AQ9NRL2 1556 aaPredicted RBP9.88□□□□□ -0.83
CPSF7-220ENST00000541963 NCAPD3P42695 1498 aa9.86□□□□□ -0.83
CPSF7-220ENST00000541963 SMARCA4P51532 1647 aa9.86□□□□□ -0.83
CPSF7-220ENST00000541963 RBM26Q5T8P6 1007 aaKnown RBP9.86□□□□□ -0.83
CPSF7-220ENST00000541963 SMARCA2P51531 1590 aa9.85□□□□□ -0.83
CPSF7-220ENST00000541963 TMEM92Q6UXU6 159 aa9.85□□□□□ -0.83
CPSF7-220ENST00000541963 KRI1Q8N9T8 703 aaKnown RBP9.85□□□□□ -0.83
CPSF7-220ENST00000541963 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.85□□□□□ -0.83
CPSF7-220ENST00000541963 ATAD2BQ9ULI0 1458 aa9.85□□□□□ -0.83
CPSF7-220ENST00000541963 POTEFA5A3E0 1075 aa9.84□□□□□ -0.83
CPSF7-220ENST00000541963 GRXCR2A6NFK2 248 aa9.84□□□□□ -0.83
CPSF7-220ENST00000541963 ZMYND10O75800 440 aa9.84□□□□□ -0.83
CPSF7-220ENST00000541963 POTEIP0CG38 1075 aa9.83□□□□□ -0.84
CPSF7-220ENST00000541963 OXER1Q8TDS5 423 aa9.83□□□□□ -0.84
CPSF7-220ENST00000541963 SLC24A3Q9HC58 644 aa9.82□□□□□ -0.84
CPSF7-220ENST00000541963 BARGINQ6ZT62 677 aa9.81□□□□□ -0.84
CPSF7-220ENST00000541963 EVI5O60447 810 aa9.79□□□□□ -0.84
CPSF7-220ENST00000541963 HMGXB3Q12766 1538 aa9.78□□□□□ -0.84
CPSF7-220ENST00000541963 NUTM2FA1L443 756 aa9.78□□□□□ -0.84
CPSF7-220ENST00000541963 PTCD2Q8WV60 388 aaKnown RBP9.78□□□□□ -0.84
CPSF7-220ENST00000541963 MROH2BQ7Z745 1585 aa9.78□□□□□ -0.84
CPSF7-220ENST00000541963 BAZ1BQ9UIG0 1483 aaKnown RBP9.78□□□□□ -0.84
CPSF7-220ENST00000541963 PEG3Q9GZU2 1588 aa9.77□□□□□ -0.85
CPSF7-220ENST00000541963 PTGER2P43116 358 aa9.77□□□□□ -0.85
CPSF7-220ENST00000541963 NEUROD2Q15784 382 aa9.77□□□□□ -0.85
CPSF7-220ENST00000541963 TMEM132AQ24JP5 1023 aa9.77□□□□□ -0.85
CPSF7-220ENST00000541963 AK7Q96M32 723 aa9.77□□□□□ -0.85
CPSF7-220ENST00000541963 SLC34A2O95436 690 aa9.76□□□□□ -0.85
CPSF7-220ENST00000541963 DDX12PQ92771 950 aa9.76□□□□□ -0.85
CPSF7-220ENST00000541963 BRPF1P55201 1214 aaPredicted RBP9.73□□□□□ -0.85
CPSF7-220ENST00000541963 OSBPP22059 807 aa9.72□□□□□ -0.85
CPSF7-220ENST00000541963 DAXXQ9UER7 740 aaPredicted RBP9.71□□□□□ -0.86
CPSF7-220ENST00000541963 FCHSD2O94868 740 aa9.7□□□□□ -0.86
CPSF7-220ENST00000541963 EPAS1Q99814 870 aa9.69□□□□□ -0.86
CPSF7-220ENST00000541963 ANO8Q9HCE9 1232 aaPredicted RBP9.69□□□□□ -0.86
CPSF7-220ENST00000541963 MINK1Q8N4C8 1332 aaPredicted RBP9.68□□□□□ -0.86
CPSF7-220ENST00000541963 MAMSTRQ6ZN01 415 aa9.68□□□□□ -0.86
CPSF7-220ENST00000541963 SCUBE2Q9NQ36 999 aa9.68□□□□□ -0.86
CPSF7-220ENST00000541963 PCDHGA4Q9Y5G9 962 aa9.68□□□□□ -0.86
CPSF7-220ENST00000541963 RIMBP2O15034 1052 aa9.67□□□□□ -0.86
CPSF7-220ENST00000541963 HIC1Q14526 733 aa9.67□□□□□ -0.86
CPSF7-220ENST00000541963 DOK7Q18PE1 504 aa9.67□□□□□ -0.86
CPSF7-220ENST00000541963 WIZO95785 1651 aa9.67□□□□□ -0.86
CPSF7-220ENST00000541963 RSF1Q96T23 1441 aaPredicted RBP9.66□□□□□ -0.86
CPSF7-220ENST00000541963 GNPATO15228 680 aa9.66□□□□□ -0.86
CPSF7-220ENST00000541963 PHF14O94880 888 aa9.66□□□□□ -0.86
CPSF7-220ENST00000541963 GTF3C3Q9Y5Q9 886 aa9.65□□□□□ -0.86
CPSF7-220ENST00000541963 ERCC6Q03468 1493 aa9.65□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms