RNA–Protein interactions for RNA: ENST00000541341.5

CHFR-219, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-219ENST00000541341 FER1L4A9Z1Z3 1794 aa15.74■□□□□ 0.11
CHFR-219ENST00000541341 DENND4BO75064 1496 aaPredicted RBP15.73■□□□□ 0.11
CHFR-219ENST00000541341 CENPBP07199 599 aaPredicted RBP15.72■□□□□ 0.11
CHFR-219ENST00000541341 UBTFP17480 764 aaKnown RBP15.71■□□□□ 0.11
CHFR-219ENST00000541341 MLECQ14165 292 aa15.71■□□□□ 0.11
CHFR-219ENST00000541341 KIF14Q15058 1648 aa15.71■□□□□ 0.11
CHFR-219ENST00000541341 HECW1Q76N89 1606 aa15.71■□□□□ 0.11
CHFR-219ENST00000541341 PCF11O94913 1555 aaKnown RBP15.7■□□□□ 0.1
CHFR-219ENST00000541341 ZFYVE16Q7Z3T8 1539 aa15.7■□□□□ 0.1
CHFR-219ENST00000541341 YEATS2Q9ULM3 1422 aa15.69■□□□□ 0.1
CHFR-219ENST00000541341 LMTK3Q96Q04 1460 aa15.67■□□□□ 0.1
CHFR-219ENST00000541341 HSPA2P54652 639 aa15.67■□□□□ 0.1
CHFR-219ENST00000541341 ZMYM4Q5VZL5 1548 aa15.66■□□□□ 0.1
CHFR-219ENST00000541341 ARHGAP35Q9NRY4 1499 aa15.65■□□□□ 0.1
CHFR-219ENST00000541341 CEP162Q5TB80 1403 aa15.64■□□□□ 0.09
CHFR-219ENST00000541341 SCAPERQ9BY12 1400 aa15.63■□□□□ 0.09
CHFR-219ENST00000541341 CDC42BPBQ9Y5S2 1711 aa15.63■□□□□ 0.09
CHFR-219ENST00000541341 CLIP1P30622 1438 aa15.61■□□□□ 0.09
CHFR-219ENST00000541341 POGZQ7Z3K3 1410 aa15.6■□□□□ 0.09
CHFR-219ENST00000541341 FBXO41Q8TF61 875 aa15.6■□□□□ 0.09
CHFR-219ENST00000541341 PLCH2O75038 1416 aa15.6■□□□□ 0.09
CHFR-219ENST00000541341 ARHGAP5Q13017 1502 aa15.59■□□□□ 0.09
CHFR-219ENST00000541341 MYT1LQ9UL68 1186 aa15.58■□□□□ 0.08
CHFR-219ENST00000541341 FMN1Q68DA7 1419 aa15.58■□□□□ 0.08
CHFR-219ENST00000541341 PREX1Q8TCU6 1659 aa15.57■□□□□ 0.08
CHFR-219ENST00000541341 CEBPAP49715 358 aaPredicted RBP15.56■□□□□ 0.08
CHFR-219ENST00000541341 CDC42BPAQ5VT25 1732 aa15.55■□□□□ 0.08
CHFR-219ENST00000541341 MAGI2Q86UL8 1455 aa15.55■□□□□ 0.08
CHFR-219ENST00000541341 ACIN1Q9UKV3 1341 aaKnown RBP15.55■□□□□ 0.08
CHFR-219ENST00000541341 ITSN2Q9NZM3 1697 aa15.54■□□□□ 0.08
CHFR-219ENST00000541341 ABCA6Q8N139 1617 aa15.54■□□□□ 0.08
CHFR-219ENST00000541341 SCAF1Q9H7N4 1312 aaKnown RBP15.54■□□□□ 0.08
CHFR-219ENST00000541341 EFCAB2Q5VUJ9 269 aa15.54■□□□□ 0.08
CHFR-219ENST00000541341 ATP10AO60312 1499 aa15.53■□□□□ 0.08
CHFR-219ENST00000541341 C9orf84Q5VXU9 1444 aa15.53■□□□□ 0.08
CHFR-219ENST00000541341 AFAP1Q8N556 730 aa15.53■□□□□ 0.08
CHFR-219ENST00000541341 PREX2Q70Z35 1606 aa15.53■□□□□ 0.08
CHFR-219ENST00000541341 DIP2CQ9Y2E4 1556 aa15.53■□□□□ 0.08
CHFR-219ENST00000541341 ARHGEF12Q9NZN5 1544 aa15.53■□□□□ 0.08
CHFR-219ENST00000541341 TROQ12816 1431 aaPredicted RBP15.52■□□□□ 0.08
CHFR-219ENST00000541341 C3P01024 1663 aa15.52■□□□□ 0.08
CHFR-219ENST00000541341 STRCQ7RTU9 1775 aa15.52■□□□□ 0.07
CHFR-219ENST00000541341 CDK11AQ9UQ88 783 aaPredicted RBP15.51■□□□□ 0.07
CHFR-219ENST00000541341 CCER1Q8TC90 406 aaPredicted RBP15.5■□□□□ 0.07
CHFR-219ENST00000541341 KDM5CP41229 1560 aa15.49■□□□□ 0.07
CHFR-219ENST00000541341 ZNF518AQ6AHZ1 1483 aa15.49■□□□□ 0.07
CHFR-219ENST00000541341 KIDINS220Q9ULH0 1771 aa15.47■□□□□ 0.07
CHFR-219ENST00000541341 SUPT6HQ7KZ85 1726 aaKnown RBP15.47■□□□□ 0.07
CHFR-219ENST00000541341 VPS8Q8N3P4 1428 aa15.46■□□□□ 0.07
CHFR-219ENST00000541341 ABCC1P33527 1531 aa15.46■□□□□ 0.07
CHFR-219ENST00000541341 FYCO1Q9BQS8 1478 aa15.46■□□□□ 0.06
CHFR-219ENST00000541341 TRAPPC8Q9Y2L5 1435 aa15.45■□□□□ 0.06
CHFR-219ENST00000541341 CASKIN1Q8WXD9 1431 aa15.44■□□□□ 0.06
CHFR-219ENST00000541341 SETD1BQ9UPS6 1966 aaKnown RBP15.44■□□□□ 0.06
CHFR-219ENST00000541341 ZNF777Q9ULD5 760 aaPredicted RBP15.44■□□□□ 0.06
CHFR-219ENST00000541341 CERKQ8TCT0 537 aa15.43■□□□□ 0.06
CHFR-219ENST00000541341 CLSPNQ9HAW4 1339 aa15.43■□□□□ 0.06
CHFR-219ENST00000541341 SAMD9LQ8IVG5 1584 aa15.41■□□□□ 0.06
CHFR-219ENST00000541341 CCDC18Q5T9S5 1454 aa15.41■□□□□ 0.06
CHFR-219ENST00000541341 DIEXFQ68CQ4 756 aaKnown RBP15.41■□□□□ 0.06
CHFR-219ENST00000541341 SYCP2Q9BX26 1530 aa15.39■□□□□ 0.05
CHFR-219ENST00000541341 CLTCQ00610 1675 aaKnown RBP15.39■□□□□ 0.05
CHFR-219ENST00000541341 UHRF1BP1Q6BDS2 1440 aa15.39■□□□□ 0.05
CHFR-219ENST00000541341 REREQ9P2R6 1566 aa15.39■□□□□ 0.05
CHFR-219ENST00000541341 MLH3Q9UHC1 1453 aa15.38■□□□□ 0.05
CHFR-219ENST00000541341 ESF1Q9H501 851 aaKnown RBP15.37■□□□□ 0.05
CHFR-219ENST00000541341 MAP3K1Q13233 1512 aa15.37■□□□□ 0.05
CHFR-219ENST00000541341 HNRNPMP52272 730 aaKnown RBP eCLIP15.35■□□□□ 0.055e-8■■■■□ 21.8
CHFR-219ENST00000541341 TIAM1Q13009 1591 aa15.34■□□□□ 0.05
CHFR-219ENST00000541341 MROH2AA6NES4 1674 aa15.33■□□□□ 0.04
CHFR-219ENST00000541341 AGLP35573 1532 aa15.33■□□□□ 0.04
CHFR-219ENST00000541341 GPATCH8Q9UKJ3 1502 aaKnown RBP15.32■□□□□ 0.04
CHFR-219ENST00000541341 ATP7AQ04656 1500 aa15.31■□□□□ 0.04
CHFR-219ENST00000541341 CAMSAP1Q5T5Y3 1602 aa15.3■□□□□ 0.04
CHFR-219ENST00000541341 INO80Q9ULG1 1556 aaPredicted RBP15.3■□□□□ 0.04
CHFR-219ENST00000541341 MYO3AQ8NEV4 1616 aa15.29■□□□□ 0.04
CHFR-219ENST00000541341 SPAG9O60271 1321 aaKnown RBP15.29■□□□□ 0.04
CHFR-219ENST00000541341 ADGBQ8N7X0 1667 aa15.28■□□□□ 0.04
CHFR-219ENST00000541341 ZNF316A6NFI3 1004 aaPredicted RBP15.28■□□□□ 0.04
CHFR-219ENST00000541341 DMRT2Q9Y5R5 561 aa15.27■□□□□ 0.04
CHFR-219ENST00000541341 CCNB3Q8WWL7 1395 aa15.26■□□□□ 0.03
CHFR-219ENST00000541341 CFDP1Q9UEE9 299 aaPredicted RBP15.26■□□□□ 0.03
CHFR-219ENST00000541341 ZNF644Q9H582 1327 aaPredicted RBP15.25■□□□□ 0.03
CHFR-219ENST00000541341 GGT6Q6P531 493 aa15.25■□□□□ 0.03
CHFR-219ENST00000541341 EHBP1L1Q8N3D4 1523 aa15.25■□□□□ 0.03
CHFR-219ENST00000541341 LTBP4Q8N2S1 1624 aa15.25■□□□□ 0.03
CHFR-219ENST00000541341 MTUS2Q5JR59 1369 aa15.24■□□□□ 0.03
CHFR-219ENST00000541341 PLXNC1O60486 1568 aa15.24■□□□□ 0.03
CHFR-219ENST00000541341 NCKAP5LQ9HCH0 1330 aa15.24■□□□□ 0.03
CHFR-219ENST00000541341 NEUROD1Q13562 356 aa15.24■□□□□ 0.03
CHFR-219ENST00000541341 GTF3C3Q9Y5Q9 886 aa15.24■□□□□ 0.03
CHFR-219ENST00000541341 ZNF142P52746 1687 aaPredicted RBP15.24■□□□□ 0.03
CHFR-219ENST00000541341 NCOA1Q15788 1441 aa15.24■□□□□ 0.03
CHFR-219ENST00000541341 CNTLNQ9NXG0 1405 aa15.24■□□□□ 0.03
CHFR-219ENST00000541341 ZMYM3Q14202 1370 aa15.24■□□□□ 0.03
CHFR-219ENST00000541341 DISP3Q9P2K9 1392 aa15.24■□□□□ 0.03
CHFR-219ENST00000541341 A2MP01023 1474 aa15.23■□□□□ 0.03
CHFR-219ENST00000541341 PTPRTO14522 1441 aa15.23■□□□□ 0.03
CHFR-219ENST00000541341 LRRC9Q6ZRR7 1453 aa15.21■□□□□ 0.03
CHFR-219ENST00000541341 CEP170BQ9Y4F5 1589 aaPredicted RBP15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms