RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-215ENST00000540904 AKNAQ7Z591 1439 aa14.62□□□□□ -0.07
SNHG1-215ENST00000540904 EFCAB2Q5VUJ9 269 aa14.61□□□□□ -0.07
SNHG1-215ENST00000540904 ARHGAP5Q13017 1502 aa14.58□□□□□ -0.08
SNHG1-215ENST00000540904 CFAP74Q9C0B2 1584 aa14.58□□□□□ -0.08
SNHG1-215ENST00000540904 DENND4BO75064 1496 aaPredicted RBP14.57□□□□□ -0.08
SNHG1-215ENST00000540904 MYO5CQ9NQX4 1742 aa14.57□□□□□ -0.08
SNHG1-215ENST00000540904 ADGRL1O94910 1474 aa14.57□□□□□ -0.08
SNHG1-215ENST00000540904 SCAPERQ9BY12 1400 aa14.56□□□□□ -0.08
SNHG1-215ENST00000540904 CCNB3Q8WWL7 1395 aa14.55□□□□□ -0.08
SNHG1-215ENST00000540904 EHBP1L1Q8N3D4 1523 aa14.55□□□□□ -0.08
SNHG1-215ENST00000540904 TIAM1Q13009 1591 aa14.54□□□□□ -0.08
SNHG1-215ENST00000540904 FRMPD1Q5SYB0 1578 aa14.53□□□□□ -0.08
SNHG1-215ENST00000540904 GPATCH8Q9UKJ3 1502 aaKnown RBP14.53□□□□□ -0.08
SNHG1-215ENST00000540904 APLP2Q06481 763 aa14.53□□□□□ -0.08
SNHG1-215ENST00000540904 ZNF777Q9ULD5 760 aaPredicted RBP14.53□□□□□ -0.08
SNHG1-215ENST00000540904 CFDP1Q9UEE9 299 aaPredicted RBP14.52□□□□□ -0.09
SNHG1-215ENST00000540904 PREX2Q70Z35 1606 aa14.52□□□□□ -0.09
SNHG1-215ENST00000540904 POGZQ7Z3K3 1410 aa14.51□□□□□ -0.09
SNHG1-215ENST00000540904 KANK4Q5T7N3 995 aaPredicted RBP14.51□□□□□ -0.09
SNHG1-215ENST00000540904 LRRC9Q6ZRR7 1453 aa14.5□□□□□ -0.09
SNHG1-215ENST00000540904 CDC42BPBQ9Y5S2 1711 aa14.5□□□□□ -0.09
SNHG1-215ENST00000540904 AFAP1Q8N556 730 aa14.5□□□□□ -0.09
SNHG1-215ENST00000540904 KDM4FA0A1W2PPD8 638 aa14.49□□□□□ -0.09
SNHG1-215ENST00000540904 MAP3K1Q13233 1512 aa14.49□□□□□ -0.09
SNHG1-215ENST00000540904 CDC42BPAQ5VT25 1732 aa14.49□□□□□ -0.09
SNHG1-215ENST00000540904 RICTORQ6R327 1708 aa14.49□□□□□ -0.09
SNHG1-215ENST00000540904 NCOA2Q15596 1464 aa14.48□□□□□ -0.09
SNHG1-215ENST00000540904 ZNF518AQ6AHZ1 1483 aa14.47□□□□□ -0.09
SNHG1-215ENST00000540904 MYT1LQ9UL68 1186 aa14.47□□□□□ -0.09
SNHG1-215ENST00000540904 ARHGEF12Q9NZN5 1544 aa14.46□□□□□ -0.09
SNHG1-215ENST00000540904 HNRNPMP52272 730 aaKnown RBP eCLIP14.46□□□□□ -0.09
SNHG1-215ENST00000540904 YEATS2Q9ULM3 1422 aa14.46□□□□□ -0.09
SNHG1-215ENST00000540904 TRAPPC8Q9Y2L5 1435 aa14.46□□□□□ -0.09
SNHG1-215ENST00000540904 ABCC1P33527 1531 aa14.46□□□□□ -0.1
SNHG1-215ENST00000540904 ZMYM4Q5VZL5 1548 aa14.46□□□□□ -0.1
SNHG1-215ENST00000540904 ZNF644Q9H582 1327 aaPredicted RBP14.45□□□□□ -0.1
SNHG1-215ENST00000540904 SUPT6HQ7KZ85 1726 aaKnown RBP14.45□□□□□ -0.1
SNHG1-215ENST00000540904 MAGI2Q86UL8 1455 aa14.44□□□□□ -0.1
SNHG1-215ENST00000540904 ARID4BQ4LE39 1312 aaPredicted RBP14.44□□□□□ -0.1
SNHG1-215ENST00000540904 SAMD9LQ8IVG5 1584 aa14.44□□□□□ -0.1
SNHG1-215ENST00000540904 ZFYVE16Q7Z3T8 1539 aa14.44□□□□□ -0.1
SNHG1-215ENST00000540904 ARHGEF40Q8TER5 1519 aa14.43□□□□□ -0.1
SNHG1-215ENST00000540904 SYCP2Q9BX26 1530 aa14.42□□□□□ -0.1
SNHG1-215ENST00000540904 PLEKHH2Q8IVE3 1493 aa14.42□□□□□ -0.1
SNHG1-215ENST00000540904 KIAA1107Q9UPP5 1409 aa14.41□□□□□ -0.1
SNHG1-215ENST00000540904 KDM5CP41229 1560 aa14.41□□□□□ -0.1
SNHG1-215ENST00000540904 ITSN2Q9NZM3 1697 aa14.41□□□□□ -0.1
SNHG1-215ENST00000540904 SPAG9O60271 1321 aaKnown RBP14.39□□□□□ -0.11
SNHG1-215ENST00000540904 ATP10AO60312 1499 aa14.38□□□□□ -0.11
SNHG1-215ENST00000540904 MLH3Q9UHC1 1453 aa14.38□□□□□ -0.11
SNHG1-215ENST00000540904 HECW2Q9P2P5 1572 aa14.38□□□□□ -0.11
SNHG1-215ENST00000540904 MYOM3Q5VTT5 1437 aa14.37□□□□□ -0.11
SNHG1-215ENST00000540904 CAMSAP2Q08AD1 1489 aa14.37□□□□□ -0.11
SNHG1-215ENST00000540904 C9orf84Q5VXU9 1444 aa14.36□□□□□ -0.11
SNHG1-215ENST00000540904 MBD5Q9P267 1494 aa14.36□□□□□ -0.11
SNHG1-215ENST00000540904 MLECQ14165 292 aa14.35□□□□□ -0.11
SNHG1-215ENST00000540904 MIA2Q96PC5 1412 aa14.33□□□□□ -0.11
SNHG1-215ENST00000540904 DIP2CQ9Y2E4 1556 aa14.33□□□□□ -0.12
SNHG1-215ENST00000540904 RSPH4AQ5TD94 716 aa14.32□□□□□ -0.12
SNHG1-215ENST00000540904 ABCA6Q8N139 1617 aa14.31□□□□□ -0.12
SNHG1-215ENST00000540904 PPARGC1BQ86YN6 1023 aaKnown RBP14.31□□□□□ -0.12
SNHG1-215ENST00000540904 SIGLEC1Q9BZZ2 1709 aa14.31□□□□□ -0.12
SNHG1-215ENST00000540904 KIDINS220Q9ULH0 1771 aa14.31□□□□□ -0.12
SNHG1-215ENST00000540904 CCDC141Q6ZP82 1450 aa14.31□□□□□ -0.12
SNHG1-215ENST00000540904 ATP7AQ04656 1500 aa14.31□□□□□ -0.12
SNHG1-215ENST00000540904 BCORL1Q5H9F3 1711 aa14.3□□□□□ -0.12
SNHG1-215ENST00000540904 TSPY4P0CV99 314 aa14.29□□□□□ -0.12
SNHG1-215ENST00000540904 TSPY10P0CW01 314 aa14.29□□□□□ -0.12
SNHG1-215ENST00000540904 FGD6Q6ZV73 1430 aa14.29□□□□□ -0.12
SNHG1-215ENST00000540904 ADAMTSL3P82987 1691 aa14.29□□□□□ -0.12
SNHG1-215ENST00000540904 RTEL1-TNFRSF6BF6WH68 1400 aa14.28□□□□□ -0.12
SNHG1-215ENST00000540904 INO80Q9ULG1 1556 aaPredicted RBP14.28□□□□□ -0.12
SNHG1-215ENST00000540904 REREQ9P2R6 1566 aa14.27□□□□□ -0.12
SNHG1-215ENST00000540904 MADDQ8WXG6 1647 aa14.26□□□□□ -0.13
SNHG1-215ENST00000540904 ARHGEF5Q12774 1597 aa14.26□□□□□ -0.13
SNHG1-215ENST00000540904 A2MP01023 1474 aa14.26□□□□□ -0.13
SNHG1-215ENST00000540904 PTPRMP28827 1452 aa14.26□□□□□ -0.13
SNHG1-215ENST00000540904 PTPN23Q9H3S7 1636 aa14.25□□□□□ -0.13
SNHG1-215ENST00000540904 AGLP35573 1532 aa14.25□□□□□ -0.13
SNHG1-215ENST00000540904 FAM50AQ14320 339 aaKnown RBP14.24□□□□□ -0.13
SNHG1-215ENST00000540904 TCOF1Q13428 1488 aaKnown RBP14.23□□□□□ -0.13
SNHG1-215ENST00000540904 ESF1Q9H501 851 aaKnown RBP14.22□□□□□ -0.13
SNHG1-215ENST00000540904 DHX29Q7Z478 1369 aaKnown RBP14.22□□□□□ -0.13
SNHG1-215ENST00000540904 RIMS1Q86UR5 1692 aaKnown RBP14.21□□□□□ -0.13
SNHG1-215ENST00000540904 GGT6Q6P531 493 aa14.21□□□□□ -0.13
SNHG1-215ENST00000540904 ABCC5O15440 1437 aa14.21□□□□□ -0.13
SNHG1-215ENST00000540904 PLXNC1O60486 1568 aa14.21□□□□□ -0.14
SNHG1-215ENST00000540904 DAPK1P53355 1430 aa14.2□□□□□ -0.14
SNHG1-215ENST00000540904 KIF3BO15066 747 aa14.19□□□□□ -0.14
SNHG1-215ENST00000540904 ADGBQ8N7X0 1667 aa14.19□□□□□ -0.14
SNHG1-215ENST00000540904 MAST1Q9Y2H9 1570 aa14.18□□□□□ -0.14
SNHG1-215ENST00000540904 CEBPAP49715 358 aaPredicted RBP14.18□□□□□ -0.14
SNHG1-215ENST00000540904 CHIC2Q9UKJ5 165 aa14.18□□□□□ -0.14
SNHG1-215ENST00000540904 FER1L4A9Z1Z3 1794 aa14.18□□□□□ -0.14
SNHG1-215ENST00000540904 RRP7BPQ9NSQ0 103 aa14.17□□□□□ -0.14
SNHG1-215ENST00000540904 SHANK2Q9UPX8 1470 aa14.17□□□□□ -0.14
SNHG1-215ENST00000540904 DNMT1P26358 1616 aaKnown RBP14.15□□□□□ -0.14
SNHG1-215ENST00000540904 KIF15Q9NS87 1388 aa14.15□□□□□ -0.14
SNHG1-215ENST00000540904 CNTLNQ9NXG0 1405 aa14.15□□□□□ -0.14
SNHG1-215ENST00000540904 ANKRD30AQ9BXX3 1397 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms