RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 ITSN2Q9NZM3 1697 aa20.38■□□□□ 0.85
CCDC42-202ENST00000539522 PHLDB1Q86UU1 1377 aa20.38■□□□□ 0.85
CCDC42-202ENST00000539522 FRMPD1Q5SYB0 1578 aa20.38■□□□□ 0.85
CCDC42-202ENST00000539522 ARHGAP5Q13017 1502 aa20.37■□□□□ 0.85
CCDC42-202ENST00000539522 PPARGC1BQ86YN6 1023 aaKnown RBP20.37■□□□□ 0.85
CCDC42-202ENST00000539522 CFAP74Q9C0B2 1584 aa20.37■□□□□ 0.85
CCDC42-202ENST00000539522 ARHGEF12Q9NZN5 1544 aa20.37■□□□□ 0.85
CCDC42-202ENST00000539522 AKNAQ7Z591 1439 aa20.36■□□□□ 0.85
CCDC42-202ENST00000539522 CCNB3Q8WWL7 1395 aa20.35■□□□□ 0.85
CCDC42-202ENST00000539522 KDM6BO15054 1643 aa20.35■□□□□ 0.85
CCDC42-202ENST00000539522 APLP2Q06481 763 aa20.35■□□□□ 0.85
CCDC42-202ENST00000539522 ABCC1P33527 1531 aa20.34■□□□□ 0.85
CCDC42-202ENST00000539522 RICTORQ6R327 1708 aa20.34■□□□□ 0.85
CCDC42-202ENST00000539522 MYOM3Q5VTT5 1437 aa20.32■□□□□ 0.84
CCDC42-202ENST00000539522 ZNF644Q9H582 1327 aaPredicted RBP20.31■□□□□ 0.84
CCDC42-202ENST00000539522 ADGRL1O94910 1474 aa20.3■□□□□ 0.84
CCDC42-202ENST00000539522 EFCAB2Q5VUJ9 269 aa20.29■□□□□ 0.84
CCDC42-202ENST00000539522 SYCP2Q9BX26 1530 aa20.27■□□□□ 0.84
CCDC42-202ENST00000539522 SCAPERQ9BY12 1400 aa20.27■□□□□ 0.83
CCDC42-202ENST00000539522 CAMSAP2Q08AD1 1489 aa20.26■□□□□ 0.83
CCDC42-202ENST00000539522 CFDP1Q9UEE9 299 aaPredicted RBP20.26■□□□□ 0.83
CCDC42-202ENST00000539522 MBD5Q9P267 1494 aa20.25■□□□□ 0.83
CCDC42-202ENST00000539522 POGZQ7Z3K3 1410 aa20.25■□□□□ 0.83
CCDC42-202ENST00000539522 TRAPPC8Q9Y2L5 1435 aa20.25■□□□□ 0.83
CCDC42-202ENST00000539522 PTPN23Q9H3S7 1636 aa20.24■□□□□ 0.83
CCDC42-202ENST00000539522 RAPGEF3O95398 923 aa20.24■□□□□ 0.83
CCDC42-202ENST00000539522 FGD6Q6ZV73 1430 aa20.24■□□□□ 0.83
CCDC42-202ENST00000539522 MIA2Q96PC5 1412 aa20.24■□□□□ 0.83
CCDC42-202ENST00000539522 KDM5CP41229 1560 aa20.23■□□□□ 0.83
CCDC42-202ENST00000539522 DENND4BO75064 1496 aaPredicted RBP20.23■□□□□ 0.83
CCDC42-202ENST00000539522 TCOF1Q13428 1488 aaKnown RBP20.23■□□□□ 0.83
CCDC42-202ENST00000539522 KIAA1107Q9UPP5 1409 aa20.22■□□□□ 0.83
CCDC42-202ENST00000539522 ZNF777Q9ULD5 760 aaPredicted RBP20.22■□□□□ 0.83
CCDC42-202ENST00000539522 ZMYM4Q5VZL5 1548 aa20.22■□□□□ 0.83
CCDC42-202ENST00000539522 HNRNPMP52272 730 aaKnown RBP eCLIP20.19■□□□□ 0.82
CCDC42-202ENST00000539522 AFAP1Q8N556 730 aa20.18■□□□□ 0.82
CCDC42-202ENST00000539522 ARHGEF5Q12774 1597 aa20.17■□□□□ 0.82
CCDC42-202ENST00000539522 PLEKHH2Q8IVE3 1493 aa20.17■□□□□ 0.82
CCDC42-202ENST00000539522 SIGLEC1Q9BZZ2 1709 aa20.16■□□□□ 0.82
CCDC42-202ENST00000539522 KIDINS220Q9ULH0 1771 aa20.16■□□□□ 0.82
CCDC42-202ENST00000539522 ZNF518AQ6AHZ1 1483 aa20.16■□□□□ 0.82
CCDC42-202ENST00000539522 INO80Q9ULG1 1556 aaPredicted RBP20.15■□□□□ 0.82
CCDC42-202ENST00000539522 CROCC2H7BZ55 1655 aa20.14■□□□□ 0.81
CCDC42-202ENST00000539522 HECW2Q9P2P5 1572 aa20.13■□□□□ 0.81
CCDC42-202ENST00000539522 YEATS2Q9ULM3 1422 aa20.13■□□□□ 0.81
CCDC42-202ENST00000539522 DNMT1P26358 1616 aaKnown RBP20.13■□□□□ 0.81
CCDC42-202ENST00000539522 ABCA6Q8N139 1617 aa20.13■□□□□ 0.81
CCDC42-202ENST00000539522 RRBP1Q9P2E9 1410 aaKnown RBP20.12■□□□□ 0.81
CCDC42-202ENST00000539522 ZFYVE16Q7Z3T8 1539 aa20.12■□□□□ 0.81
CCDC42-202ENST00000539522 ARHGEF40Q8TER5 1519 aa20.12■□□□□ 0.81
CCDC42-202ENST00000539522 CCDC141Q6ZP82 1450 aa20.11■□□□□ 0.81
CCDC42-202ENST00000539522 MLH3Q9UHC1 1453 aa20.11■□□□□ 0.81
CCDC42-202ENST00000539522 DIP2CQ9Y2E4 1556 aa20.1■□□□□ 0.81
CCDC42-202ENST00000539522 ABCC5O15440 1437 aa20.1■□□□□ 0.81
CCDC42-202ENST00000539522 MAST1Q9Y2H9 1570 aa20.08■□□□□ 0.81
CCDC42-202ENST00000539522 PTPRKQ15262 1439 aa20.08■□□□□ 0.8
CCDC42-202ENST00000539522 ATP7AQ04656 1500 aa20.07■□□□□ 0.8
CCDC42-202ENST00000539522 MAGI2Q86UL8 1455 aa20.07■□□□□ 0.8
CCDC42-202ENST00000539522 DAPK1P53355 1430 aa20.07■□□□□ 0.8
CCDC42-202ENST00000539522 ADGBQ8N7X0 1667 aa20.06■□□□□ 0.8
CCDC42-202ENST00000539522 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.04■□□□□ 0.8
CCDC42-202ENST00000539522 SHANK2Q9UPX8 1470 aa20.02■□□□□ 0.8
CCDC42-202ENST00000539522 RTEL1-TNFRSF6BF6WH68 1400 aa20.02■□□□□ 0.79
CCDC42-202ENST00000539522 C9orf84Q5VXU9 1444 aa20.01■□□□□ 0.79
CCDC42-202ENST00000539522 SPAG9O60271 1321 aaKnown RBP20.01■□□□□ 0.79
CCDC42-202ENST00000539522 REREQ9P2R6 1566 aa20■□□□□ 0.79
CCDC42-202ENST00000539522 FAM50AQ14320 339 aaKnown RBP20■□□□□ 0.79
CCDC42-202ENST00000539522 PLXNC1O60486 1568 aa20■□□□□ 0.79
CCDC42-202ENST00000539522 RSPH4AQ5TD94 716 aa19.99■□□□□ 0.79
CCDC42-202ENST00000539522 ATP10AO60312 1499 aa19.99■□□□□ 0.79
CCDC42-202ENST00000539522 ADGRL2O95490 1459 aa19.96■□□□□ 0.79
CCDC42-202ENST00000539522 NCOA1Q15788 1441 aa19.92■□□□□ 0.78
CCDC42-202ENST00000539522 A2MP01023 1474 aa19.92■□□□□ 0.78
CCDC42-202ENST00000539522 CHIC2Q9UKJ5 165 aa19.91■□□□□ 0.78
CCDC42-202ENST00000539522 AGLP35573 1532 aa19.91■□□□□ 0.78
CCDC42-202ENST00000539522 BCORL1Q5H9F3 1711 aa19.9■□□□□ 0.78
CCDC42-202ENST00000539522 TSPY4P0CV99 314 aa19.9■□□□□ 0.78
CCDC42-202ENST00000539522 TSPY10P0CW01 314 aa19.9■□□□□ 0.78
CCDC42-202ENST00000539522 DHX29Q7Z478 1369 aaKnown RBP19.87■□□□□ 0.77
CCDC42-202ENST00000539522 ADAMTSL3P82987 1691 aa19.87■□□□□ 0.77
CCDC42-202ENST00000539522 ITGAEP38570 1179 aa19.86■□□□□ 0.77
CCDC42-202ENST00000539522 MYT1LQ9UL68 1186 aa19.86■□□□□ 0.77
CCDC42-202ENST00000539522 DUOX2Q9NRD8 1548 aa19.86■□□□□ 0.77
CCDC42-202ENST00000539522 ROCK1Q13464 1354 aa19.85■□□□□ 0.77
CCDC42-202ENST00000539522 KIF15Q9NS87 1388 aa19.85■□□□□ 0.77
CCDC42-202ENST00000539522 MROH1Q8NDA8 1641 aa19.85■□□□□ 0.77
CCDC42-202ENST00000539522 RRP7BPQ9NSQ0 103 aa19.84■□□□□ 0.77
CCDC42-202ENST00000539522 EIF2AK4Q9P2K8 1649 aaKnown RBP19.84■□□□□ 0.77
CCDC42-202ENST00000539522 ANKRD30AQ9BXX3 1397 aa19.83■□□□□ 0.76
CCDC42-202ENST00000539522 GCC2Q8IWJ2 1684 aa19.82■□□□□ 0.76
CCDC42-202ENST00000539522 KDM4FA0A1W2PPD8 638 aa19.82■□□□□ 0.76
CCDC42-202ENST00000539522 RNF17Q9BXT8 1623 aaKnown RBP19.82■□□□□ 0.76
CCDC42-202ENST00000539522 DEPDC5O75140 1603 aa19.8■□□□□ 0.76
CCDC42-202ENST00000539522 MADDQ8WXG6 1647 aa19.8■□□□□ 0.76
CCDC42-202ENST00000539522 NAIPQ13075 1403 aa19.79■□□□□ 0.76
CCDC42-202ENST00000539522 ERBINQ96RT1 1412 aa19.79■□□□□ 0.76
CCDC42-202ENST00000539522 FER1L4A9Z1Z3 1794 aa19.77■□□□□ 0.76
CCDC42-202ENST00000539522 HFM1A2PYH4 1435 aa19.76■□□□□ 0.75
CCDC42-202ENST00000539522 ANKRD50Q9ULJ7 1429 aa19.75■□□□□ 0.75
CCDC42-202ENST00000539522 ARID4BQ4LE39 1312 aaPredicted RBP19.75■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms