RNA–Protein interactions for RNA: ENST00000539492.1

CD4-209, Transcript of CD4 molecule, humanhuman

TSL 4

Gene CD4, Length 579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD4-209ENST00000539492 KIF14Q15058 1648 aa13.49□□□□□ -0.25
CD4-209ENST00000539492 SCAPERQ9BY12 1400 aa13.48□□□□□ -0.25
CD4-209ENST00000539492 UBTFP17480 764 aaKnown RBP13.48□□□□□ -0.25
CD4-209ENST00000539492 FBXO41Q8TF61 875 aa13.48□□□□□ -0.25
CD4-209ENST00000539492 LRRIQ1Q96JM4 1722 aa13.47□□□□□ -0.25
CD4-209ENST00000539492 SETD1BQ9UPS6 1966 aaKnown RBP13.46□□□□□ -0.25
CD4-209ENST00000539492 CDK11AQ9UQ88 783 aaPredicted RBP13.46□□□□□ -0.25
CD4-209ENST00000539492 TROQ12816 1431 aaPredicted RBP13.45□□□□□ -0.26
CD4-209ENST00000539492 C9orf84Q5VXU9 1444 aa13.45□□□□□ -0.26
CD4-209ENST00000539492 ATP10AO60312 1499 aa13.44□□□□□ -0.26
CD4-209ENST00000539492 EFCAB2Q5VUJ9 269 aa13.44□□□□□ -0.26
CD4-209ENST00000539492 ATP1B4Q9UN42 357 aaPredicted RBP13.44□□□□□ -0.26
CD4-209ENST00000539492 ARHGEF12Q9NZN5 1544 aa13.44□□□□□ -0.26
CD4-209ENST00000539492 ZNF518AQ6AHZ1 1483 aa13.43□□□□□ -0.26
CD4-209ENST00000539492 CLIP1P30622 1438 aa13.43□□□□□ -0.26
CD4-209ENST00000539492 KDM5CP41229 1560 aa13.43□□□□□ -0.26
CD4-209ENST00000539492 EHMT2Q96KQ7 1210 aa13.43□□□□□ -0.26
CD4-209ENST00000539492 CDC42BPBQ9Y5S2 1711 aa13.43□□□□□ -0.26
CD4-209ENST00000539492 ARHGAP5Q13017 1502 aa13.43□□□□□ -0.26
CD4-209ENST00000539492 PREX1Q8TCU6 1659 aa13.42□□□□□ -0.26
CD4-209ENST00000539492 MLECQ14165 292 aa13.41□□□□□ -0.26
CD4-209ENST00000539492 PLPPR3Q6T4P5 718 aa13.41□□□□□ -0.26
CD4-209ENST00000539492 CHIC1Q5VXU3 224 aa13.4□□□□□ -0.26
CD4-209ENST00000539492 PREX2Q70Z35 1606 aa13.39□□□□□ -0.27
CD4-209ENST00000539492 HSPA2P54652 639 aa13.39□□□□□ -0.27
CD4-209ENST00000539492 REREQ9P2R6 1566 aa13.38□□□□□ -0.27
CD4-209ENST00000539492 DIP2CQ9Y2E4 1556 aa13.38□□□□□ -0.27
CD4-209ENST00000539492 CCDC18Q5T9S5 1454 aa13.38□□□□□ -0.27
CD4-209ENST00000539492 ITSN2Q9NZM3 1697 aa13.37□□□□□ -0.27
CD4-209ENST00000539492 ABCA6Q8N139 1617 aa13.37□□□□□ -0.27
CD4-209ENST00000539492 ABCC1P33527 1531 aa13.37□□□□□ -0.27
CD4-209ENST00000539492 CDC42BPAQ5VT25 1732 aa13.36□□□□□ -0.27
CD4-209ENST00000539492 CASKIN1Q8WXD9 1431 aa13.36□□□□□ -0.27
CD4-209ENST00000539492 MLH3Q9UHC1 1453 aa13.35□□□□□ -0.27
CD4-209ENST00000539492 AFAP1Q8N556 730 aa13.34□□□□□ -0.27
CD4-209ENST00000539492 AGLP35573 1532 aa13.33□□□□□ -0.28
CD4-209ENST00000539492 STRCQ7RTU9 1775 aa13.32□□□□□ -0.28
CD4-209ENST00000539492 KIDINS220Q9ULH0 1771 aa13.32□□□□□ -0.28
CD4-209ENST00000539492 C3P01024 1663 aa13.32□□□□□ -0.28
CD4-209ENST00000539492 FYCO1Q9BQS8 1478 aa13.32□□□□□ -0.28
CD4-209ENST00000539492 MYT1LQ9UL68 1186 aa13.32□□□□□ -0.28
CD4-209ENST00000539492 TRAPPC8Q9Y2L5 1435 aa13.31□□□□□ -0.28
CD4-209ENST00000539492 UHRF1BP1Q6BDS2 1440 aa13.3□□□□□ -0.28
CD4-209ENST00000539492 CEBPAP49715 358 aaPredicted RBP13.3□□□□□ -0.28
CD4-209ENST00000539492 CERKQ8TCT0 537 aa13.28□□□□□ -0.28
CD4-209ENST00000539492 SAMD9LQ8IVG5 1584 aa13.27□□□□□ -0.29
CD4-209ENST00000539492 MROH2AA6NES4 1674 aa13.26□□□□□ -0.29
CD4-209ENST00000539492 SYCP2Q9BX26 1530 aa13.26□□□□□ -0.29
CD4-209ENST00000539492 CNTLNQ9NXG0 1405 aa13.26□□□□□ -0.29
CD4-209ENST00000539492 ESF1Q9H501 851 aaKnown RBP13.25□□□□□ -0.29
CD4-209ENST00000539492 DMRT2Q9Y5R5 561 aa13.25□□□□□ -0.29
CD4-209ENST00000539492 SUPT6HQ7KZ85 1726 aaKnown RBP13.24□□□□□ -0.29
CD4-209ENST00000539492 GPATCH8Q9UKJ3 1502 aaKnown RBP13.23□□□□□ -0.29
CD4-209ENST00000539492 INO80Q9ULG1 1556 aaPredicted RBP13.22□□□□□ -0.29
CD4-209ENST00000539492 PLEKHH2Q8IVE3 1493 aa13.22□□□□□ -0.29
CD4-209ENST00000539492 PTPRTO14522 1441 aa13.22□□□□□ -0.29
CD4-209ENST00000539492 ZNF777Q9ULD5 760 aaPredicted RBP13.21□□□□□ -0.29
CD4-209ENST00000539492 ATP7AQ04656 1500 aa13.21□□□□□ -0.29
CD4-209ENST00000539492 KIAA1107Q9UPP5 1409 aa13.21□□□□□ -0.3
CD4-209ENST00000539492 PLXNC1O60486 1568 aa13.2□□□□□ -0.3
CD4-209ENST00000539492 SPAG9O60271 1321 aaKnown RBP13.2□□□□□ -0.3
CD4-209ENST00000539492 NPATQ14207 1427 aa13.2□□□□□ -0.3
CD4-209ENST00000539492 CLTCQ00610 1675 aaKnown RBP13.19□□□□□ -0.3
CD4-209ENST00000539492 ADGBQ8N7X0 1667 aa13.19□□□□□ -0.3
CD4-209ENST00000539492 CCNB3Q8WWL7 1395 aa13.19□□□□□ -0.3
CD4-209ENST00000539492 NCOA1Q15788 1441 aa13.18□□□□□ -0.3
CD4-209ENST00000539492 ZNF142P52746 1687 aaPredicted RBP13.18□□□□□ -0.3
CD4-209ENST00000539492 HNRNPMP52272 730 aaKnown RBP eCLIP13.17□□□□□ -0.3
CD4-209ENST00000539492 CFDP1Q9UEE9 299 aaPredicted RBP13.17□□□□□ -0.3
CD4-209ENST00000539492 MTUS2Q5JR59 1369 aa13.17□□□□□ -0.3
CD4-209ENST00000539492 A2MP01023 1474 aa13.16□□□□□ -0.3
CD4-209ENST00000539492 EHBP1L1Q8N3D4 1523 aa13.16□□□□□ -0.3
CD4-209ENST00000539492 CAMSAP1Q5T5Y3 1602 aa13.16□□□□□ -0.3
CD4-209ENST00000539492 TIAM1Q13009 1591 aa13.15□□□□□ -0.3
CD4-209ENST00000539492 LTBP4Q8N2S1 1624 aa13.15□□□□□ -0.3
CD4-209ENST00000539492 MYO3AQ8NEV4 1616 aa13.15□□□□□ -0.3
CD4-209ENST00000539492 ZMYM3Q14202 1370 aa13.15□□□□□ -0.3
CD4-209ENST00000539492 IQSEC2Q5JU85 1478 aa13.14□□□□□ -0.31
CD4-209ENST00000539492 CEP170BQ9Y4F5 1589 aaPredicted RBP13.11□□□□□ -0.31
CD4-209ENST00000539492 PTPRKQ15262 1439 aa13.11□□□□□ -0.31
CD4-209ENST00000539492 CEP162Q5TB80 1403 aa13.11□□□□□ -0.31
CD4-209ENST00000539492 PLA2R1Q13018 1463 aa13.1□□□□□ -0.31
CD4-209ENST00000539492 MBD5Q9P267 1494 aa13.1□□□□□ -0.31
CD4-209ENST00000539492 PPP6R1Q9UPN7 881 aa13.1□□□□□ -0.31
CD4-209ENST00000539492 RTEL1-TNFRSF6BF6WH68 1400 aa13.1□□□□□ -0.31
CD4-209ENST00000539492 GGT6Q6P531 493 aa13.08□□□□□ -0.32
CD4-209ENST00000539492 PKD2Q13563 968 aa13.07□□□□□ -0.32
CD4-209ENST00000539492 TCOF1Q13428 1488 aaKnown RBP13.07□□□□□ -0.32
CD4-209ENST00000539492 FAM135AQ9P2D6 1515 aa13.07□□□□□ -0.32
CD4-209ENST00000539492 ZNF644Q9H582 1327 aaPredicted RBP13.07□□□□□ -0.32
CD4-209ENST00000539492 CCDC141Q6ZP82 1450 aa13.06□□□□□ -0.32
CD4-209ENST00000539492 POLR1AO95602 1720 aaPredicted RBP13.06□□□□□ -0.32
CD4-209ENST00000539492 NCKAP5LQ9HCH0 1330 aa13.06□□□□□ -0.32
CD4-209ENST00000539492 SPATA31D1Q6ZQQ2 1576 aa13.06□□□□□ -0.32
CD4-209ENST00000539492 DISP3Q9P2K9 1392 aa13.06□□□□□ -0.32
CD4-209ENST00000539492 DNMT1P26358 1616 aaKnown RBP13.05□□□□□ -0.32
CD4-209ENST00000539492 DHX29Q7Z478 1369 aaKnown RBP13.05□□□□□ -0.32
CD4-209ENST00000539492 A2ML1A8K2U0 1454 aa13.04□□□□□ -0.32
CD4-209ENST00000539492 CAMSAP2Q08AD1 1489 aa13.04□□□□□ -0.32
CD4-209ENST00000539492 NCOA2Q15596 1464 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms