RNA–Protein interactions for RNA: ENST00000538970.5

VAMP1-206, Transcript of vesicle associated membrane protein 1, humanhuman

TSL 1 (best)

Gene VAMP1, Length 567 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP1-206ENST00000538970 PLPPR3Q6T4P5 718 aa20.64■□□□□ 0.89
VAMP1-206ENST00000538970 DISP3Q9P2K9 1392 aa20.63■□□□□ 0.89
VAMP1-206ENST00000538970 SOCS7O14512 581 aa20.63■□□□□ 0.89
VAMP1-206ENST00000538970 ATP1B4Q9UN42 357 aaPredicted RBP20.62■□□□□ 0.89
VAMP1-206ENST00000538970 ZFYVE16Q7Z3T8 1539 aa20.6■□□□□ 0.89
VAMP1-206ENST00000538970 POGZQ7Z3K3 1410 aa20.6■□□□□ 0.89
VAMP1-206ENST00000538970 KIF14Q15058 1648 aa20.6■□□□□ 0.89
VAMP1-206ENST00000538970 MYO5CQ9NQX4 1742 aa20.58■□□□□ 0.89
VAMP1-206ENST00000538970 MAGI2Q86UL8 1455 aa20.58■□□□□ 0.89
VAMP1-206ENST00000538970 CDK11AQ9UQ88 783 aaPredicted RBP20.58■□□□□ 0.89
VAMP1-206ENST00000538970 TROQ12816 1431 aaPredicted RBP20.58■□□□□ 0.88
VAMP1-206ENST00000538970 YEATS2Q9ULM3 1422 aa20.58■□□□□ 0.88
VAMP1-206ENST00000538970 LRRIQ1Q96JM4 1722 aa20.58■□□□□ 0.88
VAMP1-206ENST00000538970 SCAPERQ9BY12 1400 aa20.57■□□□□ 0.88
VAMP1-206ENST00000538970 SIGLEC1Q9BZZ2 1709 aa20.56■□□□□ 0.88
VAMP1-206ENST00000538970 CLIP1P30622 1438 aa20.54■□□□□ 0.88
VAMP1-206ENST00000538970 CASKIN1Q8WXD9 1431 aa20.53■□□□□ 0.88
VAMP1-206ENST00000538970 EFCAB2Q5VUJ9 269 aa20.51■□□□□ 0.87
VAMP1-206ENST00000538970 CCDC18Q5T9S5 1454 aa20.5■□□□□ 0.87
VAMP1-206ENST00000538970 ARHGAP5Q13017 1502 aa20.5■□□□□ 0.87
VAMP1-206ENST00000538970 ZNF518AQ6AHZ1 1483 aa20.47■□□□□ 0.87
VAMP1-206ENST00000538970 KDM5CP41229 1560 aa20.46■□□□□ 0.87
VAMP1-206ENST00000538970 C9orf84Q5VXU9 1444 aa20.45■□□□□ 0.86
VAMP1-206ENST00000538970 ATP10AO60312 1499 aa20.45■□□□□ 0.86
VAMP1-206ENST00000538970 FYCO1Q9BQS8 1478 aa20.45■□□□□ 0.86
VAMP1-206ENST00000538970 MLECQ14165 292 aa20.45■□□□□ 0.86
VAMP1-206ENST00000538970 SPATA31D1Q6ZQQ2 1576 aa20.45■□□□□ 0.86
VAMP1-206ENST00000538970 PREX2Q70Z35 1606 aa20.45■□□□□ 0.86
VAMP1-206ENST00000538970 CDC42BPBQ9Y5S2 1711 aa20.44■□□□□ 0.86
VAMP1-206ENST00000538970 FER1L4A9Z1Z3 1794 aa20.43■□□□□ 0.86
VAMP1-206ENST00000538970 ARHGEF12Q9NZN5 1544 aa20.42■□□□□ 0.86
VAMP1-206ENST00000538970 ABCC1P33527 1531 aa20.41■□□□□ 0.86
VAMP1-206ENST00000538970 AFAP1Q8N556 730 aa20.39■□□□□ 0.85
VAMP1-206ENST00000538970 STRCQ7RTU9 1775 aa20.39■□□□□ 0.85
VAMP1-206ENST00000538970 DIP2CQ9Y2E4 1556 aa20.38■□□□□ 0.85
VAMP1-206ENST00000538970 PREX1Q8TCU6 1659 aa20.37■□□□□ 0.85
VAMP1-206ENST00000538970 ITSN2Q9NZM3 1697 aa20.36■□□□□ 0.85
VAMP1-206ENST00000538970 REREQ9P2R6 1566 aa20.36■□□□□ 0.85
VAMP1-206ENST00000538970 MLH3Q9UHC1 1453 aa20.36■□□□□ 0.85
VAMP1-206ENST00000538970 CDC42BPAQ5VT25 1732 aa20.36■□□□□ 0.85
VAMP1-206ENST00000538970 ABCA6Q8N139 1617 aa20.35■□□□□ 0.85
VAMP1-206ENST00000538970 CEBPAP49715 358 aaPredicted RBP20.35■□□□□ 0.85
VAMP1-206ENST00000538970 TRAPPC8Q9Y2L5 1435 aa20.35■□□□□ 0.85
VAMP1-206ENST00000538970 SAMD9LQ8IVG5 1584 aa20.29■□□□□ 0.84
VAMP1-206ENST00000538970 GPATCH8Q9UKJ3 1502 aaKnown RBP20.29■□□□□ 0.84
VAMP1-206ENST00000538970 MYT1LQ9UL68 1186 aa20.29■□□□□ 0.84
VAMP1-206ENST00000538970 AGLP35573 1532 aa20.28■□□□□ 0.84
VAMP1-206ENST00000538970 KIDINS220Q9ULH0 1771 aa20.27■□□□□ 0.84
VAMP1-206ENST00000538970 DMRT2Q9Y5R5 561 aa20.27■□□□□ 0.84
VAMP1-206ENST00000538970 SYCP2Q9BX26 1530 aa20.27■□□□□ 0.83
VAMP1-206ENST00000538970 UHRF1BP1Q6BDS2 1440 aa20.24■□□□□ 0.83
VAMP1-206ENST00000538970 LTBP4Q8N2S1 1624 aa20.24■□□□□ 0.83
VAMP1-206ENST00000538970 ZNF777Q9ULD5 760 aaPredicted RBP20.22■□□□□ 0.83
VAMP1-206ENST00000538970 MTUS2Q5JR59 1369 aa20.21■□□□□ 0.83
VAMP1-206ENST00000538970 CCNB3Q8WWL7 1395 aa20.21■□□□□ 0.83
VAMP1-206ENST00000538970 PTPRTO14522 1441 aa20.2■□□□□ 0.82
VAMP1-206ENST00000538970 CEP162Q5TB80 1403 aa20.2■□□□□ 0.82
VAMP1-206ENST00000538970 PLEKHH2Q8IVE3 1493 aa20.2■□□□□ 0.82
VAMP1-206ENST00000538970 KIAA1107Q9UPP5 1409 aa20.19■□□□□ 0.82
VAMP1-206ENST00000538970 EHBP1L1Q8N3D4 1523 aa20.19■□□□□ 0.82
VAMP1-206ENST00000538970 INO80Q9ULG1 1556 aaPredicted RBP20.18■□□□□ 0.82
VAMP1-206ENST00000538970 CFDP1Q9UEE9 299 aaPredicted RBP20.18■□□□□ 0.82
VAMP1-206ENST00000538970 C3P01024 1663 aa20.18■□□□□ 0.82
VAMP1-206ENST00000538970 ATP7AQ04656 1500 aa20.17■□□□□ 0.82
VAMP1-206ENST00000538970 TIAM1Q13009 1591 aa20.17■□□□□ 0.82
VAMP1-206ENST00000538970 HNRNPMP52272 730 aaKnown RBP eCLIP20.16■□□□□ 0.82
VAMP1-206ENST00000538970 SPAG9O60271 1321 aaKnown RBP20.16■□□□□ 0.82
VAMP1-206ENST00000538970 PLXNC1O60486 1568 aa20.14■□□□□ 0.81
VAMP1-206ENST00000538970 CNTLNQ9NXG0 1405 aa20.14■□□□□ 0.81
VAMP1-206ENST00000538970 IQSEC2Q5JU85 1478 aa20.12■□□□□ 0.81
VAMP1-206ENST00000538970 ESF1Q9H501 851 aaKnown RBP20.12■□□□□ 0.81
VAMP1-206ENST00000538970 A2MP01023 1474 aa20.1■□□□□ 0.81
VAMP1-206ENST00000538970 SUPT6HQ7KZ85 1726 aaKnown RBP20.1■□□□□ 0.81
VAMP1-206ENST00000538970 MROH2AA6NES4 1674 aa20.1■□□□□ 0.81
VAMP1-206ENST00000538970 MBD5Q9P267 1494 aa20.09■□□□□ 0.81
VAMP1-206ENST00000538970 NCOA1Q15788 1441 aa20.09■□□□□ 0.81
VAMP1-206ENST00000538970 SETD1BQ9UPS6 1966 aaKnown RBP20.08■□□□□ 0.81
VAMP1-206ENST00000538970 ZNF644Q9H582 1327 aaPredicted RBP20.08■□□□□ 0.81
VAMP1-206ENST00000538970 NCOA2Q15596 1464 aa20.05■□□□□ 0.8
VAMP1-206ENST00000538970 ADGBQ8N7X0 1667 aa20.05■□□□□ 0.8
VAMP1-206ENST00000538970 NPATQ14207 1427 aa20.04■□□□□ 0.8
VAMP1-206ENST00000538970 UBAP1LF5GYI3 381 aa20.03■□□□□ 0.8
VAMP1-206ENST00000538970 CLTCQ00610 1675 aaKnown RBP20.03■□□□□ 0.8
VAMP1-206ENST00000538970 ZNF335Q9H4Z2 1342 aaPredicted RBP20.02■□□□□ 0.8
VAMP1-206ENST00000538970 ZMYM3Q14202 1370 aa20.02■□□□□ 0.8
VAMP1-206ENST00000538970 RTEL1-TNFRSF6BF6WH68 1400 aa20.02■□□□□ 0.79
VAMP1-206ENST00000538970 CAMSAP2Q08AD1 1489 aa20.01■□□□□ 0.79
VAMP1-206ENST00000538970 CAMSAP1Q5T5Y3 1602 aa20.01■□□□□ 0.79
VAMP1-206ENST00000538970 VPS8Q8N3P4 1428 aa20.01■□□□□ 0.79
VAMP1-206ENST00000538970 CCDC141Q6ZP82 1450 aa19.99■□□□□ 0.79
VAMP1-206ENST00000538970 NCKAP5LQ9HCH0 1330 aa19.99■□□□□ 0.79
VAMP1-206ENST00000538970 GGT6Q6P531 493 aa19.97■□□□□ 0.79
VAMP1-206ENST00000538970 PTPRKQ15262 1439 aa19.96■□□□□ 0.79
VAMP1-206ENST00000538970 MYO3AQ8NEV4 1616 aa19.96■□□□□ 0.79
VAMP1-206ENST00000538970 LRRC9Q6ZRR7 1453 aa19.95■□□□□ 0.78
VAMP1-206ENST00000538970 MED1Q15648 1581 aaPredicted RBP19.95■□□□□ 0.78
VAMP1-206ENST00000538970 DHX29Q7Z478 1369 aaKnown RBP19.95■□□□□ 0.78
VAMP1-206ENST00000538970 ZNF142P52746 1687 aaPredicted RBP19.94■□□□□ 0.78
VAMP1-206ENST00000538970 LOC105371045A0A1W2PR82 267 aa19.94■□□□□ 0.78
VAMP1-206ENST00000538970 PPP6R1Q9UPN7 881 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms