RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 BRPF3Q9ULD4 1205 aa14.63□□□□□ -0.07
CLSTN3-207ENST00000537408 B4GALNT3Q6L9W6 998 aa14.62□□□□□ -0.07
CLSTN3-207ENST00000537408 ARHGEF11O15085 1522 aa14.6□□□□□ -0.07
CLSTN3-207ENST00000537408 RUSC2Q8N2Y8 1516 aa14.6□□□□□ -0.07
CLSTN3-207ENST00000537408 UACAQ9BZF9 1416 aa14.6□□□□□ -0.07
CLSTN3-207ENST00000537408 TARBP1Q13395 1621 aaKnown RBP14.6□□□□□ -0.07
CLSTN3-207ENST00000537408 FAM43AQ8N2R8 423 aa14.59□□□□□ -0.07
CLSTN3-207ENST00000537408 LAS1LQ9Y4W2 734 aaKnown RBP14.59□□□□□ -0.07
CLSTN3-207ENST00000537408 GSE1Q14687 1217 aa14.58□□□□□ -0.07
CLSTN3-207ENST00000537408 FHOD3Q2V2M9 1422 aa14.58□□□□□ -0.08
CLSTN3-207ENST00000537408 MLECQ14165 292 aa14.58□□□□□ -0.08
CLSTN3-207ENST00000537408 STAG3Q9UJ98 1225 aa14.57□□□□□ -0.08
CLSTN3-207ENST00000537408 IQGAP2Q13576 1575 aa14.57□□□□□ -0.08
CLSTN3-207ENST00000537408 NUP160Q12769 1436 aa14.56□□□□□ -0.08
CLSTN3-207ENST00000537408 ADAMTS12P58397 1594 aa14.56□□□□□ -0.08
CLSTN3-207ENST00000537408 CCNB3Q8WWL7 1395 aa14.56□□□□□ -0.08
CLSTN3-207ENST00000537408 NPM2Q86SE8 214 aaKnown RBP14.53□□□□□ -0.08
CLSTN3-207ENST00000537408 PPP1R15AO75807 674 aaPredicted RBP14.52□□□□□ -0.08
CLSTN3-207ENST00000537408 PLB1Q6P1J6 1458 aa14.52□□□□□ -0.09
CLSTN3-207ENST00000537408 HSP90AA2PQ14568 343 aaPredicted RBP14.52□□□□□ -0.09
CLSTN3-207ENST00000537408 PBRM1Q86U86 1689 aa14.5□□□□□ -0.09
CLSTN3-207ENST00000537408 ABCA5Q8WWZ7 1642 aa14.48□□□□□ -0.09
CLSTN3-207ENST00000537408 PRXQ9BXM0 1461 aa14.48□□□□□ -0.09
CLSTN3-207ENST00000537408 HSP90AA1P07900 732 aaKnown RBP14.47□□□□□ -0.09
CLSTN3-207ENST00000537408 RRP9O43818 475 aaKnown RBP14.47□□□□□ -0.09
CLSTN3-207ENST00000537408 CHD1O14646 1710 aa14.47□□□□□ -0.09
CLSTN3-207ENST00000537408 DDRGK1Q96HY6 314 aa14.46□□□□□ -0.09
CLSTN3-207ENST00000537408 CCDC18Q5T9S5 1454 aa14.44□□□□□ -0.1
CLSTN3-207ENST00000537408 CEP170Q5SW79 1584 aa14.44□□□□□ -0.1
CLSTN3-207ENST00000537408 VPS8Q8N3P4 1428 aa14.44□□□□□ -0.1
CLSTN3-207ENST00000537408 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.44□□□□□ -0.1
CLSTN3-207ENST00000537408 NAP1L5Q96NT1 182 aaPredicted RBP14.43□□□□□ -0.1
CLSTN3-207ENST00000537408 CD109Q6YHK3 1445 aa14.43□□□□□ -0.1
CLSTN3-207ENST00000537408 TEX14Q8IWB6 1497 aa14.42□□□□□ -0.1
CLSTN3-207ENST00000537408 A0A0U1RQG5 324 aaPredicted RBP14.41□□□□□ -0.1
CLSTN3-207ENST00000537408 RSPH4AQ5TD94 716 aa14.41□□□□□ -0.1
CLSTN3-207ENST00000537408 SPAG9O60271 1321 aaKnown RBP14.41□□□□□ -0.1
CLSTN3-207ENST00000537408 FRAT1Q92837 279 aaPredicted RBP14.4□□□□□ -0.1
CLSTN3-207ENST00000537408 ARAP1Q96P48 1450 aa14.39□□□□□ -0.11
CLSTN3-207ENST00000537408 CHGAP10645 457 aaKnown RBP14.39□□□□□ -0.11
CLSTN3-207ENST00000537408 GGT6Q6P531 493 aa14.38□□□□□ -0.11
CLSTN3-207ENST00000537408 EFCAB5A4FU69 1503 aa14.38□□□□□ -0.11
CLSTN3-207ENST00000537408 ASXL2Q76L83 1435 aa14.38□□□□□ -0.11
CLSTN3-207ENST00000537408 CHIC2Q9UKJ5 165 aa14.37□□□□□ -0.11
CLSTN3-207ENST00000537408 POGZQ7Z3K3 1410 aa14.36□□□□□ -0.11
CLSTN3-207ENST00000537408 RIMBP3CA6NJZ7 1639 aa14.35□□□□□ -0.11
CLSTN3-207ENST00000537408 RIMBP3BA6NNM3 1639 aa14.35□□□□□ -0.11
CLSTN3-207ENST00000537408 RIMBP3Q9UFD9 1639 aa14.35□□□□□ -0.11
CLSTN3-207ENST00000537408 TCERG1O14776 1098 aaKnown RBP14.35□□□□□ -0.11
CLSTN3-207ENST00000537408 PNNQ9H307 717 aaKnown RBP14.35□□□□□ -0.11
CLSTN3-207ENST00000537408 PDE4CQ08493 712 aa14.34□□□□□ -0.11
CLSTN3-207ENST00000537408 NFKBIBQ15653 356 aa14.34□□□□□ -0.11
CLSTN3-207ENST00000537408 ABCC2Q92887 1545 aa14.33□□□□□ -0.11
CLSTN3-207ENST00000537408 POLR3GLQ9BT43 218 aa14.33□□□□□ -0.12
CLSTN3-207ENST00000537408 RBM10P98175 930 aaKnown RBP14.33□□□□□ -0.12
CLSTN3-207ENST00000537408 KIF21BO75037 1637 aa14.32□□□□□ -0.12
CLSTN3-207ENST00000537408 HIRIP3Q9BW71 556 aaPredicted RBP14.32□□□□□ -0.12
CLSTN3-207ENST00000537408 KANK1Q14678 1352 aa14.31□□□□□ -0.12
CLSTN3-207ENST00000537408 PHLDB1Q86UU1 1377 aa14.31□□□□□ -0.12
CLSTN3-207ENST00000537408 UGGT2Q9NYU1 1516 aa14.3□□□□□ -0.12
CLSTN3-207ENST00000537408 L1TD1Q5T7N2 865 aaKnown RBP14.3□□□□□ -0.12
CLSTN3-207ENST00000537408 HNRNPMP52272 730 aaKnown RBP eCLIP14.3□□□□□ -0.12
CLSTN3-207ENST00000537408 ZBED9Q6R2W3 1325 aa14.3□□□□□ -0.12
CLSTN3-207ENST00000537408 RAPGEF3O95398 923 aa14.29□□□□□ -0.12
CLSTN3-207ENST00000537408 FGD1P98174 961 aa14.28□□□□□ -0.12
CLSTN3-207ENST00000537408 WDR7Q9Y4E6 1490 aa14.27□□□□□ -0.12
CLSTN3-207ENST00000537408 PDE4AP27815 886 aa14.27□□□□□ -0.12
CLSTN3-207ENST00000537408 KIF3BO15066 747 aa14.27□□□□□ -0.13
CLSTN3-207ENST00000537408 HDGFP51858 240 aaKnown RBP14.27□□□□□ -0.13
CLSTN3-207ENST00000537408 AAMPQ13685 434 aa14.26□□□□□ -0.13
CLSTN3-207ENST00000537408 CNGB1Q14028 1251 aaPredicted RBP14.26□□□□□ -0.13
CLSTN3-207ENST00000537408 FAM9BQ8IZU0 186 aa14.26□□□□□ -0.13
CLSTN3-207ENST00000537408 CLASP1Q7Z460 1538 aa14.26□□□□□ -0.13
CLSTN3-207ENST00000537408 MS4A1P11836 297 aa14.25□□□□□ -0.13
CLSTN3-207ENST00000537408 TROQ12816 1431 aaPredicted RBP14.24□□□□□ -0.13
CLSTN3-207ENST00000537408 ARHGAP5Q13017 1502 aa14.24□□□□□ -0.13
CLSTN3-207ENST00000537408 ZNF326Q5BKZ1 582 aaKnown RBP14.24□□□□□ -0.13
CLSTN3-207ENST00000537408 SIN3AQ96ST3 1273 aa14.24□□□□□ -0.13
CLSTN3-207ENST00000537408 CASKIN1Q8WXD9 1431 aa14.24□□□□□ -0.13
CLSTN3-207ENST00000537408 SCAPERQ9BY12 1400 aa14.23□□□□□ -0.13
CLSTN3-207ENST00000537408 KANK4Q5T7N3 995 aaPredicted RBP14.23□□□□□ -0.13
CLSTN3-207ENST00000537408 KIAA0556O60303 1618 aa14.22□□□□□ -0.13
CLSTN3-207ENST00000537408 HECW1Q76N89 1606 aa14.22□□□□□ -0.13
CLSTN3-207ENST00000537408 RAB3GAP2Q9H2M9 1393 aa14.22□□□□□ -0.13
CLSTN3-207ENST00000537408 MRS2Q9HD23 443 aa14.21□□□□□ -0.13
CLSTN3-207ENST00000537408 RRP7BPQ9NSQ0 103 aa14.21□□□□□ -0.13
CLSTN3-207ENST00000537408 DENND4BO75064 1496 aaPredicted RBP14.21□□□□□ -0.14
CLSTN3-207ENST00000537408 ARHGAP35Q9NRY4 1499 aa14.21□□□□□ -0.14
CLSTN3-207ENST00000537408 C14orf37Q86TY3 774 aa14.21□□□□□ -0.14
CLSTN3-207ENST00000537408 AFAP1Q8N556 730 aa14.2□□□□□ -0.14
CLSTN3-207ENST00000537408 RRBP1Q9P2E9 1410 aaKnown RBP14.2□□□□□ -0.14
CLSTN3-207ENST00000537408 BACH2Q9BYV9 841 aa14.2□□□□□ -0.14
CLSTN3-207ENST00000537408 PLEKHH2Q8IVE3 1493 aa14.19□□□□□ -0.14
CLSTN3-207ENST00000537408 RRAGDQ9NQL2 400 aaPredicted RBP14.18□□□□□ -0.14
CLSTN3-207ENST00000537408 AKNAQ7Z591 1439 aa14.18□□□□□ -0.14
CLSTN3-207ENST00000537408 TONSLQ96HA7 1378 aa14.18□□□□□ -0.14
CLSTN3-207ENST00000537408 PDIA4P13667 645 aaKnown RBP14.18□□□□□ -0.14
CLSTN3-207ENST00000537408 CALD1Q05682 793 aaKnown RBP14.18□□□□□ -0.14
CLSTN3-207ENST00000537408 NUDCQ9Y266 331 aa14.17□□□□□ -0.14
CLSTN3-207ENST00000537408 UHRF1BP1LA0JNW5 1464 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms