RNA–Protein interactions for RNA: ENST00000536483.1

PRKDC-207, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 834 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-207ENST00000536483 HECW1Q76N89 1606 aa20.35■□□□□ 0.85
PRKDC-207ENST00000536483 PCF11O94913 1555 aaKnown RBP20.34■□□□□ 0.85
PRKDC-207ENST00000536483 MLECQ14165 292 aa20.34■□□□□ 0.85
PRKDC-207ENST00000536483 CDK11AQ9UQ88 783 aaPredicted RBP20.34■□□□□ 0.85
PRKDC-207ENST00000536483 LMTK3Q96Q04 1460 aa20.34■□□□□ 0.85
PRKDC-207ENST00000536483 EFCAB2Q5VUJ9 269 aa20.33■□□□□ 0.85
PRKDC-207ENST00000536483 SIGLEC1Q9BZZ2 1709 aa20.32■□□□□ 0.84
PRKDC-207ENST00000536483 FBXO41Q8TF61 875 aa20.3■□□□□ 0.84
PRKDC-207ENST00000536483 HSPA2P54652 639 aa20.28■□□□□ 0.84
PRKDC-207ENST00000536483 TROQ12816 1431 aaPredicted RBP20.27■□□□□ 0.84
PRKDC-207ENST00000536483 KIF14Q15058 1648 aa20.27■□□□□ 0.84
PRKDC-207ENST00000536483 MYO5CQ9NQX4 1742 aa20.27■□□□□ 0.83
PRKDC-207ENST00000536483 ATP10AO60312 1499 aa20.25■□□□□ 0.83
PRKDC-207ENST00000536483 AFAP1Q8N556 730 aa20.24■□□□□ 0.83
PRKDC-207ENST00000536483 CLIP1P30622 1438 aa20.24■□□□□ 0.83
PRKDC-207ENST00000536483 C9orf84Q5VXU9 1444 aa20.23■□□□□ 0.83
PRKDC-207ENST00000536483 ARHGAP5Q13017 1502 aa20.22■□□□□ 0.83
PRKDC-207ENST00000536483 LRRIQ1Q96JM4 1722 aa20.21■□□□□ 0.83
PRKDC-207ENST00000536483 FER1L4A9Z1Z3 1794 aa20.21■□□□□ 0.83
PRKDC-207ENST00000536483 ZNF518AQ6AHZ1 1483 aa20.2■□□□□ 0.82
PRKDC-207ENST00000536483 MYT1LQ9UL68 1186 aa20.2■□□□□ 0.82
PRKDC-207ENST00000536483 ARHGEF12Q9NZN5 1544 aa20.19■□□□□ 0.82
PRKDC-207ENST00000536483 CEBPAP49715 358 aaPredicted RBP20.17■□□□□ 0.82
PRKDC-207ENST00000536483 CASKIN1Q8WXD9 1431 aa20.16■□□□□ 0.82
PRKDC-207ENST00000536483 KDM5CP41229 1560 aa20.16■□□□□ 0.82
PRKDC-207ENST00000536483 CDC42BPBQ9Y5S2 1711 aa20.13■□□□□ 0.81
PRKDC-207ENST00000536483 CCDC18Q5T9S5 1454 aa20.13■□□□□ 0.81
PRKDC-207ENST00000536483 TRAPPC8Q9Y2L5 1435 aa20.11■□□□□ 0.81
PRKDC-207ENST00000536483 DIP2CQ9Y2E4 1556 aa20.11■□□□□ 0.81
PRKDC-207ENST00000536483 MLH3Q9UHC1 1453 aa20.1■□□□□ 0.81
PRKDC-207ENST00000536483 PREX2Q70Z35 1606 aa20.09■□□□□ 0.81
PRKDC-207ENST00000536483 ABCC1P33527 1531 aa20.07■□□□□ 0.8
PRKDC-207ENST00000536483 ABCA6Q8N139 1617 aa20.07■□□□□ 0.8
PRKDC-207ENST00000536483 FYCO1Q9BQS8 1478 aa20.06■□□□□ 0.8
PRKDC-207ENST00000536483 CERKQ8TCT0 537 aa20.06■□□□□ 0.8
PRKDC-207ENST00000536483 REREQ9P2R6 1566 aa20.06■□□□□ 0.8
PRKDC-207ENST00000536483 PREX1Q8TCU6 1659 aa20.06■□□□□ 0.8
PRKDC-207ENST00000536483 ZNF777Q9ULD5 760 aaPredicted RBP20.05■□□□□ 0.8
PRKDC-207ENST00000536483 ITSN2Q9NZM3 1697 aa20.03■□□□□ 0.8
PRKDC-207ENST00000536483 ESF1Q9H501 851 aaKnown RBP20.03■□□□□ 0.8
PRKDC-207ENST00000536483 UHRF1BP1Q6BDS2 1440 aa20.02■□□□□ 0.8
PRKDC-207ENST00000536483 CDC42BPAQ5VT25 1732 aa20.02■□□□□ 0.8
PRKDC-207ENST00000536483 AGLP35573 1532 aa20.02■□□□□ 0.79
PRKDC-207ENST00000536483 CEP162Q5TB80 1403 aa20.01■□□□□ 0.79
PRKDC-207ENST00000536483 KIDINS220Q9ULH0 1771 aa20■□□□□ 0.79
PRKDC-207ENST00000536483 SETD1BQ9UPS6 1966 aaKnown RBP19.99■□□□□ 0.79
PRKDC-207ENST00000536483 GPATCH8Q9UKJ3 1502 aaKnown RBP19.99■□□□□ 0.79
PRKDC-207ENST00000536483 HNRNPMP52272 730 aaKnown RBP eCLIP19.98■□□□□ 0.79
PRKDC-207ENST00000536483 DMRT2Q9Y5R5 561 aa19.98■□□□□ 0.79
PRKDC-207ENST00000536483 C3P01024 1663 aa19.97■□□□□ 0.79
PRKDC-207ENST00000536483 SAMD9LQ8IVG5 1584 aa19.96■□□□□ 0.79
PRKDC-207ENST00000536483 SPAG9O60271 1321 aaKnown RBP19.96■□□□□ 0.79
PRKDC-207ENST00000536483 STRCQ7RTU9 1775 aa19.95■□□□□ 0.78
PRKDC-207ENST00000536483 SYCP2Q9BX26 1530 aa19.95■□□□□ 0.78
PRKDC-207ENST00000536483 LOC105371045A0A1W2PR82 267 aa19.94■□□□□ 0.78
PRKDC-207ENST00000536483 CFDP1Q9UEE9 299 aaPredicted RBP19.94■□□□□ 0.78
PRKDC-207ENST00000536483 CNTLNQ9NXG0 1405 aa19.93■□□□□ 0.78
PRKDC-207ENST00000536483 CCNB3Q8WWL7 1395 aa19.92■□□□□ 0.78
PRKDC-207ENST00000536483 MTUS2Q5JR59 1369 aa19.9■□□□□ 0.78
PRKDC-207ENST00000536483 KIAA1107Q9UPP5 1409 aa19.9■□□□□ 0.78
PRKDC-207ENST00000536483 PLEKHH2Q8IVE3 1493 aa19.88■□□□□ 0.77
PRKDC-207ENST00000536483 ZMYM3Q14202 1370 aa19.88■□□□□ 0.77
PRKDC-207ENST00000536483 ATP7AQ04656 1500 aa19.87■□□□□ 0.77
PRKDC-207ENST00000536483 PTPRTO14522 1441 aa19.87■□□□□ 0.77
PRKDC-207ENST00000536483 SUPT6HQ7KZ85 1726 aaKnown RBP19.86■□□□□ 0.77
PRKDC-207ENST00000536483 ZNF644Q9H582 1327 aaPredicted RBP19.85■□□□□ 0.77
PRKDC-207ENST00000536483 A2MP01023 1474 aa19.85■□□□□ 0.77
PRKDC-207ENST00000536483 GGT6Q6P531 493 aa19.84■□□□□ 0.77
PRKDC-207ENST00000536483 NPATQ14207 1427 aa19.84■□□□□ 0.77
PRKDC-207ENST00000536483 INO80Q9ULG1 1556 aaPredicted RBP19.83■□□□□ 0.77
PRKDC-207ENST00000536483 NCOA1Q15788 1441 aa19.83■□□□□ 0.76
PRKDC-207ENST00000536483 MROH2AA6NES4 1674 aa19.82■□□□□ 0.76
PRKDC-207ENST00000536483 VPS8Q8N3P4 1428 aa19.82■□□□□ 0.76
PRKDC-207ENST00000536483 PLXNC1O60486 1568 aa19.82■□□□□ 0.76
PRKDC-207ENST00000536483 TIAM1Q13009 1591 aa19.8■□□□□ 0.76
PRKDC-207ENST00000536483 CLTCQ00610 1675 aaKnown RBP19.79■□□□□ 0.76
PRKDC-207ENST00000536483 CAMSAP1Q5T5Y3 1602 aa19.79■□□□□ 0.76
PRKDC-207ENST00000536483 EHBP1L1Q8N3D4 1523 aa19.78■□□□□ 0.76
PRKDC-207ENST00000536483 MBD5Q9P267 1494 aa19.78■□□□□ 0.76
PRKDC-207ENST00000536483 NCKAP5LQ9HCH0 1330 aa19.77■□□□□ 0.76
PRKDC-207ENST00000536483 LTBP4Q8N2S1 1624 aa19.76■□□□□ 0.75
PRKDC-207ENST00000536483 PTPRKQ15262 1439 aa19.76■□□□□ 0.75
PRKDC-207ENST00000536483 PPP6R1Q9UPN7 881 aa19.75■□□□□ 0.75
PRKDC-207ENST00000536483 MAP3K1Q13233 1512 aa19.75■□□□□ 0.75
PRKDC-207ENST00000536483 ADGBQ8N7X0 1667 aa19.74■□□□□ 0.75
PRKDC-207ENST00000536483 RTEL1-TNFRSF6BF6WH68 1400 aa19.73■□□□□ 0.75
PRKDC-207ENST00000536483 DHX29Q7Z478 1369 aaKnown RBP19.71■□□□□ 0.75
PRKDC-207ENST00000536483 MYO3AQ8NEV4 1616 aa19.71■□□□□ 0.75
PRKDC-207ENST00000536483 PKD2Q13563 968 aa19.7■□□□□ 0.74
PRKDC-207ENST00000536483 ZNF335Q9H4Z2 1342 aaPredicted RBP19.7■□□□□ 0.74
PRKDC-207ENST00000536483 CEP170BQ9Y4F5 1589 aaPredicted RBP19.7■□□□□ 0.74
PRKDC-207ENST00000536483 NCOA2Q15596 1464 aa19.69■□□□□ 0.74
PRKDC-207ENST00000536483 ZNF142P52746 1687 aaPredicted RBP19.68■□□□□ 0.74
PRKDC-207ENST00000536483 PLA2R1Q13018 1463 aa19.68■□□□□ 0.74
PRKDC-207ENST00000536483 KIF3BO15066 747 aa19.68■□□□□ 0.74
PRKDC-207ENST00000536483 DISP3Q9P2K9 1392 aa19.68■□□□□ 0.74
PRKDC-207ENST00000536483 IQSEC2Q5JU85 1478 aa19.67■□□□□ 0.74
PRKDC-207ENST00000536483 CCDC141Q6ZP82 1450 aa19.67■□□□□ 0.74
PRKDC-207ENST00000536483 CAMSAP2Q08AD1 1489 aa19.67■□□□□ 0.74
PRKDC-207ENST00000536483 LRRC9Q6ZRR7 1453 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms