RNA–Protein interactions for RNA: ENST00000536172.5

LMO3-213, Transcript of LIM domain only 3, humanhuman

TSL 3

Gene LMO3, Length 587 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-213ENST00000536172 FBXO41Q8TF61 875 aa18.36■□□□□ 0.53
LMO3-213ENST00000536172 SCAPERQ9BY12 1400 aa18.36■□□□□ 0.53
LMO3-213ENST00000536172 YEATS2Q9ULM3 1422 aa18.34■□□□□ 0.53
LMO3-213ENST00000536172 EFCAB2Q5VUJ9 269 aa18.34■□□□□ 0.53
LMO3-213ENST00000536172 ARHGAP35Q9NRY4 1499 aa18.33■□□□□ 0.53
LMO3-213ENST00000536172 FER1L4A9Z1Z3 1794 aa18.33■□□□□ 0.53
LMO3-213ENST00000536172 KIF14Q15058 1648 aa18.33■□□□□ 0.52
LMO3-213ENST00000536172 ATP1B4Q9UN42 357 aaPredicted RBP18.32■□□□□ 0.52
LMO3-213ENST00000536172 SIGLEC1Q9BZZ2 1709 aa18.32■□□□□ 0.52
LMO3-213ENST00000536172 ATP10AO60312 1499 aa18.31■□□□□ 0.52
LMO3-213ENST00000536172 CLIP1P30622 1438 aa18.31■□□□□ 0.52
LMO3-213ENST00000536172 ZNF518AQ6AHZ1 1483 aa18.29■□□□□ 0.52
LMO3-213ENST00000536172 TROQ12816 1431 aaPredicted RBP18.29■□□□□ 0.52
LMO3-213ENST00000536172 C9orf84Q5VXU9 1444 aa18.29■□□□□ 0.52
LMO3-213ENST00000536172 ARHGAP5Q13017 1502 aa18.26■□□□□ 0.51
LMO3-213ENST00000536172 ARHGEF12Q9NZN5 1544 aa18.26■□□□□ 0.51
LMO3-213ENST00000536172 KDM5CP41229 1560 aa18.25■□□□□ 0.51
LMO3-213ENST00000536172 LRRIQ1Q96JM4 1722 aa18.24■□□□□ 0.51
LMO3-213ENST00000536172 MLECQ14165 292 aa18.23■□□□□ 0.51
LMO3-213ENST00000536172 EHMT2Q96KQ7 1210 aa18.23■□□□□ 0.51
LMO3-213ENST00000536172 PREX1Q8TCU6 1659 aa18.22■□□□□ 0.51
LMO3-213ENST00000536172 CCDC18Q5T9S5 1454 aa18.22■□□□□ 0.51
LMO3-213ENST00000536172 CDC42BPBQ9Y5S2 1711 aa18.22■□□□□ 0.51
LMO3-213ENST00000536172 REREQ9P2R6 1566 aa18.21■□□□□ 0.51
LMO3-213ENST00000536172 SETD1BQ9UPS6 1966 aaKnown RBP18.21■□□□□ 0.5
LMO3-213ENST00000536172 HSPA2P54652 639 aa18.2■□□□□ 0.5
LMO3-213ENST00000536172 PLPPR3Q6T4P5 718 aa18.2■□□□□ 0.5
LMO3-213ENST00000536172 PREX2Q70Z35 1606 aa18.2■□□□□ 0.5
LMO3-213ENST00000536172 CASKIN1Q8WXD9 1431 aa18.19■□□□□ 0.5
LMO3-213ENST00000536172 MLH3Q9UHC1 1453 aa18.18■□□□□ 0.5
LMO3-213ENST00000536172 AFAP1Q8N556 730 aa18.17■□□□□ 0.5
LMO3-213ENST00000536172 DIP2CQ9Y2E4 1556 aa18.17■□□□□ 0.5
LMO3-213ENST00000536172 MYT1LQ9UL68 1186 aa18.16■□□□□ 0.5
LMO3-213ENST00000536172 ABCC1P33527 1531 aa18.14■□□□□ 0.49
LMO3-213ENST00000536172 ITSN2Q9NZM3 1697 aa18.14■□□□□ 0.49
LMO3-213ENST00000536172 AGLP35573 1532 aa18.13■□□□□ 0.49
LMO3-213ENST00000536172 DMRT2Q9Y5R5 561 aa18.13■□□□□ 0.49
LMO3-213ENST00000536172 FYCO1Q9BQS8 1478 aa18.13■□□□□ 0.49
LMO3-213ENST00000536172 ABCA6Q8N139 1617 aa18.12■□□□□ 0.49
LMO3-213ENST00000536172 CDC42BPAQ5VT25 1732 aa18.12■□□□□ 0.49
LMO3-213ENST00000536172 UHRF1BP1Q6BDS2 1440 aa18.11■□□□□ 0.49
LMO3-213ENST00000536172 CERKQ8TCT0 537 aa18.1■□□□□ 0.49
LMO3-213ENST00000536172 CEBPAP49715 358 aaPredicted RBP18.09■□□□□ 0.49
LMO3-213ENST00000536172 ESF1Q9H501 851 aaKnown RBP18.09■□□□□ 0.49
LMO3-213ENST00000536172 C3P01024 1663 aa18.09■□□□□ 0.49
LMO3-213ENST00000536172 TRAPPC8Q9Y2L5 1435 aa18.08■□□□□ 0.49
LMO3-213ENST00000536172 KIDINS220Q9ULH0 1771 aa18.08■□□□□ 0.48
LMO3-213ENST00000536172 STRCQ7RTU9 1775 aa18.07■□□□□ 0.48
LMO3-213ENST00000536172 CNTLNQ9NXG0 1405 aa18.06■□□□□ 0.48
LMO3-213ENST00000536172 SAMD9LQ8IVG5 1584 aa18.03■□□□□ 0.48
LMO3-213ENST00000536172 MROH2AA6NES4 1674 aa18.03■□□□□ 0.48
LMO3-213ENST00000536172 PLEKHH2Q8IVE3 1493 aa18.01■□□□□ 0.47
LMO3-213ENST00000536172 GPATCH8Q9UKJ3 1502 aaKnown RBP18.01■□□□□ 0.47
LMO3-213ENST00000536172 KIAA1107Q9UPP5 1409 aa18■□□□□ 0.47
LMO3-213ENST00000536172 PTPRTO14522 1441 aa17.99■□□□□ 0.47
LMO3-213ENST00000536172 SYCP2Q9BX26 1530 aa17.99■□□□□ 0.47
LMO3-213ENST00000536172 SPAG9O60271 1321 aaKnown RBP17.98■□□□□ 0.47
LMO3-213ENST00000536172 ZNF777Q9ULD5 760 aaPredicted RBP17.98■□□□□ 0.47
LMO3-213ENST00000536172 NPATQ14207 1427 aa17.98■□□□□ 0.47
LMO3-213ENST00000536172 ATP7AQ04656 1500 aa17.96■□□□□ 0.47
LMO3-213ENST00000536172 SUPT6HQ7KZ85 1726 aaKnown RBP17.95■□□□□ 0.46
LMO3-213ENST00000536172 CCNB3Q8WWL7 1395 aa17.95■□□□□ 0.46
LMO3-213ENST00000536172 CFDP1Q9UEE9 299 aaPredicted RBP17.95■□□□□ 0.46
LMO3-213ENST00000536172 INO80Q9ULG1 1556 aaPredicted RBP17.95■□□□□ 0.46
LMO3-213ENST00000536172 MTUS2Q5JR59 1369 aa17.93■□□□□ 0.46
LMO3-213ENST00000536172 PLXNC1O60486 1568 aa17.93■□□□□ 0.46
LMO3-213ENST00000536172 HNRNPMP52272 730 aaKnown RBP eCLIP17.93■□□□□ 0.46
LMO3-213ENST00000536172 ADGBQ8N7X0 1667 aa17.93■□□□□ 0.46
LMO3-213ENST00000536172 ZMYM3Q14202 1370 aa17.91■□□□□ 0.46
LMO3-213ENST00000536172 NCOA1Q15788 1441 aa17.91■□□□□ 0.46
LMO3-213ENST00000536172 A2MP01023 1474 aa17.91■□□□□ 0.46
LMO3-213ENST00000536172 PPP6R1Q9UPN7 881 aa17.91■□□□□ 0.46
LMO3-213ENST00000536172 IQSEC2Q5JU85 1478 aa17.9■□□□□ 0.46
LMO3-213ENST00000536172 CLTCQ00610 1675 aaKnown RBP17.9■□□□□ 0.46
LMO3-213ENST00000536172 EHBP1L1Q8N3D4 1523 aa17.88■□□□□ 0.45
LMO3-213ENST00000536172 ZNF142P52746 1687 aaPredicted RBP17.88■□□□□ 0.45
LMO3-213ENST00000536172 CAMSAP1Q5T5Y3 1602 aa17.87■□□□□ 0.45
LMO3-213ENST00000536172 RTEL1-TNFRSF6BF6WH68 1400 aa17.86■□□□□ 0.45
LMO3-213ENST00000536172 TIAM1Q13009 1591 aa17.86■□□□□ 0.45
LMO3-213ENST00000536172 LTBP4Q8N2S1 1624 aa17.86■□□□□ 0.45
LMO3-213ENST00000536172 MYO3AQ8NEV4 1616 aa17.84■□□□□ 0.45
LMO3-213ENST00000536172 PLA2R1Q13018 1463 aa17.84■□□□□ 0.45
LMO3-213ENST00000536172 CEP162Q5TB80 1403 aa17.84■□□□□ 0.45
LMO3-213ENST00000536172 PKD2Q13563 968 aa17.83■□□□□ 0.44
LMO3-213ENST00000536172 MBD5Q9P267 1494 aa17.82■□□□□ 0.44
LMO3-213ENST00000536172 PTPRKQ15262 1439 aa17.82■□□□□ 0.44
LMO3-213ENST00000536172 GGT6Q6P531 493 aa17.82■□□□□ 0.44
LMO3-213ENST00000536172 CEP170BQ9Y4F5 1589 aaPredicted RBP17.82■□□□□ 0.44
LMO3-213ENST00000536172 RSPH4AQ5TD94 716 aa17.8■□□□□ 0.44
LMO3-213ENST00000536172 SENP3Q9H4L4 574 aaPredicted RBP17.8■□□□□ 0.44
LMO3-213ENST00000536172 FAM135AQ9P2D6 1515 aa17.8■□□□□ 0.44
LMO3-213ENST00000536172 DHX29Q7Z478 1369 aaKnown RBP17.79■□□□□ 0.44
LMO3-213ENST00000536172 ZNF644Q9H582 1327 aaPredicted RBP17.77■□□□□ 0.44
LMO3-213ENST00000536172 TCOF1Q13428 1488 aaKnown RBP17.77■□□□□ 0.44
LMO3-213ENST00000536172 CCDC141Q6ZP82 1450 aa17.76■□□□□ 0.43
LMO3-213ENST00000536172 DISP3Q9P2K9 1392 aa17.76■□□□□ 0.43
LMO3-213ENST00000536172 NCKAP5LQ9HCH0 1330 aa17.75■□□□□ 0.43
LMO3-213ENST00000536172 A2ML1A8K2U0 1454 aa17.75■□□□□ 0.43
LMO3-213ENST00000536172 NCOA2Q15596 1464 aa17.74■□□□□ 0.43
LMO3-213ENST00000536172 CAMSAP2Q08AD1 1489 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms