RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 CARMIL1Q5VZK9 1371 aa9.4□□□□□ -0.9
SYNE1-233ENST00000535896 MAP3K1Q13233 1512 aa9.4□□□□□ -0.91
SYNE1-233ENST00000535896 ARAP1Q96P48 1450 aa9.38□□□□□ -0.91
SYNE1-233ENST00000535896 RRBP1Q9P2E9 1410 aaKnown RBP9.38□□□□□ -0.91
SYNE1-233ENST00000535896 MYT1Q01538 1121 aa9.37□□□□□ -0.91
SYNE1-233ENST00000535896 NUP160Q12769 1436 aa9.37□□□□□ -0.91
SYNE1-233ENST00000535896 POTEB2H3BUK9 544 aa9.37□□□□□ -0.91
SYNE1-233ENST00000535896 MNX1P50219 401 aaPredicted RBP9.36□□□□□ -0.91
SYNE1-233ENST00000535896 NEUROD1Q13562 356 aa9.36□□□□□ -0.91
SYNE1-233ENST00000535896 CLASP1Q7Z460 1538 aa9.35□□□□□ -0.91
SYNE1-233ENST00000535896 CEP170Q5SW79 1584 aa9.34□□□□□ -0.91
SYNE1-233ENST00000535896 DNAJC5Q9H3Z4 198 aa9.32□□□□□ -0.92
SYNE1-233ENST00000535896 CFAP43Q8NDM7 1665 aa9.32□□□□□ -0.92
SYNE1-233ENST00000535896 KIAA0586Q9BVV6 1533 aa9.31□□□□□ -0.92
SYNE1-233ENST00000535896 C7P10643 843 aa9.29□□□□□ -0.92
SYNE1-233ENST00000535896 ASTLQ6HA08 431 aaPredicted RBP9.29□□□□□ -0.92
SYNE1-233ENST00000535896 DHX57Q6P158 1386 aaKnown RBP9.29□□□□□ -0.92
SYNE1-233ENST00000535896 TIAM1Q13009 1591 aa9.29□□□□□ -0.92
SYNE1-233ENST00000535896 SHROOM2Q13796 1616 aa9.28□□□□□ -0.92
SYNE1-233ENST00000535896 POTEMA6NI47 508 aa9.28□□□□□ -0.92
SYNE1-233ENST00000535896 SLC39A7Q92504 469 aa9.28□□□□□ -0.92
SYNE1-233ENST00000535896 MS4A3Q96HJ5 214 aa9.28□□□□□ -0.92
SYNE1-233ENST00000535896 PCDH10Q9P2E7 1040 aa9.28□□□□□ -0.92
SYNE1-233ENST00000535896 GTF3C3Q9Y5Q9 886 aa9.28□□□□□ -0.92
SYNE1-233ENST00000535896 IQGAP2Q13576 1575 aa9.28□□□□□ -0.92
SYNE1-233ENST00000535896 CTTNBP2Q8WZ74 1663 aa9.27□□□□□ -0.92
SYNE1-233ENST00000535896 ARHGAP35Q9NRY4 1499 aa9.27□□□□□ -0.92
SYNE1-233ENST00000535896 MAMSTRQ6ZN01 415 aa9.26□□□□□ -0.93
SYNE1-233ENST00000535896 ARHGEF11O15085 1522 aa9.26□□□□□ -0.93
SYNE1-233ENST00000535896 POTEGQ6S5H5 508 aa9.25□□□□□ -0.93
SYNE1-233ENST00000535896 METRNQ9UJH8 293 aa9.25□□□□□ -0.93
SYNE1-233ENST00000535896 EFCAB5A4FU69 1503 aa9.25□□□□□ -0.93
SYNE1-233ENST00000535896 ATMINO43313 823 aaPredicted RBP9.24□□□□□ -0.93
SYNE1-233ENST00000535896 CCNB3Q8WWL7 1395 aa9.24□□□□□ -0.93
SYNE1-233ENST00000535896 JPH4Q96JJ6 628 aa9.24□□□□□ -0.93
SYNE1-233ENST00000535896 TTBK1Q5TCY1 1321 aaPredicted RBP9.24□□□□□ -0.93
SYNE1-233ENST00000535896 UGGT2Q9NYU1 1516 aa9.23□□□□□ -0.93
SYNE1-233ENST00000535896 RIMBP3CA6NJZ7 1639 aa9.23□□□□□ -0.93
SYNE1-233ENST00000535896 RIMBP3BA6NNM3 1639 aa9.23□□□□□ -0.93
SYNE1-233ENST00000535896 RIMBP3Q9UFD9 1639 aa9.23□□□□□ -0.93
SYNE1-233ENST00000535896 CARMIL2Q6F5E8 1435 aa9.22□□□□□ -0.93
SYNE1-233ENST00000535896 PRG4Q92954 1404 aaPredicted RBP9.22□□□□□ -0.93
SYNE1-233ENST00000535896 TSPYL2Q9H2G4 693 aaPredicted RBP9.22□□□□□ -0.93
SYNE1-233ENST00000535896 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.2□□□□□ -0.94
SYNE1-233ENST00000535896 FYCO1Q9BQS8 1478 aa9.19□□□□□ -0.94
SYNE1-233ENST00000535896 POTEJP0CG39 1038 aa9.19□□□□□ -0.94
SYNE1-233ENST00000535896 DISP1Q96F81 1524 aa9.19□□□□□ -0.94
SYNE1-233ENST00000535896 LRRC9Q6ZRR7 1453 aa9.19□□□□□ -0.94
SYNE1-233ENST00000535896 KIAA0556O60303 1618 aa9.18□□□□□ -0.94
SYNE1-233ENST00000535896 ERCC6L2Q5T890 1561 aa9.18□□□□□ -0.94
SYNE1-233ENST00000535896 SAMD9Q5K651 1589 aa9.17□□□□□ -0.94
SYNE1-233ENST00000535896 MAPKBP1O60336 1514 aa9.17□□□□□ -0.94
SYNE1-233ENST00000535896 MIER1Q8N108 512 aa9.17□□□□□ -0.94
SYNE1-233ENST00000535896 PROM2Q8N271 834 aa9.17□□□□□ -0.94
SYNE1-233ENST00000535896 CCDC61Q9Y6R9 512 aa9.17□□□□□ -0.94
SYNE1-233ENST00000535896 PCF11O94913 1555 aaKnown RBP9.17□□□□□ -0.94
SYNE1-233ENST00000535896 TIMELESSQ9UNS1 1208 aa9.16□□□□□ -0.94
SYNE1-233ENST00000535896 ATN1P54259 1190 aaPredicted RBP9.15□□□□□ -0.94
SYNE1-233ENST00000535896 SCUBE2Q9NQ36 999 aa9.15□□□□□ -0.94
SYNE1-233ENST00000535896 PTPRGP23470 1445 aa9.13□□□□□ -0.95
SYNE1-233ENST00000535896 SETD5Q9C0A6 1442 aa9.13□□□□□ -0.95
SYNE1-233ENST00000535896 KANK4Q5T7N3 995 aaPredicted RBP9.13□□□□□ -0.95
SYNE1-233ENST00000535896 KIF12Q96FN5 646 aa9.13□□□□□ -0.95
SYNE1-233ENST00000535896 CYB5RLQ6IPT4 315 aa9.12□□□□□ -0.95
SYNE1-233ENST00000535896 CASKIN1Q8WXD9 1431 aa9.12□□□□□ -0.95
SYNE1-233ENST00000535896 RAB3GAP2Q9H2M9 1393 aa9.11□□□□□ -0.95
SYNE1-233ENST00000535896 PLEKHG5O94827 1062 aa9.11□□□□□ -0.95
SYNE1-233ENST00000535896 FMN1Q68DA7 1419 aa9.1□□□□□ -0.95
SYNE1-233ENST00000535896 BMP2KQ9NSY1 1161 aaPredicted RBP9.1□□□□□ -0.95
SYNE1-233ENST00000535896 UHRF1BP1LA0JNW5 1464 aa9.09□□□□□ -0.95
SYNE1-233ENST00000535896 FAM163AQ96GL9 167 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-233ENST00000535896 ABCC2Q92887 1545 aa9.09□□□□□ -0.95
SYNE1-233ENST00000535896 FHOD3Q2V2M9 1422 aa9.08□□□□□ -0.96
SYNE1-233ENST00000535896 UACAQ9BZF9 1416 aa9.08□□□□□ -0.96
SYNE1-233ENST00000535896 TIE1P35590 1138 aa9.08□□□□□ -0.96
SYNE1-233ENST00000535896 RANGAP1P46060 587 aaPredicted RBP9.08□□□□□ -0.96
SYNE1-233ENST00000535896 TRPC6Q9Y210 931 aa9.08□□□□□ -0.96
SYNE1-233ENST00000535896 MAP3K13O43283 966 aa9.07□□□□□ -0.96
SYNE1-233ENST00000535896 YTHDC1Q96MU7 727 aaKnown RBP9.07□□□□□ -0.96
SYNE1-233ENST00000535896 ABCA8O94911 1581 aa9.07□□□□□ -0.96
SYNE1-233ENST00000535896 ADCY10Q96PN6 1610 aa9.07□□□□□ -0.96
SYNE1-233ENST00000535896 PHLDB1Q86UU1 1377 aa9.06□□□□□ -0.96
SYNE1-233ENST00000535896 SUPT6HQ7KZ85 1726 aaKnown RBP9.06□□□□□ -0.96
SYNE1-233ENST00000535896 POTEFA5A3E0 1075 aa9.06□□□□□ -0.96
SYNE1-233ENST00000535896 LCE2DQ5TA82 110 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-233ENST00000535896 P3H3Q8IVL6 736 aa9.06□□□□□ -0.96
SYNE1-233ENST00000535896 GCC2Q8IWJ2 1684 aa9.06□□□□□ -0.96
SYNE1-233ENST00000535896 EHBP1L1Q8N3D4 1523 aa9.06□□□□□ -0.96
SYNE1-233ENST00000535896 RASEFQ8IZ41 740 aa9.05□□□□□ -0.96
SYNE1-233ENST00000535896 PLB1Q6P1J6 1458 aa9.05□□□□□ -0.96
SYNE1-233ENST00000535896 RAPGEF6Q8TEU7 1601 aa9.04□□□□□ -0.96
SYNE1-233ENST00000535896 AKNAQ7Z591 1439 aa9.04□□□□□ -0.96
SYNE1-233ENST00000535896 KDM5BQ9UGL1 1544 aa9.03□□□□□ -0.96
SYNE1-233ENST00000535896 SLC24A1O60721 1099 aa9.03□□□□□ -0.96
SYNE1-233ENST00000535896 HECW1Q76N89 1606 aa9.03□□□□□ -0.96
SYNE1-233ENST00000535896 PTPN23Q9H3S7 1636 aa9.03□□□□□ -0.96
SYNE1-233ENST00000535896 HFM1A2PYH4 1435 aa9.03□□□□□ -0.96
SYNE1-233ENST00000535896 FGD6Q6ZV73 1430 aa9.03□□□□□ -0.96
SYNE1-233ENST00000535896 LRRIQ1Q96JM4 1722 aa9.03□□□□□ -0.96
SYNE1-233ENST00000535896 CCDC18Q5T9S5 1454 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms