RNA–Protein interactions for RNA: ENST00000535302.6

SPG11-203, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SPG11, Length 7,288 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-203ENST00000535302 MORC1Q86VD1 984 aa16.18■□□□□ 0.18
SPG11-203ENST00000535302 CEP164Q9UPV0 1460 aa16.16■□□□□ 0.18
SPG11-203ENST00000535302 GNL2Q13823 731 aaKnown RBP16.16■□□□□ 0.18
SPG11-203ENST00000535302 TNIKQ9UKE5 1360 aa16.15■□□□□ 0.18
SPG11-203ENST00000535302 CREBRFQ8IUR6 639 aa16.15■□□□□ 0.18
SPG11-203ENST00000535302 HSPA5P11021 654 aaKnown RBP16.14■□□□□ 0.17
SPG11-203ENST00000535302 ANP32EQ9BTT0 268 aa16.14■□□□□ 0.17
SPG11-203ENST00000535302 NOC3LQ8WTT2 800 aaKnown RBP16.13■□□□□ 0.17
SPG11-203ENST00000535302 NOP58Q9Y2X3 529 aaKnown RBP16.13■□□□□ 0.17
SPG11-203ENST00000535302 SOGA1O94964 1423 aa16.12■□□□□ 0.17
SPG11-203ENST00000535302 EEA1Q15075 1411 aa16.12■□□□□ 0.17
SPG11-203ENST00000535302 WWC1Q8IX03 1113 aa16.11■□□□□ 0.17
SPG11-203ENST00000535302 MSNP26038 577 aaKnown RBP16.11■□□□□ 0.17
SPG11-203ENST00000535302 KANK1Q14678 1352 aa16.1■□□□□ 0.17
SPG11-203ENST00000535302 PKD2Q13563 968 aa16.1■□□□□ 0.17
SPG11-203ENST00000535302 CUX2O14529 1486 aa16.09■□□□□ 0.17
SPG11-203ENST00000535302 PNNQ9H307 717 aaKnown RBP16.09■□□□□ 0.17
SPG11-203ENST00000535302 CCDC180Q9P1Z9 1646 aa16.08■□□□□ 0.16
SPG11-203ENST00000535302 HSCBQ8IWL3 235 aa16.08■□□□□ 0.16
SPG11-203ENST00000535302 RTF1Q92541 710 aaKnown RBP16.08■□□□□ 0.16
SPG11-203ENST00000535302 KANK4Q5T7N3 995 aaPredicted RBP16.08■□□□□ 0.16
SPG11-203ENST00000535302 FOXD4L1Q9NU39 408 aa16.08■□□□□ 0.16
SPG11-203ENST00000535302 CHAF1AQ13111 956 aaPredicted RBP16.08■□□□□ 0.16
SPG11-203ENST00000535302 NOL8Q76FK4 1167 aaKnown RBP16.07■□□□□ 0.16
SPG11-203ENST00000535302 HSP90B1P14625 803 aaKnown RBP16.06■□□□□ 0.16
SPG11-203ENST00000535302 CARMIL1Q5VZK9 1371 aa16.06■□□□□ 0.16
SPG11-203ENST00000535302 CSB-PGBD3P0DP91 1061 aa16.06■□□□□ 0.16
SPG11-203ENST00000535302 NUTM2FA1L443 756 aa16.04■□□□□ 0.16
SPG11-203ENST00000535302 CCDC9Q9Y3X0 531 aaKnown RBP16.04■□□□□ 0.16
SPG11-203ENST00000535302 CHMP3Q9Y3E7 222 aa16.04■□□□□ 0.16
SPG11-203ENST00000535302 FOXD4L5Q5VV16 416 aaPredicted RBP16.03■□□□□ 0.16
SPG11-203ENST00000535302 FOXD4L4Q8WXT5 416 aaPredicted RBP16.03■□□□□ 0.16
SPG11-203ENST00000535302 CECR2Q9BXF3 1484 aa16.03■□□□□ 0.16
SPG11-203ENST00000535302 U2AF1L5P0DN76 240 aaPredicted RBP16.03■□□□□ 0.16
SPG11-203ENST00000535302 DEKP35659 375 aaKnown RBP16.03■□□□□ 0.16
SPG11-203ENST00000535302 U2AF1Q01081 240 aaKnown RBP eCLIP16.03■□□□□ 0.165e-6■■■□□ 15.5
SPG11-203ENST00000535302 NRDCO43847 1150 aa16.03■□□□□ 0.16
SPG11-203ENST00000535302 ITPRIPQ8IWB1 547 aa16.03■□□□□ 0.16
SPG11-203ENST00000535302 CCDC146Q8IYE0 955 aa16.02■□□□□ 0.16
SPG11-203ENST00000535302 SLKQ9H2G2 1235 aaPredicted RBP16.01■□□□□ 0.15
SPG11-203ENST00000535302 A0A0U1RQG5 324 aaPredicted RBP16■□□□□ 0.15
SPG11-203ENST00000535302 ROCK2O75116 1388 aaKnown RBP16■□□□□ 0.15
SPG11-203ENST00000535302 KIAA2012Q0VF49 1180 aa16■□□□□ 0.15
SPG11-203ENST00000535302 HDGFL2Q7Z4V5 671 aaPredicted RBP16■□□□□ 0.15
SPG11-203ENST00000535302 ABCC8Q09428 1581 aa16■□□□□ 0.15
SPG11-203ENST00000535302 MS4A1P11836 297 aa15.99■□□□□ 0.15
SPG11-203ENST00000535302 CHMP4BQ9H444 224 aaKnown RBP15.98■□□□□ 0.15
SPG11-203ENST00000535302 KTN1Q86UP2 1357 aaKnown RBP15.97■□□□□ 0.15
SPG11-203ENST00000535302 SETD5Q9C0A6 1442 aa15.97■□□□□ 0.15
SPG11-203ENST00000535302 HDGFP51858 240 aaKnown RBP15.97■□□□□ 0.15
SPG11-203ENST00000535302 VPS53Q5VIR6 699 aa15.97■□□□□ 0.15
SPG11-203ENST00000535302 LTV1Q96GA3 475 aaPredicted RBP15.97■□□□□ 0.15
SPG11-203ENST00000535302 HNRNPMP52272 730 aaKnown RBP eCLIP15.96■□□□□ 0.15
SPG11-203ENST00000535302 ARHGAP35Q9NRY4 1499 aa15.96■□□□□ 0.15
SPG11-203ENST00000535302 MCCP23508 829 aa15.95■□□□□ 0.14
SPG11-203ENST00000535302 PATL2C9JE40 543 aaKnown RBP15.95■□□□□ 0.14
SPG11-203ENST00000535302 FHAD1B1AJZ9 1412 aa15.95■□□□□ 0.14
SPG11-203ENST00000535302 CLUAP1Q96AJ1 413 aa15.94■□□□□ 0.14
SPG11-203ENST00000535302 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.94■□□□□ 0.14
SPG11-203ENST00000535302 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.94■□□□□ 0.14
SPG11-203ENST00000535302 MPHOSPH9Q99550 1183 aa15.94■□□□□ 0.14
SPG11-203ENST00000535302 FOXD4L6Q3SYB3 417 aaPredicted RBP15.93■□□□□ 0.14
SPG11-203ENST00000535302 FOXD4L3Q6VB84 417 aaPredicted RBP15.93■□□□□ 0.14
SPG11-203ENST00000535302 NUP155O75694 1391 aa15.93■□□□□ 0.14
SPG11-203ENST00000535302 SLC4A10Q6U841 1118 aa15.93■□□□□ 0.14
SPG11-203ENST00000535302 TDRD9Q8NDG6 1382 aaKnown RBP15.93■□□□□ 0.14
SPG11-203ENST00000535302 KIAA1211Q6ZU35 1233 aa15.92■□□□□ 0.14
SPG11-203ENST00000535302 MFAP1P55081 439 aaKnown RBP15.92■□□□□ 0.14
SPG11-203ENST00000535302 KIF3BO15066 747 aa15.91■□□□□ 0.14
SPG11-203ENST00000535302 G3V3G9 751 aa15.91■□□□□ 0.14
SPG11-203ENST00000535302 DCAF8Q5TAQ9 597 aa15.91■□□□□ 0.14
SPG11-203ENST00000535302 RCAN3Q9UKA8 241 aa15.91■□□□□ 0.14
SPG11-203ENST00000535302 RBM19Q9Y4C8 960 aaKnown RBP15.91■□□□□ 0.14
SPG11-203ENST00000535302 TRIM6-TRIM34B2RNG4 842 aa15.91■□□□□ 0.14
SPG11-203ENST00000535302 RASSF8Q8NHQ8 419 aa15.9■□□□□ 0.14
SPG11-203ENST00000535302 GORABQ5T7V8 394 aa15.89■□□□□ 0.13
SPG11-203ENST00000535302 RRP7AQ9Y3A4 280 aaKnown RBP15.89■□□□□ 0.13
SPG11-203ENST00000535302 TNNT3P45378 269 aaPredicted RBP15.89■□□□□ 0.13
SPG11-203ENST00000535302 NACADO15069 1562 aa15.89■□□□□ 0.13
SPG11-203ENST00000535302 PES1O00541 588 aaKnown RBP15.89■□□□□ 0.13
SPG11-203ENST00000535302 BCL11BQ9C0K0 894 aaPredicted RBP15.89■□□□□ 0.13
SPG11-203ENST00000535302 RAB3GAP2Q9H2M9 1393 aa15.88■□□□□ 0.13
SPG11-203ENST00000535302 TAF7LQ5H9L4 462 aa15.88■□□□□ 0.13
SPG11-203ENST00000535302 TOMM22Q9NS69 142 aa15.87■□□□□ 0.13
SPG11-203ENST00000535302 SMC4Q9NTJ3 1288 aa15.87■□□□□ 0.13
SPG11-203ENST00000535302 IPO8O15397 1037 aaKnown RBP15.86■□□□□ 0.13
SPG11-203ENST00000535302 RAD21O60216 631 aa15.85■□□□□ 0.13
SPG11-203ENST00000535302 BAZ1AQ9NRL2 1556 aaPredicted RBP15.85■□□□□ 0.13
SPG11-203ENST00000535302 L1TD1Q5T7N2 865 aaKnown RBP15.85■□□□□ 0.13
SPG11-203ENST00000535302 TRAK1Q9UPV9 953 aa15.85■□□□□ 0.13
SPG11-203ENST00000535302 NGDNQ8NEJ9 315 aaKnown RBP15.84■□□□□ 0.13
SPG11-203ENST00000535302 CCER2I3L3R5 266 aa15.83■□□□□ 0.12
SPG11-203ENST00000535302 ELL2O00472 640 aaPredicted RBP15.82■□□□□ 0.12
SPG11-203ENST00000535302 CCDC88BA6NC98 1476 aa15.82■□□□□ 0.12
SPG11-203ENST00000535302 STK31Q9BXU1 1019 aa15.82■□□□□ 0.12
SPG11-203ENST00000535302 TMX4Q9H1E5 349 aaPredicted RBP15.82■□□□□ 0.12
SPG11-203ENST00000535302 RWDD1Q9H446 243 aaPredicted RBP15.82■□□□□ 0.12
SPG11-203ENST00000535302 FRAT2O75474 233 aaPredicted RBP15.81■□□□□ 0.12
SPG11-203ENST00000535302 L3MBTL2Q969R5 705 aa15.81■□□□□ 0.12
SPG11-203ENST00000535302 BCL2L13Q9BXK5 485 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms