RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 MMRN1Q13201 1228 aa15.23■□□□□ 0.03
SYNE1-232ENST00000535081 STK25O00506 426 aa15.22■□□□□ 0.03
SYNE1-232ENST00000535081 FBXO22Q8NEZ5 403 aa15.22■□□□□ 0.03
SYNE1-232ENST00000535081 KRTAP3-3Q9BYR6 98 aa15.21■□□□□ 0.03
SYNE1-232ENST00000535081 KRTAP3-2Q9BYR7 98 aa15.21■□□□□ 0.03
SYNE1-232ENST00000535081 PKD2Q13563 968 aa15.18■□□□□ 0.02
SYNE1-232ENST00000535081 MFRPQ9BY79 579 aa15.17■□□□□ 0.02
SYNE1-232ENST00000535081 ERBB3P21860 1342 aa15.16■□□□□ 0.02
SYNE1-232ENST00000535081 RGL2O15211 777 aa15.15■□□□□ 0.02
SYNE1-232ENST00000535081 ZSWIM6Q9HCJ5 1215 aa15.14■□□□□ 0.01
SYNE1-232ENST00000535081 VARS2Q5ST30 1063 aaKnown RBP15.07■□□□□ 0
SYNE1-232ENST00000535081 GPR153Q6NV75 609 aa15.07■□□□□ 0
SYNE1-232ENST00000535081 KIF3CO14782 793 aa14.99□□□□□ -0.01
SYNE1-232ENST00000535081 ARSIQ5FYB1 569 aa14.99□□□□□ -0.01
SYNE1-232ENST00000535081 C2orf72A6NCS6 295 aa14.98□□□□□ -0.01
SYNE1-232ENST00000535081 ZNF687Q8N1G0 1237 aa14.95□□□□□ -0.02
SYNE1-232ENST00000535081 KHSRPQ92945 711 aaKnown RBP eCLIP14.93□□□□□ -0.02
SYNE1-232ENST00000535081 TMC2Q8TDI7 906 aa14.89□□□□□ -0.03
SYNE1-232ENST00000535081 ZNF316A6NFI3 1004 aaPredicted RBP14.88□□□□□ -0.03
SYNE1-232ENST00000535081 PPP1R37O75864 691 aa14.88□□□□□ -0.03
SYNE1-232ENST00000535081 HS6ST3Q8IZP7 471 aa14.85□□□□□ -0.03
SYNE1-232ENST00000535081 SLC34A2O95436 690 aa14.83□□□□□ -0.04
SYNE1-232ENST00000535081 NUDT7P0C024 238 aa14.82□□□□□ -0.04
SYNE1-232ENST00000535081 RNF166Q96A37 237 aaPredicted RBP14.81□□□□□ -0.04
SYNE1-232ENST00000535081 PCDHGA4Q9Y5G9 962 aa14.81□□□□□ -0.04
SYNE1-232ENST00000535081 MYT1LQ9UL68 1186 aa14.78□□□□□ -0.04
SYNE1-232ENST00000535081 CHGAP10645 457 aaKnown RBP14.75□□□□□ -0.05
SYNE1-232ENST00000535081 PTGER2P43116 358 aa14.74□□□□□ -0.05
SYNE1-232ENST00000535081 LHX6Q9UPM6 363 aa14.74□□□□□ -0.05
SYNE1-232ENST00000535081 ANKRD13DQ6ZTN6 518 aa14.73□□□□□ -0.05
SYNE1-232ENST00000535081 LSM11P83369 360 aaKnown RBP eCLIP14.72□□□□□ -0.05
SYNE1-232ENST00000535081 PBX2P40425 430 aa14.7□□□□□ -0.06
SYNE1-232ENST00000535081 FOXK1P85037 733 aa14.68□□□□□ -0.06
SYNE1-232ENST00000535081 GPHNQ9NQX3 736 aaPredicted RBP14.67□□□□□ -0.06
SYNE1-232ENST00000535081 PLPP6Q8IY26 295 aa14.65□□□□□ -0.06
SYNE1-232ENST00000535081 PTCD2Q8WV60 388 aaKnown RBP14.65□□□□□ -0.06
SYNE1-232ENST00000535081 DNAJC5Q9H3Z4 198 aa14.65□□□□□ -0.06
SYNE1-232ENST00000535081 NKX1-1Q15270 411 aaPredicted RBP14.64□□□□□ -0.07
SYNE1-232ENST00000535081 POTEEQ6S8J3 1075 aa14.64□□□□□ -0.07
SYNE1-232ENST00000535081 DSG2Q14126 1118 aa14.62□□□□□ -0.07
SYNE1-232ENST00000535081 AXIN2Q9Y2T1 843 aa14.62□□□□□ -0.07
SYNE1-232ENST00000535081 KDM4FA0A1W2PPD8 638 aa14.61□□□□□ -0.07
SYNE1-232ENST00000535081 PSDA5PKW4 1024 aaPredicted RBP14.61□□□□□ -0.07
SYNE1-232ENST00000535081 RYDENQ9NUL5 291 aaKnown RBP14.6□□□□□ -0.07
SYNE1-232ENST00000535081 ARHGAP33O14559 1287 aa14.54□□□□□ -0.08
SYNE1-232ENST00000535081 TBC1D12O60347 775 aa14.53□□□□□ -0.08
SYNE1-232ENST00000535081 CRISPLD2Q9H0B8 497 aa14.5□□□□□ -0.09
SYNE1-232ENST00000535081 PPP4R3BQ5MIZ7 849 aa14.49□□□□□ -0.09
SYNE1-232ENST00000535081 ADGRD1Q6QNK2 874 aa14.49□□□□□ -0.09
SYNE1-232ENST00000535081 OXER1Q8TDS5 423 aa14.46□□□□□ -0.09
SYNE1-232ENST00000535081 PPP1R15BQ5SWA1 713 aa14.45□□□□□ -0.1
SYNE1-232ENST00000535081 UPF1Q92900 1129 aaKnown RBP eCLIP14.45□□□□□ -0.1
SYNE1-232ENST00000535081 PSEN2P49810 448 aa14.44□□□□□ -0.1
SYNE1-232ENST00000535081 DMRTA1Q5VZB9 504 aa14.43□□□□□ -0.1
SYNE1-232ENST00000535081 TK2O00142 265 aa14.42□□□□□ -0.1
SYNE1-232ENST00000535081 NCKAP5LQ9HCH0 1330 aa14.41□□□□□ -0.1
SYNE1-232ENST00000535081 GTPBP6O43824 516 aaPredicted RBP14.4□□□□□ -0.1
SYNE1-232ENST00000535081 PDE4AP27815 886 aa14.39□□□□□ -0.11
SYNE1-232ENST00000535081 HRO43593 1189 aa14.37□□□□□ -0.11
SYNE1-232ENST00000535081 KCNH8Q96L42 1107 aa14.36□□□□□ -0.11
SYNE1-232ENST00000535081 KCNK17Q96T54 332 aa14.36□□□□□ -0.11
SYNE1-232ENST00000535081 DCAF8L2P0C7V8 631 aa14.35□□□□□ -0.11
SYNE1-232ENST00000535081 ZNF454Q8N9F8 522 aa14.34□□□□□ -0.11
SYNE1-232ENST00000535081 HCSTQ9UBK5 93 aa14.34□□□□□ -0.11
SYNE1-232ENST00000535081 DDX27Q96GQ7 796 aaKnown RBP14.3□□□□□ -0.12
SYNE1-232ENST00000535081 LARP6Q9BRS8 491 aaKnown RBP14.3□□□□□ -0.12
SYNE1-232ENST00000535081 BCL2L12Q9HB09 334 aa14.29□□□□□ -0.12
SYNE1-232ENST00000535081 FOSBP53539 338 aa14.28□□□□□ -0.12
SYNE1-232ENST00000535081 STAC3Q96MF2 364 aa14.27□□□□□ -0.13
SYNE1-232ENST00000535081 MFSD10Q14728 455 aa14.26□□□□□ -0.13
SYNE1-232ENST00000535081 EVI5O60447 810 aa14.25□□□□□ -0.13
SYNE1-232ENST00000535081 ANO8Q9HCE9 1232 aaPredicted RBP14.25□□□□□ -0.13
SYNE1-232ENST00000535081 PLA2G2EQ9NZK7 142 aa14.25□□□□□ -0.13
SYNE1-232ENST00000535081 VPS9D1Q9Y2B5 631 aa14.25□□□□□ -0.13
SYNE1-232ENST00000535081 KCTD12Q96CX2 325 aaKnown RBP14.24□□□□□ -0.13
SYNE1-232ENST00000535081 JPH4Q96JJ6 628 aa14.24□□□□□ -0.13
SYNE1-232ENST00000535081 PTPREP23469 700 aa14.22□□□□□ -0.13
SYNE1-232ENST00000535081 SLC4A5Q9BY07 1137 aa14.2□□□□□ -0.14
SYNE1-232ENST00000535081 MAP3K9P80192 1104 aa14.19□□□□□ -0.14
SYNE1-232ENST00000535081 ZDHHC16Q969W1 377 aa14.18□□□□□ -0.14
SYNE1-232ENST00000535081 EMILIN3Q9NT22 766 aa14.17□□□□□ -0.14
SYNE1-232ENST00000535081 CADPS2Q86UW7 1296 aa14.16□□□□□ -0.14
SYNE1-232ENST00000535081 ZBED2Q9BTP6 218 aa14.16□□□□□ -0.14
SYNE1-232ENST00000535081 ADAM33Q9BZ11 813 aa14.16□□□□□ -0.14
SYNE1-232ENST00000535081 BHMG1C9JSJ3 638 aaPredicted RBP14.12□□□□□ -0.15
SYNE1-232ENST00000535081 PCDHGA10Q9Y5H3 936 aa14.08□□□□□ -0.16
SYNE1-232ENST00000535081 PTPN5P54829 565 aa14.07□□□□□ -0.16
SYNE1-232ENST00000535081 MRPL50Q8N5N7 158 aaKnown RBP14.07□□□□□ -0.16
SYNE1-232ENST00000535081 GOLGA8CPA6NN73 597 aa14.05□□□□□ -0.16
SYNE1-232ENST00000535081 PPP1R3GB7ZBB8 358 aa14.05□□□□□ -0.16
SYNE1-232ENST00000535081 THSD4Q6ZMP0 1018 aa14.05□□□□□ -0.16
SYNE1-232ENST00000535081 NBPF3Q9H094 633 aa14.05□□□□□ -0.16
SYNE1-232ENST00000535081 CAMK2BQ13554 666 aa14.03□□□□□ -0.16
SYNE1-232ENST00000535081 WNT2BQ93097 391 aa14.03□□□□□ -0.16
SYNE1-232ENST00000535081 PHF14O94880 888 aa14.02□□□□□ -0.17
SYNE1-232ENST00000535081 TYW1BQ6NUM6 668 aa14.02□□□□□ -0.17
SYNE1-232ENST00000535081 FBXW7Q969H0 707 aa14.02□□□□□ -0.17
SYNE1-232ENST00000535081 DPYSL4O14531 572 aa13.98□□□□□ -0.17
SYNE1-232ENST00000535081 COL9A1P20849 921 aa13.98□□□□□ -0.17
SYNE1-232ENST00000535081 BBXQ8WY36 941 aaPredicted RBP13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms