RNA–Protein interactions for RNA: ENST00000533946.5

SSBP3-215, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 3

Gene SSBP3, Length 431 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-215ENST00000533946 CDC42BPAQ5VT25 1732 aa15.6■□□□□ 0.09
SSBP3-215ENST00000533946 ARHGAP5Q13017 1502 aa15.6■□□□□ 0.09
SSBP3-215ENST00000533946 CDK11AQ9UQ88 783 aaPredicted RBP15.6■□□□□ 0.09
SSBP3-215ENST00000533946 ADAMTSL3P82987 1691 aa15.6■□□□□ 0.09
SSBP3-215ENST00000533946 POGZQ7Z3K3 1410 aa15.6■□□□□ 0.09
SSBP3-215ENST00000533946 CCDC18Q5T9S5 1454 aa15.59■□□□□ 0.09
SSBP3-215ENST00000533946 ARHGEF40Q8TER5 1519 aa15.59■□□□□ 0.09
SSBP3-215ENST00000533946 CFAP74Q9C0B2 1584 aa15.59■□□□□ 0.09
SSBP3-215ENST00000533946 EFCAB2Q5VUJ9 269 aa15.59■□□□□ 0.09
SSBP3-215ENST00000533946 ZMYM4Q5VZL5 1548 aa15.58■□□□□ 0.08
SSBP3-215ENST00000533946 PREX2Q70Z35 1606 aa15.57■□□□□ 0.08
SSBP3-215ENST00000533946 BCORL1Q5H9F3 1711 aa15.57■□□□□ 0.08
SSBP3-215ENST00000533946 ARID4BQ4LE39 1312 aaPredicted RBP15.57■□□□□ 0.08
SSBP3-215ENST00000533946 TRAPPC8Q9Y2L5 1435 aa15.57■□□□□ 0.08
SSBP3-215ENST00000533946 MADDQ8WXG6 1647 aa15.57■□□□□ 0.08
SSBP3-215ENST00000533946 ZFYVE16Q7Z3T8 1539 aa15.56■□□□□ 0.08
SSBP3-215ENST00000533946 MLECQ14165 292 aa15.55■□□□□ 0.08
SSBP3-215ENST00000533946 GPATCH8Q9UKJ3 1502 aaKnown RBP15.54■□□□□ 0.08
SSBP3-215ENST00000533946 PLPPR3Q6T4P5 718 aa15.54■□□□□ 0.08
SSBP3-215ENST00000533946 ZNF644Q9H582 1327 aaPredicted RBP15.53■□□□□ 0.08
SSBP3-215ENST00000533946 ZNF777Q9ULD5 760 aaPredicted RBP15.53■□□□□ 0.08
SSBP3-215ENST00000533946 SAMD9LQ8IVG5 1584 aa15.53■□□□□ 0.08
SSBP3-215ENST00000533946 HECW2Q9P2P5 1572 aa15.53■□□□□ 0.08
SSBP3-215ENST00000533946 PTPRMP28827 1452 aa15.52■□□□□ 0.08
SSBP3-215ENST00000533946 ABCC1P33527 1531 aa15.52■□□□□ 0.07
SSBP3-215ENST00000533946 ITSN2Q9NZM3 1697 aa15.51■□□□□ 0.07
SSBP3-215ENST00000533946 HNRNPMP52272 730 aaKnown RBP eCLIP15.51■□□□□ 0.071e-6■■■■□ 26.2
SSBP3-215ENST00000533946 RIMS1Q86UR5 1692 aaKnown RBP15.51■□□□□ 0.07
SSBP3-215ENST00000533946 KDM5CP41229 1560 aa15.5■□□□□ 0.07
SSBP3-215ENST00000533946 ABCA6Q8N139 1617 aa15.5■□□□□ 0.07
SSBP3-215ENST00000533946 DIP2CQ9Y2E4 1556 aa15.49■□□□□ 0.07
SSBP3-215ENST00000533946 TIAM1Q13009 1591 aa15.48■□□□□ 0.07
SSBP3-215ENST00000533946 MTUS2Q5JR59 1369 aa15.48■□□□□ 0.07
SSBP3-215ENST00000533946 SYCP2Q9BX26 1530 aa15.48■□□□□ 0.07
SSBP3-215ENST00000533946 ATP10AO60312 1499 aa15.47■□□□□ 0.07
SSBP3-215ENST00000533946 KIDINS220Q9ULH0 1771 aa15.47■□□□□ 0.07
SSBP3-215ENST00000533946 KANK4Q5T7N3 995 aaPredicted RBP15.47■□□□□ 0.07
SSBP3-215ENST00000533946 ZNF518AQ6AHZ1 1483 aa15.46■□□□□ 0.07
SSBP3-215ENST00000533946 MAGI2Q86UL8 1455 aa15.46■□□□□ 0.07
SSBP3-215ENST00000533946 CEBPAP49715 358 aaPredicted RBP15.45■□□□□ 0.06
SSBP3-215ENST00000533946 MYT1LQ9UL68 1186 aa15.44■□□□□ 0.06
SSBP3-215ENST00000533946 CCNB3Q8WWL7 1395 aa15.44■□□□□ 0.06
SSBP3-215ENST00000533946 CFDP1Q9UEE9 299 aaPredicted RBP15.43■□□□□ 0.06
SSBP3-215ENST00000533946 C9orf84Q5VXU9 1444 aa15.43■□□□□ 0.06
SSBP3-215ENST00000533946 VPS8Q8N3P4 1428 aa15.43■□□□□ 0.06
SSBP3-215ENST00000533946 EHBP1L1Q8N3D4 1523 aa15.42■□□□□ 0.06
SSBP3-215ENST00000533946 FER1L4A9Z1Z3 1794 aa15.41■□□□□ 0.06
SSBP3-215ENST00000533946 NCOA2Q15596 1464 aa15.41■□□□□ 0.06
SSBP3-215ENST00000533946 MLH3Q9UHC1 1453 aa15.41■□□□□ 0.06
SSBP3-215ENST00000533946 HSPA2P54652 639 aa15.39■□□□□ 0.05
SSBP3-215ENST00000533946 MBD5Q9P267 1494 aa15.39■□□□□ 0.05
SSBP3-215ENST00000533946 LRRC9Q6ZRR7 1453 aa15.37■□□□□ 0.05
SSBP3-215ENST00000533946 LMTK3Q96Q04 1460 aa15.37■□□□□ 0.05
SSBP3-215ENST00000533946 SUPT6HQ7KZ85 1726 aaKnown RBP15.36■□□□□ 0.05
SSBP3-215ENST00000533946 SPAG9O60271 1321 aaKnown RBP15.36■□□□□ 0.05
SSBP3-215ENST00000533946 INO80Q9ULG1 1556 aaPredicted RBP15.35■□□□□ 0.05
SSBP3-215ENST00000533946 KIAA1107Q9UPP5 1409 aa15.34■□□□□ 0.05
SSBP3-215ENST00000533946 ATP7AQ04656 1500 aa15.33■□□□□ 0.05
SSBP3-215ENST00000533946 REREQ9P2R6 1566 aa15.33■□□□□ 0.05
SSBP3-215ENST00000533946 CAMSAP2Q08AD1 1489 aa15.32■□□□□ 0.04
SSBP3-215ENST00000533946 C3P01024 1663 aa15.3■□□□□ 0.04
SSBP3-215ENST00000533946 AGLP35573 1532 aa15.3■□□□□ 0.04
SSBP3-215ENST00000533946 PLXNC1O60486 1568 aa15.28■□□□□ 0.04
SSBP3-215ENST00000533946 ADGBQ8N7X0 1667 aa15.28■□□□□ 0.04
SSBP3-215ENST00000533946 A2MP01023 1474 aa15.27■□□□□ 0.04
SSBP3-215ENST00000533946 PLEKHH2Q8IVE3 1493 aa15.27■□□□□ 0.04
SSBP3-215ENST00000533946 MAP3K1Q13233 1512 aa15.25■□□□□ 0.03
SSBP3-215ENST00000533946 GGT6Q6P531 493 aa15.24■□□□□ 0.03
SSBP3-215ENST00000533946 ILDR1Q86SU0 546 aaPredicted RBP15.24■□□□□ 0.03
SSBP3-215ENST00000533946 CLTCQ00610 1675 aaKnown RBP15.24■□□□□ 0.03
SSBP3-215ENST00000533946 CCDC141Q6ZP82 1450 aa15.23■□□□□ 0.03
SSBP3-215ENST00000533946 PPARGC1BQ86YN6 1023 aaKnown RBP15.22■□□□□ 0.03
SSBP3-215ENST00000533946 MYOM3Q5VTT5 1437 aa15.22■□□□□ 0.03
SSBP3-215ENST00000533946 PREX1Q8TCU6 1659 aa15.21■□□□□ 0.03
SSBP3-215ENST00000533946 ARHGEF5Q12774 1597 aa15.2■□□□□ 0.02
SSBP3-215ENST00000533946 STRCQ7RTU9 1775 aa15.2■□□□□ 0.02
SSBP3-215ENST00000533946 ZMYM3Q14202 1370 aa15.2■□□□□ 0.02
SSBP3-215ENST00000533946 DHX29Q7Z478 1369 aaKnown RBP15.2■□□□□ 0.02
SSBP3-215ENST00000533946 RTEL1-TNFRSF6BF6WH68 1400 aa15.19■□□□□ 0.02
SSBP3-215ENST00000533946 KIF3BO15066 747 aa15.18■□□□□ 0.02
SSBP3-215ENST00000533946 FBXO31Q5XUX0 539 aaPredicted RBP15.17■□□□□ 0.02
SSBP3-215ENST00000533946 PTPN23Q9H3S7 1636 aa15.16■□□□□ 0.02
SSBP3-215ENST00000533946 ABCC5O15440 1437 aa15.16■□□□□ 0.02
SSBP3-215ENST00000533946 SETD1BQ9UPS6 1966 aaKnown RBP15.15■□□□□ 0.02
SSBP3-215ENST00000533946 MROH2AA6NES4 1674 aa15.15■□□□□ 0.02
SSBP3-215ENST00000533946 ESF1Q9H501 851 aaKnown RBP15.14■□□□□ 0.01
SSBP3-215ENST00000533946 PTPRKQ15262 1439 aa15.14■□□□□ 0.01
SSBP3-215ENST00000533946 UHRF1BP1Q6BDS2 1440 aa15.13■□□□□ 0.01
SSBP3-215ENST00000533946 FGD6Q6ZV73 1430 aa15.13■□□□□ 0.01
SSBP3-215ENST00000533946 MIA2Q96PC5 1412 aa15.13■□□□□ 0.01
SSBP3-215ENST00000533946 CHIC2Q9UKJ5 165 aa15.13■□□□□ 0.01
SSBP3-215ENST00000533946 MAST1Q9Y2H9 1570 aa15.12■□□□□ 0.01
SSBP3-215ENST00000533946 TSPY4P0CV99 314 aa15.12■□□□□ 0.01
SSBP3-215ENST00000533946 TSPY10P0CW01 314 aa15.12■□□□□ 0.01
SSBP3-215ENST00000533946 APLP2Q06481 763 aa15.12■□□□□ 0.01
SSBP3-215ENST00000533946 CNTLNQ9NXG0 1405 aa15.11■□□□□ 0.01
SSBP3-215ENST00000533946 MROH1Q8NDA8 1641 aa15.11■□□□□ 0.01
SSBP3-215ENST00000533946 RRP7BPQ9NSQ0 103 aa15.11■□□□□ 0.01
SSBP3-215ENST00000533946 CROCC2H7BZ55 1655 aa15.1■□□□□ 0.01
SSBP3-215ENST00000533946 TCOF1Q13428 1488 aaKnown RBP15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms