RNA–Protein interactions for RNA: ENST00000533908.5

UBXN1-216, Transcript of UBX domain protein 1, humanhuman

TSL 1 (best)

Gene UBXN1, Length 739 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN1-216ENST00000533908 POGZQ7Z3K3 1410 aa29.8■■■□□ 2.36
UBXN1-216ENST00000533908 EFCAB2Q5VUJ9 269 aa29.8■■■□□ 2.36
UBXN1-216ENST00000533908 LMTK3Q96Q04 1460 aa29.8■■■□□ 2.36
UBXN1-216ENST00000533908 KIF14Q15058 1648 aa29.78■■■□□ 2.36
UBXN1-216ENST00000533908 CDK11AQ9UQ88 783 aaPredicted RBP29.78■■■□□ 2.36
UBXN1-216ENST00000533908 PCF11O94913 1555 aaKnown RBP29.77■■■□□ 2.36
UBXN1-216ENST00000533908 MLECQ14165 292 aa29.76■■■□□ 2.35
UBXN1-216ENST00000533908 PLPPR3Q6T4P5 718 aa29.76■■■□□ 2.35
UBXN1-216ENST00000533908 LRRIQ1Q96JM4 1722 aa29.74■■■□□ 2.35
UBXN1-216ENST00000533908 TROQ12816 1431 aaPredicted RBP29.74■■■□□ 2.35
UBXN1-216ENST00000533908 MYO5CQ9NQX4 1742 aa29.74■■■□□ 2.35
UBXN1-216ENST00000533908 HSPA2P54652 639 aa29.7■■■□□ 2.35
UBXN1-216ENST00000533908 ATP10AO60312 1499 aa29.69■■■□□ 2.34
UBXN1-216ENST00000533908 AFAP1Q8N556 730 aa29.68■■■□□ 2.34
UBXN1-216ENST00000533908 FBXO41Q8TF61 875 aa29.65■■■□□ 2.34
UBXN1-216ENST00000533908 ARHGAP5Q13017 1502 aa29.64■■■□□ 2.34
UBXN1-216ENST00000533908 CLIP1P30622 1438 aa29.62■■■□□ 2.33
UBXN1-216ENST00000533908 C9orf84Q5VXU9 1444 aa29.62■■■□□ 2.33
UBXN1-216ENST00000533908 ARHGEF12Q9NZN5 1544 aa29.61■■■□□ 2.33
UBXN1-216ENST00000533908 FER1L4A9Z1Z3 1794 aa29.6■■■□□ 2.33
UBXN1-216ENST00000533908 CASKIN1Q8WXD9 1431 aa29.6■■■□□ 2.33
UBXN1-216ENST00000533908 ZNF518AQ6AHZ1 1483 aa29.6■■■□□ 2.33
UBXN1-216ENST00000533908 CDC42BPBQ9Y5S2 1711 aa29.59■■■□□ 2.33
UBXN1-216ENST00000533908 KDM5CP41229 1560 aa29.57■■■□□ 2.32
UBXN1-216ENST00000533908 CEBPAP49715 358 aaPredicted RBP29.57■■■□□ 2.32
UBXN1-216ENST00000533908 MYT1LQ9UL68 1186 aa29.52■■■□□ 2.32
UBXN1-216ENST00000533908 TRAPPC8Q9Y2L5 1435 aa29.52■■■□□ 2.32
UBXN1-216ENST00000533908 CCDC18Q5T9S5 1454 aa29.51■■■□□ 2.31
UBXN1-216ENST00000533908 DIP2CQ9Y2E4 1556 aa29.5■■■□□ 2.31
UBXN1-216ENST00000533908 PREX2Q70Z35 1606 aa29.49■■■□□ 2.31
UBXN1-216ENST00000533908 MLH3Q9UHC1 1453 aa29.48■■■□□ 2.31
UBXN1-216ENST00000533908 ABCC1P33527 1531 aa29.45■■■□□ 2.31
UBXN1-216ENST00000533908 ABCA6Q8N139 1617 aa29.45■■■□□ 2.31
UBXN1-216ENST00000533908 REREQ9P2R6 1566 aa29.43■■■□□ 2.3
UBXN1-216ENST00000533908 FYCO1Q9BQS8 1478 aa29.42■■■□□ 2.3
UBXN1-216ENST00000533908 CDC42BPAQ5VT25 1732 aa29.42■■■□□ 2.3
UBXN1-216ENST00000533908 ITSN2Q9NZM3 1697 aa29.4■■■□□ 2.3
UBXN1-216ENST00000533908 PREX1Q8TCU6 1659 aa29.37■■■□□ 2.29
UBXN1-216ENST00000533908 ZNF777Q9ULD5 760 aaPredicted RBP29.37■■■□□ 2.29
UBXN1-216ENST00000533908 KIDINS220Q9ULH0 1771 aa29.36■■■□□ 2.29
UBXN1-216ENST00000533908 AGLP35573 1532 aa29.36■■■□□ 2.29
UBXN1-216ENST00000533908 GPATCH8Q9UKJ3 1502 aaKnown RBP29.35■■■□□ 2.29
UBXN1-216ENST00000533908 CERKQ8TCT0 537 aa29.34■■■□□ 2.29
UBXN1-216ENST00000533908 SAMD9LQ8IVG5 1584 aa29.32■■■□□ 2.28
UBXN1-216ENST00000533908 HNRNPMP52272 730 aaKnown RBP eCLIP29.32■■■□□ 2.28
UBXN1-216ENST00000533908 C3P01024 1663 aa29.29■■■□□ 2.28
UBXN1-216ENST00000533908 SETD1BQ9UPS6 1966 aaKnown RBP29.29■■■□□ 2.28
UBXN1-216ENST00000533908 STRCQ7RTU9 1775 aa29.29■■■□□ 2.28
UBXN1-216ENST00000533908 UHRF1BP1Q6BDS2 1440 aa29.28■■■□□ 2.28
UBXN1-216ENST00000533908 SYCP2Q9BX26 1530 aa29.26■■■□□ 2.27
UBXN1-216ENST00000533908 ESF1Q9H501 851 aaKnown RBP29.25■■■□□ 2.27
UBXN1-216ENST00000533908 SPAG9O60271 1321 aaKnown RBP29.24■■■□□ 2.27
UBXN1-216ENST00000533908 CFDP1Q9UEE9 299 aaPredicted RBP29.24■■■□□ 2.27
UBXN1-216ENST00000533908 KIAA1107Q9UPP5 1409 aa29.2■■■□□ 2.27
UBXN1-216ENST00000533908 DMRT2Q9Y5R5 561 aa29.2■■■□□ 2.26
UBXN1-216ENST00000533908 CCNB3Q8WWL7 1395 aa29.19■■■□□ 2.26
UBXN1-216ENST00000533908 MTUS2Q5JR59 1369 aa29.17■■■□□ 2.26
UBXN1-216ENST00000533908 CNTLNQ9NXG0 1405 aa29.17■■■□□ 2.26
UBXN1-216ENST00000533908 ZNF644Q9H582 1327 aaPredicted RBP29.17■■■□□ 2.26
UBXN1-216ENST00000533908 ATP7AQ04656 1500 aa29.15■■■□□ 2.26
UBXN1-216ENST00000533908 PLEKHH2Q8IVE3 1493 aa29.14■■■□□ 2.26
UBXN1-216ENST00000533908 SUPT6HQ7KZ85 1726 aaKnown RBP29.14■■■□□ 2.25
UBXN1-216ENST00000533908 ZMYM3Q14202 1370 aa29.13■■■□□ 2.25
UBXN1-216ENST00000533908 INO80Q9ULG1 1556 aaPredicted RBP29.12■■■□□ 2.25
UBXN1-216ENST00000533908 PTPRTO14522 1441 aa29.1■■■□□ 2.25
UBXN1-216ENST00000533908 A2MP01023 1474 aa29.1■■■□□ 2.25
UBXN1-216ENST00000533908 PLXNC1O60486 1568 aa29.09■■■□□ 2.25
UBXN1-216ENST00000533908 TIAM1Q13009 1591 aa29.08■■■□□ 2.25
UBXN1-216ENST00000533908 MROH2AA6NES4 1674 aa29.07■■■□□ 2.24
UBXN1-216ENST00000533908 MBD5Q9P267 1494 aa29.06■■■□□ 2.24
UBXN1-216ENST00000533908 NPATQ14207 1427 aa29.06■■■□□ 2.24
UBXN1-216ENST00000533908 GGT6Q6P531 493 aa29.05■■■□□ 2.24
UBXN1-216ENST00000533908 NCOA1Q15788 1441 aa29.04■■■□□ 2.24
UBXN1-216ENST00000533908 CEP162Q5TB80 1403 aa29.04■■■□□ 2.24
UBXN1-216ENST00000533908 CLTCQ00610 1675 aaKnown RBP29.02■■■□□ 2.24
UBXN1-216ENST00000533908 EHBP1L1Q8N3D4 1523 aa29.02■■■□□ 2.24
UBXN1-216ENST00000533908 CAMSAP1Q5T5Y3 1602 aa28.98■■■□□ 2.23
UBXN1-216ENST00000533908 LTBP4Q8N2S1 1624 aa28.98■■■□□ 2.23
UBXN1-216ENST00000533908 PTPRKQ15262 1439 aa28.98■■■□□ 2.23
UBXN1-216ENST00000533908 NCKAP5LQ9HCH0 1330 aa28.96■■■□□ 2.23
UBXN1-216ENST00000533908 ADGBQ8N7X0 1667 aa28.96■■■□□ 2.23
UBXN1-216ENST00000533908 RTEL1-TNFRSF6BF6WH68 1400 aa28.94■■■□□ 2.22
UBXN1-216ENST00000533908 PPP6R1Q9UPN7 881 aa28.94■■■□□ 2.22
UBXN1-216ENST00000533908 DHX29Q7Z478 1369 aaKnown RBP28.92■■■□□ 2.22
UBXN1-216ENST00000533908 NCOA2Q15596 1464 aa28.91■■■□□ 2.22
UBXN1-216ENST00000533908 MYO3AQ8NEV4 1616 aa28.88■■■□□ 2.21
UBXN1-216ENST00000533908 LOC105371045A0A1W2PR82 267 aa28.87■■■□□ 2.21
UBXN1-216ENST00000533908 KIF3BO15066 747 aa28.86■■■□□ 2.21
UBXN1-216ENST00000533908 ZNF142P52746 1687 aaPredicted RBP28.86■■■□□ 2.21
UBXN1-216ENST00000533908 CAMSAP2Q08AD1 1489 aa28.85■■■□□ 2.21
UBXN1-216ENST00000533908 CEP170BQ9Y4F5 1589 aaPredicted RBP28.85■■■□□ 2.21
UBXN1-216ENST00000533908 ZNF335Q9H4Z2 1342 aaPredicted RBP28.84■■■□□ 2.21
UBXN1-216ENST00000533908 CCDC141Q6ZP82 1450 aa28.84■■■□□ 2.21
UBXN1-216ENST00000533908 FBXO31Q5XUX0 539 aaPredicted RBP28.83■■■□□ 2.21
UBXN1-216ENST00000533908 PKD2Q13563 968 aa28.82■■■□□ 2.2
UBXN1-216ENST00000533908 PLA2R1Q13018 1463 aa28.82■■■□□ 2.2
UBXN1-216ENST00000533908 TCOF1Q13428 1488 aaKnown RBP28.82■■■□□ 2.2
UBXN1-216ENST00000533908 RSPH4AQ5TD94 716 aa28.81■■■□□ 2.2
UBXN1-216ENST00000533908 IQSEC2Q5JU85 1478 aa28.78■■■□□ 2.2
UBXN1-216ENST00000533908 A2ML1A8K2U0 1454 aa28.77■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms