RNA–Protein interactions for RNA: ENST00000533244.5

CCS-208, Transcript of copper chaperone for superoxide dismutase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCS, Length 1,430 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCS-208ENST00000533244 ARHGAP5Q13017 1502 aa32.5■■■□□ 2.79
CCS-208ENST00000533244 CDC42BPAQ5VT25 1732 aa32.49■■■□□ 2.79
CCS-208ENST00000533244 RAPGEF3O95398 923 aa32.49■■■□□ 2.79
CCS-208ENST00000533244 ADGRL1O94910 1474 aa32.48■■■□□ 2.79
CCS-208ENST00000533244 MAP3K1Q13233 1512 aa32.46■■■□□ 2.79
CCS-208ENST00000533244 GPATCH8Q9UKJ3 1502 aaKnown RBP32.44■■■□□ 2.78
CCS-208ENST00000533244 SCAPERQ9BY12 1400 aa32.43■■■□□ 2.78
CCS-208ENST00000533244 POGZQ7Z3K3 1410 aa32.41■■■□□ 2.78
CCS-208ENST00000533244 ZMYM4Q5VZL5 1548 aa32.41■■■□□ 2.78
CCS-208ENST00000533244 LRRC9Q6ZRR7 1453 aa32.37■■■□□ 2.77
CCS-208ENST00000533244 ABCC1P33527 1531 aa32.36■■■□□ 2.77
CCS-208ENST00000533244 CCNB3Q8WWL7 1395 aa32.35■■■□□ 2.77
CCS-208ENST00000533244 SUPT6HQ7KZ85 1726 aaKnown RBP32.35■■■□□ 2.77
CCS-208ENST00000533244 ARHGEF40Q8TER5 1519 aa32.32■■■□□ 2.77
CCS-208ENST00000533244 NCOA2Q15596 1464 aa32.31■■■□□ 2.76
CCS-208ENST00000533244 SAMD9LQ8IVG5 1584 aa32.31■■■□□ 2.76
CCS-208ENST00000533244 ZNF518AQ6AHZ1 1483 aa32.31■■■□□ 2.76
CCS-208ENST00000533244 MAGI2Q86UL8 1455 aa32.31■■■□□ 2.76
CCS-208ENST00000533244 ARHGEF12Q9NZN5 1544 aa32.3■■■□□ 2.76
CCS-208ENST00000533244 KDM5CP41229 1560 aa32.3■■■□□ 2.76
CCS-208ENST00000533244 ITSN2Q9NZM3 1697 aa32.3■■■□□ 2.76
CCS-208ENST00000533244 KDM4FA0A1W2PPD8 638 aa32.26■■■□□ 2.76
CCS-208ENST00000533244 ZFYVE16Q7Z3T8 1539 aa32.26■■■□□ 2.75
CCS-208ENST00000533244 KANK4Q5T7N3 995 aaPredicted RBP32.26■■■□□ 2.75
CCS-208ENST00000533244 CFDP1Q9UEE9 299 aaPredicted RBP32.25■■■□□ 2.75
CCS-208ENST00000533244 YEATS2Q9ULM3 1422 aa32.23■■■□□ 2.75
CCS-208ENST00000533244 TRAPPC8Q9Y2L5 1435 aa32.22■■■□□ 2.75
CCS-208ENST00000533244 KIAA1107Q9UPP5 1409 aa32.21■■■□□ 2.75
CCS-208ENST00000533244 PLEKHH2Q8IVE3 1493 aa32.21■■■□□ 2.75
CCS-208ENST00000533244 SYCP2Q9BX26 1530 aa32.2■■■□□ 2.75
CCS-208ENST00000533244 AFAP1Q8N556 730 aa32.2■■■□□ 2.75
CCS-208ENST00000533244 ZNF777Q9ULD5 760 aaPredicted RBP32.18■■■□□ 2.74
CCS-208ENST00000533244 HECW2Q9P2P5 1572 aa32.17■■■□□ 2.74
CCS-208ENST00000533244 MLH3Q9UHC1 1453 aa32.17■■■□□ 2.74
CCS-208ENST00000533244 APLP2Q06481 763 aa32.16■■■□□ 2.74
CCS-208ENST00000533244 AEBP2Q6ZN18 517 aaPredicted RBP32.1■■■□□ 2.73
CCS-208ENST00000533244 SIGLEC1Q9BZZ2 1709 aa32.1■■■□□ 2.73
CCS-208ENST00000533244 ZNF644Q9H582 1327 aaPredicted RBP32.1■■■□□ 2.73
CCS-208ENST00000533244 ATP10AO60312 1499 aa32.1■■■□□ 2.73
CCS-208ENST00000533244 MBD5Q9P267 1494 aa32.09■■■□□ 2.73
CCS-208ENST00000533244 DIP2CQ9Y2E4 1556 aa32.09■■■□□ 2.73
CCS-208ENST00000533244 HNRNPMP52272 730 aaKnown RBP eCLIP32.09■■■□□ 2.73
CCS-208ENST00000533244 KIDINS220Q9ULH0 1771 aa32.07■■■□□ 2.72
CCS-208ENST00000533244 ABCA6Q8N139 1617 aa32.07■■■□□ 2.72
CCS-208ENST00000533244 CAMSAP2Q08AD1 1489 aa32.07■■■□□ 2.72
CCS-208ENST00000533244 C9orf84Q5VXU9 1444 aa32.06■■■□□ 2.72
CCS-208ENST00000533244 BCORL1Q5H9F3 1711 aa32.06■■■□□ 2.72
CCS-208ENST00000533244 MYOM3Q5VTT5 1437 aa32.05■■■□□ 2.72
CCS-208ENST00000533244 REREQ9P2R6 1566 aa32.04■■■□□ 2.72
CCS-208ENST00000533244 ADAMTSL3P82987 1691 aa32.04■■■□□ 2.72
CCS-208ENST00000533244 MIA2Q96PC5 1412 aa32.02■■■□□ 2.72
CCS-208ENST00000533244 INO80Q9ULG1 1556 aaPredicted RBP32.02■■■□□ 2.72
CCS-208ENST00000533244 SPAG9O60271 1321 aaKnown RBP31.99■■■□□ 2.71
CCS-208ENST00000533244 ARID4BQ4LE39 1312 aaPredicted RBP31.99■■■□□ 2.71
CCS-208ENST00000533244 ATP7AQ04656 1500 aa31.98■■■□□ 2.71
CCS-208ENST00000533244 ARHGEF5Q12774 1597 aa31.96■■■□□ 2.71
CCS-208ENST00000533244 MYT1LQ9UL68 1186 aa31.95■■■□□ 2.71
CCS-208ENST00000533244 CCDC141Q6ZP82 1450 aa31.95■■■□□ 2.71
CCS-208ENST00000533244 RSPH4AQ5TD94 716 aa31.92■■■□□ 2.7
CCS-208ENST00000533244 MADDQ8WXG6 1647 aa31.91■■■□□ 2.7
CCS-208ENST00000533244 AGLP35573 1532 aa31.91■■■□□ 2.7
CCS-208ENST00000533244 RTEL1-TNFRSF6BF6WH68 1400 aa31.9■■■□□ 2.7
CCS-208ENST00000533244 FGD6Q6ZV73 1430 aa31.86■■■□□ 2.69
CCS-208ENST00000533244 PTPN23Q9H3S7 1636 aa31.85■■■□□ 2.69
CCS-208ENST00000533244 PLXNC1O60486 1568 aa31.85■■■□□ 2.69
CCS-208ENST00000533244 PTPRMP28827 1452 aa31.83■■■□□ 2.69
CCS-208ENST00000533244 TCOF1Q13428 1488 aaKnown RBP31.83■■■□□ 2.69
CCS-208ENST00000533244 ADGBQ8N7X0 1667 aa31.82■■■□□ 2.68
CCS-208ENST00000533244 A2MP01023 1474 aa31.81■■■□□ 2.68
CCS-208ENST00000533244 MAST1Q9Y2H9 1570 aa31.8■■■□□ 2.68
CCS-208ENST00000533244 RIMS1Q86UR5 1692 aaKnown RBP31.8■■■□□ 2.68
CCS-208ENST00000533244 FER1L4A9Z1Z3 1794 aa31.79■■■□□ 2.68
CCS-208ENST00000533244 MLECQ14165 292 aa31.78■■■□□ 2.68
CCS-208ENST00000533244 TSPY4P0CV99 314 aa31.74■■■□□ 2.67
CCS-208ENST00000533244 TSPY10P0CW01 314 aa31.74■■■□□ 2.67
CCS-208ENST00000533244 CROCC2H7BZ55 1655 aa31.72■■■□□ 2.67
CCS-208ENST00000533244 DNMT1P26358 1616 aaKnown RBP31.71■■■□□ 2.67
CCS-208ENST00000533244 SHANK2Q9UPX8 1470 aa31.7■■■□□ 2.67
CCS-208ENST00000533244 ABCC5O15440 1437 aa31.7■■■□□ 2.67
CCS-208ENST00000533244 DHX29Q7Z478 1369 aaKnown RBP31.7■■■□□ 2.67
CCS-208ENST00000533244 DAPK1P53355 1430 aa31.67■■■□□ 2.66
CCS-208ENST00000533244 PPARGC1BQ86YN6 1023 aaKnown RBP31.58■■■□□ 2.65
CCS-208ENST00000533244 CNTLNQ9NXG0 1405 aa31.58■■■□□ 2.65
CCS-208ENST00000533244 MROH2AA6NES4 1674 aa31.55■■■□□ 2.64
CCS-208ENST00000533244 DUOX2Q9NRD8 1548 aa31.53■■■□□ 2.64
CCS-208ENST00000533244 FAM50AQ14320 339 aaKnown RBP31.53■■■□□ 2.64
CCS-208ENST00000533244 EIF2AK4Q9P2K8 1649 aaKnown RBP31.53■■■□□ 2.64
CCS-208ENST00000533244 C3P01024 1663 aa31.53■■■□□ 2.64
CCS-208ENST00000533244 PPP6R1Q9UPN7 881 aa31.52■■■□□ 2.64
CCS-208ENST00000533244 KIF3BO15066 747 aa31.5■■■□□ 2.63
CCS-208ENST00000533244 GGT6Q6P531 493 aa31.5■■■□□ 2.63
CCS-208ENST00000533244 KIF15Q9NS87 1388 aa31.5■■■□□ 2.63
CCS-208ENST00000533244 ADGRL2O95490 1459 aa31.5■■■□□ 2.63
CCS-208ENST00000533244 ESF1Q9H501 851 aaKnown RBP31.49■■■□□ 2.63
CCS-208ENST00000533244 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.49■■■□□ 2.63
CCS-208ENST00000533244 CLTCQ00610 1675 aaKnown RBP31.49■■■□□ 2.63
CCS-208ENST00000533244 RNF17Q9BXT8 1623 aaKnown RBP31.49■■■□□ 2.63
CCS-208ENST00000533244 FAM135AQ9P2D6 1515 aa31.49■■■□□ 2.63
CCS-208ENST00000533244 CEBPAP49715 358 aaPredicted RBP31.48■■■□□ 2.63
CCS-208ENST00000533244 NCOA1Q15788 1441 aa31.46■■■□□ 2.63
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms