RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 NCOA2Q15596 1464 aa32.1■■■□□ 2.73
VPS28-212ENST00000530836 GPATCH8Q9UKJ3 1502 aaKnown RBP32.1■■■□□ 2.73
VPS28-212ENST00000530836 MYO5CQ9NQX4 1742 aa32.07■■■□□ 2.72
VPS28-212ENST00000530836 AKNAQ7Z591 1439 aa32.06■■■□□ 2.72
VPS28-212ENST00000530836 COL17A1Q9UMD9 1497 aaPredicted RBP32.06■■■□□ 2.72
VPS28-212ENST00000530836 ARHGAP5Q13017 1502 aa32.05■■■□□ 2.72
VPS28-212ENST00000530836 CFDP1Q9UEE9 299 aaPredicted RBP32.03■■■□□ 2.72
VPS28-212ENST00000530836 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP32.02■■■□□ 2.723e-6■■□□□ 12.6
VPS28-212ENST00000530836 KDM6BO15054 1643 aa32.01■■■□□ 2.72
VPS28-212ENST00000530836 PREX2Q70Z35 1606 aa32.01■■■□□ 2.71
VPS28-212ENST00000530836 MYOM3Q5VTT5 1437 aa32.01■■■□□ 2.71
VPS28-212ENST00000530836 CFAP74Q9C0B2 1584 aa31.99■■■□□ 2.71
VPS28-212ENST00000530836 CDC42BPAQ5VT25 1732 aa31.99■■■□□ 2.71
VPS28-212ENST00000530836 CDC42BPBQ9Y5S2 1711 aa31.98■■■□□ 2.71
VPS28-212ENST00000530836 FGD6Q6ZV73 1430 aa31.97■■■□□ 2.71
VPS28-212ENST00000530836 ZNF777Q9ULD5 760 aaPredicted RBP31.96■■■□□ 2.71
VPS28-212ENST00000530836 ADGRL1O94910 1474 aa31.94■■■□□ 2.7
VPS28-212ENST00000530836 SCAPERQ9BY12 1400 aa31.94■■■□□ 2.7
VPS28-212ENST00000530836 RAPGEF3O95398 923 aa31.93■■■□□ 2.7
VPS28-212ENST00000530836 DENND4BO75064 1496 aaPredicted RBP31.91■■■□□ 2.7
VPS28-212ENST00000530836 MIA2Q96PC5 1412 aa31.91■■■□□ 2.7
VPS28-212ENST00000530836 ITSN2Q9NZM3 1697 aa31.87■■■□□ 2.69
VPS28-212ENST00000530836 ZNF644Q9H582 1327 aaPredicted RBP31.87■■■□□ 2.69
VPS28-212ENST00000530836 FAM50AQ14320 339 aaKnown RBP31.86■■■□□ 2.69
VPS28-212ENST00000530836 KIAA1107Q9UPP5 1409 aa31.84■■■□□ 2.69
VPS28-212ENST00000530836 SAMD9LQ8IVG5 1584 aa31.83■■■□□ 2.69
VPS28-212ENST00000530836 ARHGEF12Q9NZN5 1544 aa31.83■■■□□ 2.69
VPS28-212ENST00000530836 PLEKHH2Q8IVE3 1493 aa31.82■■■□□ 2.68
VPS28-212ENST00000530836 ABCC1P33527 1531 aa31.82■■■□□ 2.68
VPS28-212ENST00000530836 HNRNPMP52272 730 aaKnown RBP eCLIP31.82■■■□□ 2.68
VPS28-212ENST00000530836 POGZQ7Z3K3 1410 aa31.82■■■□□ 2.68
VPS28-212ENST00000530836 AFAP1Q8N556 730 aa31.81■■■□□ 2.68
VPS28-212ENST00000530836 TCOF1Q13428 1488 aaKnown RBP31.8■■■□□ 2.68
VPS28-212ENST00000530836 PTPN23Q9H3S7 1636 aa31.79■■■□□ 2.68
VPS28-212ENST00000530836 FRMPD1Q5SYB0 1578 aa31.77■■■□□ 2.68
VPS28-212ENST00000530836 TRAPPC8Q9Y2L5 1435 aa31.77■■■□□ 2.68
VPS28-212ENST00000530836 ZNF518AQ6AHZ1 1483 aa31.76■■■□□ 2.68
VPS28-212ENST00000530836 SYCP2Q9BX26 1530 aa31.74■■■□□ 2.67
VPS28-212ENST00000530836 CAMSAP2Q08AD1 1489 aa31.74■■■□□ 2.67
VPS28-212ENST00000530836 RICTORQ6R327 1708 aa31.74■■■□□ 2.67
VPS28-212ENST00000530836 MBD5Q9P267 1494 aa31.73■■■□□ 2.67
VPS28-212ENST00000530836 RSPH4AQ5TD94 716 aa31.71■■■□□ 2.67
VPS28-212ENST00000530836 ITGAEP38570 1179 aa31.7■■■□□ 2.66
VPS28-212ENST00000530836 HRCP23327 699 aa31.69■■■□□ 2.66
VPS28-212ENST00000530836 ZMYM4Q5VZL5 1548 aa31.68■■■□□ 2.66
VPS28-212ENST00000530836 MAGI2Q86UL8 1455 aa31.67■■■□□ 2.66
VPS28-212ENST00000530836 KDM5CP41229 1560 aa31.66■■■□□ 2.66
VPS28-212ENST00000530836 SPAG9O60271 1321 aaKnown RBP31.63■■■□□ 2.65
VPS28-212ENST00000530836 MLH3Q9UHC1 1453 aa31.63■■■□□ 2.65
VPS28-212ENST00000530836 MYT1LQ9UL68 1186 aa31.62■■■□□ 2.65
VPS28-212ENST00000530836 YEATS2Q9ULM3 1422 aa31.6■■■□□ 2.65
VPS28-212ENST00000530836 ZEB1P37275 1124 aaPredicted RBP31.6■■■□□ 2.65
VPS28-212ENST00000530836 CCDC141Q6ZP82 1450 aa31.59■■■□□ 2.65
VPS28-212ENST00000530836 ARHGEF5Q12774 1597 aa31.57■■■□□ 2.65
VPS28-212ENST00000530836 TSPY4P0CV99 314 aa31.57■■■□□ 2.64
VPS28-212ENST00000530836 TSPY10P0CW01 314 aa31.57■■■□□ 2.64
VPS28-212ENST00000530836 ZFYVE16Q7Z3T8 1539 aa31.57■■■□□ 2.64
VPS28-212ENST00000530836 CCER1Q8TC90 406 aaPredicted RBP31.57■■■□□ 2.64
VPS28-212ENST00000530836 SETD5Q9C0A6 1442 aa31.55■■■□□ 2.64
VPS28-212ENST00000530836 HECW2Q9P2P5 1572 aa31.54■■■□□ 2.64
VPS28-212ENST00000530836 ARHGEF40Q8TER5 1519 aa31.53■■■□□ 2.64
VPS28-212ENST00000530836 RTEL1-TNFRSF6BF6WH68 1400 aa31.52■■■□□ 2.64
VPS28-212ENST00000530836 ABCC5O15440 1437 aa31.51■■■□□ 2.63
VPS28-212ENST00000530836 PTPRKQ15262 1439 aa31.51■■■□□ 2.63
VPS28-212ENST00000530836 ATP10AO60312 1499 aa31.5■■■□□ 2.63
VPS28-212ENST00000530836 DNMT1P26358 1616 aaKnown RBP31.5■■■□□ 2.63
VPS28-212ENST00000530836 HFM1A2PYH4 1435 aa31.48■■■□□ 2.63
VPS28-212ENST00000530836 DAPK1P53355 1430 aa31.48■■■□□ 2.63
VPS28-212ENST00000530836 ATP7AQ04656 1500 aa31.47■■■□□ 2.63
VPS28-212ENST00000530836 KIDINS220Q9ULH0 1771 aa31.47■■■□□ 2.63
VPS28-212ENST00000530836 INO80Q9ULG1 1556 aaPredicted RBP31.45■■■□□ 2.63
VPS28-212ENST00000530836 RAB3GAP2Q9H2M9 1393 aa31.45■■■□□ 2.63
VPS28-212ENST00000530836 C9orf84Q5VXU9 1444 aa31.44■■■□□ 2.62
VPS28-212ENST00000530836 DIP2CQ9Y2E4 1556 aa31.43■■■□□ 2.62
VPS28-212ENST00000530836 ROCK1Q13464 1354 aa31.42■■■□□ 2.62
VPS28-212ENST00000530836 ABCA6Q8N139 1617 aa31.42■■■□□ 2.62
VPS28-212ENST00000530836 ARID4BQ4LE39 1312 aaPredicted RBP31.4■■■□□ 2.62
VPS28-212ENST00000530836 SHANK2Q9UPX8 1470 aa31.4■■■□□ 2.62
VPS28-212ENST00000530836 MAST1Q9Y2H9 1570 aa31.39■■■□□ 2.62
VPS28-212ENST00000530836 CHIC2Q9UKJ5 165 aa31.37■■■□□ 2.61
VPS28-212ENST00000530836 NAIPQ13075 1403 aa31.37■■■□□ 2.61
VPS28-212ENST00000530836 CLSPNQ9HAW4 1339 aa31.35■■■□□ 2.61
VPS28-212ENST00000530836 ACIN1Q9UKV3 1341 aaKnown RBP31.35■■■□□ 2.61
VPS28-212ENST00000530836 REREQ9P2R6 1566 aa31.35■■■□□ 2.61
VPS28-212ENST00000530836 A2MP01023 1474 aa31.34■■■□□ 2.61
VPS28-212ENST00000530836 DHX29Q7Z478 1369 aaKnown RBP31.33■■■□□ 2.61
VPS28-212ENST00000530836 CROCC2H7BZ55 1655 aa31.31■■■□□ 2.6
VPS28-212ENST00000530836 GCC2Q8IWJ2 1684 aa31.31■■■□□ 2.6
VPS28-212ENST00000530836 DHX57Q6P158 1386 aaKnown RBP31.31■■■□□ 2.6
VPS28-212ENST00000530836 ANKRD30AQ9BXX3 1397 aa31.29■■■□□ 2.6
VPS28-212ENST00000530836 RRP7BPQ9NSQ0 103 aa31.29■■■□□ 2.6
VPS28-212ENST00000530836 ADGRL2O95490 1459 aa31.29■■■□□ 2.6
VPS28-212ENST00000530836 AGLP35573 1532 aa31.28■■■□□ 2.6
VPS28-212ENST00000530836 SIGLEC1Q9BZZ2 1709 aa31.28■■■□□ 2.6
VPS28-212ENST00000530836 NCOA1Q15788 1441 aa31.28■■■□□ 2.6
VPS28-212ENST00000530836 KDM4FA0A1W2PPD8 638 aa31.27■■■□□ 2.6
VPS28-212ENST00000530836 ADGBQ8N7X0 1667 aa31.26■■■□□ 2.59
VPS28-212ENST00000530836 PLXNC1O60486 1568 aa31.26■■■□□ 2.59
VPS28-212ENST00000530836 KIF15Q9NS87 1388 aa31.26■■■□□ 2.59
VPS28-212ENST00000530836 MLECQ14165 292 aa31.24■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms