RNA–Protein interactions for RNA: ENST00000529542.1

HIF3A-213, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 5

Gene HIF3A, Length 1,031 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-213ENST00000529542 CLIP1P30622 1438 aa23.5■■□□□ 1.35
HIF3A-213ENST00000529542 YEATS2Q9ULM3 1422 aa23.5■■□□□ 1.35
HIF3A-213ENST00000529542 TROQ12816 1431 aaPredicted RBP23.5■■□□□ 1.35
HIF3A-213ENST00000529542 PCF11O94913 1555 aaKnown RBP23.49■■□□□ 1.35
HIF3A-213ENST00000529542 ATP10AO60312 1499 aa23.46■■□□□ 1.35
HIF3A-213ENST00000529542 KIF14Q15058 1648 aa23.46■■□□□ 1.35
HIF3A-213ENST00000529542 RIMS1Q86UR5 1692 aaKnown RBP23.46■■□□□ 1.35
HIF3A-213ENST00000529542 LMTK3Q96Q04 1460 aa23.46■■□□□ 1.35
HIF3A-213ENST00000529542 MYO5CQ9NQX4 1742 aa23.46■■□□□ 1.35
HIF3A-213ENST00000529542 FBXO41Q8TF61 875 aa23.44■■□□□ 1.34
HIF3A-213ENST00000529542 ZNF518AQ6AHZ1 1483 aa23.43■■□□□ 1.34
HIF3A-213ENST00000529542 C9orf84Q5VXU9 1444 aa23.42■■□□□ 1.34
HIF3A-213ENST00000529542 ARHGAP5Q13017 1502 aa23.39■■□□□ 1.34
HIF3A-213ENST00000529542 CCDC18Q5T9S5 1454 aa23.39■■□□□ 1.34
HIF3A-213ENST00000529542 MLECQ14165 292 aa23.39■■□□□ 1.33
HIF3A-213ENST00000529542 CASKIN1Q8WXD9 1431 aa23.38■■□□□ 1.33
HIF3A-213ENST00000529542 SIGLEC1Q9BZZ2 1709 aa23.36■■□□□ 1.33
HIF3A-213ENST00000529542 ARHGEF12Q9NZN5 1544 aa23.35■■□□□ 1.33
HIF3A-213ENST00000529542 AFAP1Q8N556 730 aa23.35■■□□□ 1.33
HIF3A-213ENST00000529542 KDM5CP41229 1560 aa23.35■■□□□ 1.33
HIF3A-213ENST00000529542 FER1L4A9Z1Z3 1794 aa23.33■■□□□ 1.33
HIF3A-213ENST00000529542 PLPPR3Q6T4P5 718 aa23.32■■□□□ 1.32
HIF3A-213ENST00000529542 MYT1LQ9UL68 1186 aa23.32■■□□□ 1.32
HIF3A-213ENST00000529542 HSPA2P54652 639 aa23.31■■□□□ 1.32
HIF3A-213ENST00000529542 MLH3Q9UHC1 1453 aa23.3■■□□□ 1.32
HIF3A-213ENST00000529542 LRRIQ1Q96JM4 1722 aa23.3■■□□□ 1.32
HIF3A-213ENST00000529542 REREQ9P2R6 1566 aa23.27■■□□□ 1.32
HIF3A-213ENST00000529542 FYCO1Q9BQS8 1478 aa23.27■■□□□ 1.32
HIF3A-213ENST00000529542 CDC42BPBQ9Y5S2 1711 aa23.27■■□□□ 1.32
HIF3A-213ENST00000529542 PREX2Q70Z35 1606 aa23.26■■□□□ 1.31
HIF3A-213ENST00000529542 DIP2CQ9Y2E4 1556 aa23.23■■□□□ 1.31
HIF3A-213ENST00000529542 ABCC1P33527 1531 aa23.23■■□□□ 1.31
HIF3A-213ENST00000529542 TRAPPC8Q9Y2L5 1435 aa23.22■■□□□ 1.31
HIF3A-213ENST00000529542 AGLP35573 1532 aa23.22■■□□□ 1.31
HIF3A-213ENST00000529542 ESF1Q9H501 851 aaKnown RBP23.21■■□□□ 1.31
HIF3A-213ENST00000529542 SETD1BQ9UPS6 1966 aaKnown RBP23.21■■□□□ 1.31
HIF3A-213ENST00000529542 CEBPAP49715 358 aaPredicted RBP23.2■■□□□ 1.3
HIF3A-213ENST00000529542 DMRT2Q9Y5R5 561 aa23.2■■□□□ 1.3
HIF3A-213ENST00000529542 PREX1Q8TCU6 1659 aa23.19■■□□□ 1.3
HIF3A-213ENST00000529542 UHRF1BP1Q6BDS2 1440 aa23.16■■□□□ 1.3
HIF3A-213ENST00000529542 ITSN2Q9NZM3 1697 aa23.16■■□□□ 1.3
HIF3A-213ENST00000529542 ABCA6Q8N139 1617 aa23.16■■□□□ 1.3
HIF3A-213ENST00000529542 CDC42BPAQ5VT25 1732 aa23.15■■□□□ 1.3
HIF3A-213ENST00000529542 CERKQ8TCT0 537 aa23.14■■□□□ 1.29
HIF3A-213ENST00000529542 CNTLNQ9NXG0 1405 aa23.14■■□□□ 1.29
HIF3A-213ENST00000529542 GPATCH8Q9UKJ3 1502 aaKnown RBP23.13■■□□□ 1.29
HIF3A-213ENST00000529542 ZNF777Q9ULD5 760 aaPredicted RBP23.13■■□□□ 1.29
HIF3A-213ENST00000529542 PLEKHH2Q8IVE3 1493 aa23.12■■□□□ 1.29
HIF3A-213ENST00000529542 KIAA1107Q9UPP5 1409 aa23.12■■□□□ 1.29
HIF3A-213ENST00000529542 KIDINS220Q9ULH0 1771 aa23.12■■□□□ 1.29
HIF3A-213ENST00000529542 SPAG9O60271 1321 aaKnown RBP23.1■■□□□ 1.29
HIF3A-213ENST00000529542 CFDP1Q9UEE9 299 aaPredicted RBP23.1■■□□□ 1.29
HIF3A-213ENST00000529542 CCNB3Q8WWL7 1395 aa23.09■■□□□ 1.29
HIF3A-213ENST00000529542 SAMD9LQ8IVG5 1584 aa23.09■■□□□ 1.29
HIF3A-213ENST00000529542 MTUS2Q5JR59 1369 aa23.08■■□□□ 1.29
HIF3A-213ENST00000529542 HNRNPMP52272 730 aaKnown RBP eCLIP23.07■■□□□ 1.28
HIF3A-213ENST00000529542 SYCP2Q9BX26 1530 aa23.05■■□□□ 1.28
HIF3A-213ENST00000529542 C3P01024 1663 aa23.05■■□□□ 1.28
HIF3A-213ENST00000529542 PTPRTO14522 1441 aa23.02■■□□□ 1.28
HIF3A-213ENST00000529542 NPATQ14207 1427 aa23.02■■□□□ 1.28
HIF3A-213ENST00000529542 STRCQ7RTU9 1775 aa23.01■■□□□ 1.27
HIF3A-213ENST00000529542 ATP7AQ04656 1500 aa23■■□□□ 1.27
HIF3A-213ENST00000529542 PPP6R1Q9UPN7 881 aa23■■□□□ 1.27
HIF3A-213ENST00000529542 ZMYM3Q14202 1370 aa22.99■■□□□ 1.27
HIF3A-213ENST00000529542 MROH2AA6NES4 1674 aa22.98■■□□□ 1.27
HIF3A-213ENST00000529542 A2MP01023 1474 aa22.98■■□□□ 1.27
HIF3A-213ENST00000529542 EHBP1L1Q8N3D4 1523 aa22.95■■□□□ 1.26
HIF3A-213ENST00000529542 INO80Q9ULG1 1556 aaPredicted RBP22.95■■□□□ 1.26
HIF3A-213ENST00000529542 PLXNC1O60486 1568 aa22.94■■□□□ 1.26
HIF3A-213ENST00000529542 CEP162Q5TB80 1403 aa22.94■■□□□ 1.26
HIF3A-213ENST00000529542 RTEL1-TNFRSF6BF6WH68 1400 aa22.92■■□□□ 1.26
HIF3A-213ENST00000529542 SUPT6HQ7KZ85 1726 aaKnown RBP22.92■■□□□ 1.26
HIF3A-213ENST00000529542 NCOA1Q15788 1441 aa22.91■■□□□ 1.26
HIF3A-213ENST00000529542 RSPH4AQ5TD94 716 aa22.91■■□□□ 1.26
HIF3A-213ENST00000529542 TIAM1Q13009 1591 aa22.9■■□□□ 1.26
HIF3A-213ENST00000529542 GGT6Q6P531 493 aa22.9■■□□□ 1.26
HIF3A-213ENST00000529542 MBD5Q9P267 1494 aa22.9■■□□□ 1.26
HIF3A-213ENST00000529542 ZNF644Q9H582 1327 aaPredicted RBP22.88■■□□□ 1.25
HIF3A-213ENST00000529542 ADGBQ8N7X0 1667 aa22.87■■□□□ 1.25
HIF3A-213ENST00000529542 DHX29Q7Z478 1369 aaKnown RBP22.85■■□□□ 1.25
HIF3A-213ENST00000529542 PTPRKQ15262 1439 aa22.84■■□□□ 1.25
HIF3A-213ENST00000529542 CAMSAP1Q5T5Y3 1602 aa22.84■■□□□ 1.25
HIF3A-213ENST00000529542 PKD2Q13563 968 aa22.84■■□□□ 1.25
HIF3A-213ENST00000529542 IQSEC2Q5JU85 1478 aa22.84■■□□□ 1.25
HIF3A-213ENST00000529542 CLTCQ00610 1675 aaKnown RBP22.84■■□□□ 1.25
HIF3A-213ENST00000529542 PLA2R1Q13018 1463 aa22.82■■□□□ 1.24
HIF3A-213ENST00000529542 CCDC141Q6ZP82 1450 aa22.8■■□□□ 1.24
HIF3A-213ENST00000529542 LTBP4Q8N2S1 1624 aa22.8■■□□□ 1.24
HIF3A-213ENST00000529542 NCOA2Q15596 1464 aa22.79■■□□□ 1.24
HIF3A-213ENST00000529542 FAM135AQ9P2D6 1515 aa22.78■■□□□ 1.24
HIF3A-213ENST00000529542 ZNF142P52746 1687 aaPredicted RBP22.78■■□□□ 1.24
HIF3A-213ENST00000529542 NCKAP5LQ9HCH0 1330 aa22.77■■□□□ 1.24
HIF3A-213ENST00000529542 CEP170BQ9Y4F5 1589 aaPredicted RBP22.76■■□□□ 1.23
HIF3A-213ENST00000529542 MYO3AQ8NEV4 1616 aa22.76■■□□□ 1.23
HIF3A-213ENST00000529542 KIF3BO15066 747 aa22.76■■□□□ 1.23
HIF3A-213ENST00000529542 TSPY4P0CV99 314 aa22.76■■□□□ 1.23
HIF3A-213ENST00000529542 TSPY10P0CW01 314 aa22.76■■□□□ 1.23
HIF3A-213ENST00000529542 CAMSAP2Q08AD1 1489 aa22.76■■□□□ 1.23
HIF3A-213ENST00000529542 TCOF1Q13428 1488 aaKnown RBP22.74■■□□□ 1.23
HIF3A-213ENST00000529542 A2ML1A8K2U0 1454 aa22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms