RNA–Protein interactions for RNA: ENST00000529355.1

CTR9-204, Transcript of CTR9 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 2

Gene CTR9, Length 1,146 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9-204ENST00000529355 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.96□□□□□ -0.49
CTR9-204ENST00000529355 PLCG2P16885 1265 aa11.95□□□□□ -0.5
CTR9-204ENST00000529355 ILDR1Q86SU0 546 aaPredicted RBP11.94□□□□□ -0.5
CTR9-204ENST00000529355 MARVELD3Q96A59 401 aa11.94□□□□□ -0.5
CTR9-204ENST00000529355 IRX5P78411 483 aaPredicted RBP11.93□□□□□ -0.5
CTR9-204ENST00000529355 KDM2AQ9Y2K7 1162 aa11.93□□□□□ -0.5
CTR9-204ENST00000529355 CADPS2Q86UW7 1296 aa11.91□□□□□ -0.5
CTR9-204ENST00000529355 PDCD7Q8N8D1 485 aaKnown RBP11.91□□□□□ -0.5
CTR9-204ENST00000529355 RYDENQ9NUL5 291 aaKnown RBP11.86□□□□□ -0.51
CTR9-204ENST00000529355 OCEL1Q9H607 264 aa11.85□□□□□ -0.51
CTR9-204ENST00000529355 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.85□□□□□ -0.51
CTR9-204ENST00000529355 EMP3P54852 163 aa11.84□□□□□ -0.51
CTR9-204ENST00000529355 KRTAP3-3Q9BYR6 98 aa11.81□□□□□ -0.52
CTR9-204ENST00000529355 KRTAP3-2Q9BYR7 98 aa11.81□□□□□ -0.52
CTR9-204ENST00000529355 VSIG10Q8N0Z9 540 aa11.78□□□□□ -0.52
CTR9-204ENST00000529355 HS3ST6Q96QI5 342 aa11.76□□□□□ -0.53
CTR9-204ENST00000529355 MICALL2Q8IY33 904 aa11.75□□□□□ -0.53
CTR9-204ENST00000529355 NCKAP5LQ9HCH0 1330 aa11.73□□□□□ -0.53
CTR9-204ENST00000529355 BOLA1Q9Y3E2 137 aa11.73□□□□□ -0.53
CTR9-204ENST00000529355 FAM205CA6NFA0 338 aa11.71□□□□□ -0.53
CTR9-204ENST00000529355 TMEM92Q6UXU6 159 aa11.68□□□□□ -0.54
CTR9-204ENST00000529355 POTEB3A0JP26 581 aa11.66□□□□□ -0.54
CTR9-204ENST00000529355 POTEBQ6S5H4 581 aa11.66□□□□□ -0.54
CTR9-204ENST00000529355 L3MBTL3Q96JM7 780 aaPredicted RBP11.65□□□□□ -0.54
CTR9-204ENST00000529355 CRISPLD2Q9H0B8 497 aa11.65□□□□□ -0.54
CTR9-204ENST00000529355 C3orf67Q6ZVT6 689 aa11.64□□□□□ -0.55
CTR9-204ENST00000529355 RNF166Q96A37 237 aaPredicted RBP11.64□□□□□ -0.55
CTR9-204ENST00000529355 LARP6Q9BRS8 491 aaKnown RBP11.64□□□□□ -0.55
CTR9-204ENST00000529355 G3V3G9 751 aa11.6□□□□□ -0.55
CTR9-204ENST00000529355 C2orf72A6NCS6 295 aa11.59□□□□□ -0.55
CTR9-204ENST00000529355 PDE4AP27815 886 aa11.59□□□□□ -0.55
CTR9-204ENST00000529355 GPHNQ9NQX3 736 aaPredicted RBP11.58□□□□□ -0.56
CTR9-204ENST00000529355 KIF3CO14782 793 aa11.57□□□□□ -0.56
CTR9-204ENST00000529355 DSG2Q14126 1118 aa11.56□□□□□ -0.56
CTR9-204ENST00000529355 MFSD10Q14728 455 aa11.56□□□□□ -0.56
CTR9-204ENST00000529355 WDR70Q9NW82 654 aa11.55□□□□□ -0.56
CTR9-204ENST00000529355 DDX27Q96GQ7 796 aaKnown RBP11.54□□□□□ -0.56
CTR9-204ENST00000529355 TMC2Q8TDI7 906 aa11.53□□□□□ -0.56
CTR9-204ENST00000529355 KCNV2Q8TDN2 545 aa11.53□□□□□ -0.56
CTR9-204ENST00000529355 PPP1R15BQ5SWA1 713 aa11.52□□□□□ -0.57
CTR9-204ENST00000529355 MYT1LQ9UL68 1186 aa11.51□□□□□ -0.57
CTR9-204ENST00000529355 FOXK1P85037 733 aa11.49□□□□□ -0.57
CTR9-204ENST00000529355 PLPP6Q8IY26 295 aa11.49□□□□□ -0.57
CTR9-204ENST00000529355 E2F4Q16254 413 aa11.48□□□□□ -0.57
CTR9-204ENST00000529355 EMILIN3Q9NT22 766 aa11.46□□□□□ -0.57
CTR9-204ENST00000529355 CAMK2BQ13554 666 aa11.44□□□□□ -0.58
CTR9-204ENST00000529355 ERBB3P21860 1342 aa11.42□□□□□ -0.58
CTR9-204ENST00000529355 PTGER2P43116 358 aa11.42□□□□□ -0.58
CTR9-204ENST00000529355 HOXB1P14653 301 aaPredicted RBP11.4□□□□□ -0.58
CTR9-204ENST00000529355 ZNF710Q8N1W2 664 aa11.39□□□□□ -0.59
CTR9-204ENST00000529355 UPF1Q92900 1129 aaKnown RBP eCLIP11.39□□□□□ -0.59
CTR9-204ENST00000529355 DPYSL4O14531 572 aa11.37□□□□□ -0.59
CTR9-204ENST00000529355 P3H3Q8IVL6 736 aa11.35□□□□□ -0.59
CTR9-204ENST00000529355 HOXB3P14651 431 aaPredicted RBP11.34□□□□□ -0.59
CTR9-204ENST00000529355 ARHGEF1Q92888 912 aaKnown RBP11.34□□□□□ -0.59
CTR9-204ENST00000529355 BCANQ96GW7 911 aa11.34□□□□□ -0.59
CTR9-204ENST00000529355 SEMA3EO15041 775 aa11.32□□□□□ -0.6
CTR9-204ENST00000529355 DOK7Q18PE1 504 aa11.32□□□□□ -0.6
CTR9-204ENST00000529355 OXER1Q8TDS5 423 aa11.32□□□□□ -0.6
CTR9-204ENST00000529355 NBR1Q14596 966 aa11.3□□□□□ -0.6
CTR9-204ENST00000529355 KHSRPQ92945 711 aaKnown RBP eCLIP11.3□□□□□ -0.6
CTR9-204ENST00000529355 ARIH1Q9Y4X5 557 aaPredicted RBP11.3□□□□□ -0.6
CTR9-204ENST00000529355 VARS2Q5ST30 1063 aaKnown RBP11.29□□□□□ -0.6
CTR9-204ENST00000529355 RIMBP2O15034 1052 aa11.28□□□□□ -0.6
CTR9-204ENST00000529355 MAP3K9P80192 1104 aa11.27□□□□□ -0.61
CTR9-204ENST00000529355 MLLT3P42568 568 aaPredicted RBP11.26□□□□□ -0.61
CTR9-204ENST00000529355 ZNF687Q8N1G0 1237 aa11.26□□□□□ -0.61
CTR9-204ENST00000529355 PTCD2Q8WV60 388 aaKnown RBP11.26□□□□□ -0.61
CTR9-204ENST00000529355 SLC34A2O95436 690 aa11.25□□□□□ -0.61
CTR9-204ENST00000529355 PCDHGA4Q9Y5G9 962 aa11.25□□□□□ -0.61
CTR9-204ENST00000529355 ARSIQ5FYB1 569 aa11.23□□□□□ -0.61
CTR9-204ENST00000529355 PDIA6Q15084 440 aa11.22□□□□□ -0.61
CTR9-204ENST00000529355 TESPA1A2RU30 521 aaPredicted RBP11.21□□□□□ -0.61
CTR9-204ENST00000529355 EVI5O60447 810 aa11.21□□□□□ -0.61
CTR9-204ENST00000529355 GPR153Q6NV75 609 aa11.2□□□□□ -0.62
CTR9-204ENST00000529355 KDM4FA0A1W2PPD8 638 aa11.19□□□□□ -0.62
CTR9-204ENST00000529355 PLA2G2EQ9NZK7 142 aa11.19□□□□□ -0.62
CTR9-204ENST00000529355 NUDT7P0C024 238 aa11.18□□□□□ -0.62
CTR9-204ENST00000529355 DDX12PQ92771 950 aa11.17□□□□□ -0.62
CTR9-204ENST00000529355 PRKCSHP14314 528 aaPredicted RBP11.16□□□□□ -0.62
CTR9-204ENST00000529355 ZSWIM6Q9HCJ5 1215 aa11.16□□□□□ -0.62
CTR9-204ENST00000529355 GRXCR2A6NFK2 248 aa11.15□□□□□ -0.62
CTR9-204ENST00000529355 SPDYE16A6NNV3 312 aaPredicted RBP11.15□□□□□ -0.62
CTR9-204ENST00000529355 TBC1D12O60347 775 aa11.15□□□□□ -0.62
CTR9-204ENST00000529355 PRIM1P49642 420 aaKnown RBP11.15□□□□□ -0.62
CTR9-204ENST00000529355 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.14□□□□□ -0.63
CTR9-204ENST00000529355 ANO8Q9HCE9 1232 aaPredicted RBP11.14□□□□□ -0.63
CTR9-204ENST00000529355 RBM26Q5T8P6 1007 aaKnown RBP11.12□□□□□ -0.63
CTR9-204ENST00000529355 ANKRD13DQ6ZTN6 518 aa11.12□□□□□ -0.63
CTR9-204ENST00000529355 OSBPP22059 807 aa11.09□□□□□ -0.63
CTR9-204ENST00000529355 LMOD2Q6P5Q4 547 aa11.09□□□□□ -0.63
CTR9-204ENST00000529355 LHX6Q9UPM6 363 aa11.09□□□□□ -0.63
CTR9-204ENST00000529355 TPRNQ4KMQ1 711 aa11.07□□□□□ -0.64
CTR9-204ENST00000529355 PCDHGA10Q9Y5H3 936 aa11.07□□□□□ -0.64
CTR9-204ENST00000529355 HCSTQ9UBK5 93 aa11.06□□□□□ -0.64
CTR9-204ENST00000529355 LSM11P83369 360 aaKnown RBP eCLIP11.03□□□□□ -0.64
CTR9-204ENST00000529355 RBM33Q96EV2 1170 aaKnown RBP11.03□□□□□ -0.64
CTR9-204ENST00000529355 FOSBP53539 338 aa11.02□□□□□ -0.65
CTR9-204ENST00000529355 ZNF454Q8N9F8 522 aa11.02□□□□□ -0.65
CTR9-204ENST00000529355 ZNF316A6NFI3 1004 aaPredicted RBP11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 99.8 ms