RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 ILDR1Q86SU0 546 aaPredicted RBP21.09■□□□□ 0.97
CPSF1-204ENST00000529288 KIF14Q15058 1648 aa21.08■□□□□ 0.97
CPSF1-204ENST00000529288 BCORL1Q5H9F3 1711 aa21.07■□□□□ 0.96
CPSF1-204ENST00000529288 POGZQ7Z3K3 1410 aa21.07■□□□□ 0.96
CPSF1-204ENST00000529288 CASKIN1Q8WXD9 1431 aa21.06■□□□□ 0.96
CPSF1-204ENST00000529288 ARHGAP5Q13017 1502 aa21.06■□□□□ 0.96
CPSF1-204ENST00000529288 MADDQ8WXG6 1647 aa21.06■□□□□ 0.96
CPSF1-204ENST00000529288 AFAP1Q8N556 730 aa21.05■□□□□ 0.96
CPSF1-204ENST00000529288 MAGI2Q86UL8 1455 aa21.05■□□□□ 0.96
CPSF1-204ENST00000529288 ZMYM4Q5VZL5 1548 aa21.04■□□□□ 0.96
CPSF1-204ENST00000529288 PCF11O94913 1555 aaKnown RBP21.03■□□□□ 0.96
CPSF1-204ENST00000529288 MYO5CQ9NQX4 1742 aa21.03■□□□□ 0.96
CPSF1-204ENST00000529288 CCDC18Q5T9S5 1454 aa21.01■□□□□ 0.95
CPSF1-204ENST00000529288 LRRIQ1Q96JM4 1722 aa20.99■□□□□ 0.95
CPSF1-204ENST00000529288 ZNF777Q9ULD5 760 aaPredicted RBP20.99■□□□□ 0.95
CPSF1-204ENST00000529288 ATP10AO60312 1499 aa20.99■□□□□ 0.95
CPSF1-204ENST00000529288 RIMS1Q86UR5 1692 aaKnown RBP20.99■□□□□ 0.95
CPSF1-204ENST00000529288 ZNF518AQ6AHZ1 1483 aa20.96■□□□□ 0.95
CPSF1-204ENST00000529288 C9orf84Q5VXU9 1444 aa20.95■□□□□ 0.95
CPSF1-204ENST00000529288 FYCO1Q9BQS8 1478 aa20.95■□□□□ 0.94
CPSF1-204ENST00000529288 HSPA2P54652 639 aa20.94■□□□□ 0.94
CPSF1-204ENST00000529288 SIGLEC1Q9BZZ2 1709 aa20.93■□□□□ 0.94
CPSF1-204ENST00000529288 CEBPAP49715 358 aaPredicted RBP20.91■□□□□ 0.94
CPSF1-204ENST00000529288 TRAPPC8Q9Y2L5 1435 aa20.91■□□□□ 0.94
CPSF1-204ENST00000529288 LMTK3Q96Q04 1460 aa20.89■□□□□ 0.94
CPSF1-204ENST00000529288 CDC42BPBQ9Y5S2 1711 aa20.88■□□□□ 0.93
CPSF1-204ENST00000529288 ARHGEF12Q9NZN5 1544 aa20.88■□□□□ 0.93
CPSF1-204ENST00000529288 PREX2Q70Z35 1606 aa20.86■□□□□ 0.93
CPSF1-204ENST00000529288 HNRNPMP52272 730 aaKnown RBP eCLIP20.86■□□□□ 0.93
CPSF1-204ENST00000529288 ESF1Q9H501 851 aaKnown RBP20.86■□□□□ 0.93
CPSF1-204ENST00000529288 MTUS2Q5JR59 1369 aa20.85■□□□□ 0.93
CPSF1-204ENST00000529288 KDM5CP41229 1560 aa20.85■□□□□ 0.93
CPSF1-204ENST00000529288 CFDP1Q9UEE9 299 aaPredicted RBP20.85■□□□□ 0.93
CPSF1-204ENST00000529288 ABCC1P33527 1531 aa20.84■□□□□ 0.93
CPSF1-204ENST00000529288 CCNB3Q8WWL7 1395 aa20.84■□□□□ 0.93
CPSF1-204ENST00000529288 MLH3Q9UHC1 1453 aa20.83■□□□□ 0.93
CPSF1-204ENST00000529288 FER1L4A9Z1Z3 1794 aa20.83■□□□□ 0.93
CPSF1-204ENST00000529288 DIP2CQ9Y2E4 1556 aa20.82■□□□□ 0.92
CPSF1-204ENST00000529288 GPATCH8Q9UKJ3 1502 aaKnown RBP20.82■□□□□ 0.92
CPSF1-204ENST00000529288 SPAG9O60271 1321 aaKnown RBP20.81■□□□□ 0.92
CPSF1-204ENST00000529288 CEP162Q5TB80 1403 aa20.8■□□□□ 0.92
CPSF1-204ENST00000529288 CDC42BPAQ5VT25 1732 aa20.79■□□□□ 0.92
CPSF1-204ENST00000529288 ABCA6Q8N139 1617 aa20.78■□□□□ 0.92
CPSF1-204ENST00000529288 ITSN2Q9NZM3 1697 aa20.78■□□□□ 0.92
CPSF1-204ENST00000529288 LOC105371045A0A1W2PR82 267 aa20.77■□□□□ 0.92
CPSF1-204ENST00000529288 FBXO41Q8TF61 875 aa20.76■□□□□ 0.91
CPSF1-204ENST00000529288 SYCP2Q9BX26 1530 aa20.76■□□□□ 0.91
CPSF1-204ENST00000529288 SAMD9LQ8IVG5 1584 aa20.76■□□□□ 0.91
CPSF1-204ENST00000529288 ZNF644Q9H582 1327 aaPredicted RBP20.74■□□□□ 0.91
CPSF1-204ENST00000529288 REREQ9P2R6 1566 aa20.72■□□□□ 0.91
CPSF1-204ENST00000529288 PLEKHH2Q8IVE3 1493 aa20.71■□□□□ 0.91
CPSF1-204ENST00000529288 AGLP35573 1532 aa20.71■□□□□ 0.91
CPSF1-204ENST00000529288 KIDINS220Q9ULH0 1771 aa20.71■□□□□ 0.91
CPSF1-204ENST00000529288 UHRF1BP1Q6BDS2 1440 aa20.7■□□□□ 0.9
CPSF1-204ENST00000529288 KIAA1107Q9UPP5 1409 aa20.7■□□□□ 0.9
CPSF1-204ENST00000529288 GGT6Q6P531 493 aa20.68■□□□□ 0.9
CPSF1-204ENST00000529288 EHBP1L1Q8N3D4 1523 aa20.68■□□□□ 0.9
CPSF1-204ENST00000529288 ATP7AQ04656 1500 aa20.65■□□□□ 0.9
CPSF1-204ENST00000529288 PREX1Q8TCU6 1659 aa20.64■□□□□ 0.9
CPSF1-204ENST00000529288 CNTLNQ9NXG0 1405 aa20.64■□□□□ 0.89
CPSF1-204ENST00000529288 TIAM1Q13009 1591 aa20.63■□□□□ 0.89
CPSF1-204ENST00000529288 A2MP01023 1474 aa20.63■□□□□ 0.89
CPSF1-204ENST00000529288 DMRT2Q9Y5R5 561 aa20.63■□□□□ 0.89
CPSF1-204ENST00000529288 CERKQ8TCT0 537 aa20.62■□□□□ 0.89
CPSF1-204ENST00000529288 ZMYM3Q14202 1370 aa20.61■□□□□ 0.89
CPSF1-204ENST00000529288 SUPT6HQ7KZ85 1726 aaKnown RBP20.61■□□□□ 0.89
CPSF1-204ENST00000529288 C3P01024 1663 aa20.61■□□□□ 0.89
CPSF1-204ENST00000529288 NCOA2Q15596 1464 aa20.6■□□□□ 0.89
CPSF1-204ENST00000529288 MBD5Q9P267 1494 aa20.57■□□□□ 0.88
CPSF1-204ENST00000529288 INO80Q9ULG1 1556 aaPredicted RBP20.57■□□□□ 0.88
CPSF1-204ENST00000529288 VPS8Q8N3P4 1428 aa20.56■□□□□ 0.88
CPSF1-204ENST00000529288 KIF3BO15066 747 aa20.54■□□□□ 0.88
CPSF1-204ENST00000529288 TSPY4P0CV99 314 aa20.53■□□□□ 0.88
CPSF1-204ENST00000529288 TSPY10P0CW01 314 aa20.53■□□□□ 0.88
CPSF1-204ENST00000529288 RSPH4AQ5TD94 716 aa20.53■□□□□ 0.88
CPSF1-204ENST00000529288 CAMSAP2Q08AD1 1489 aa20.53■□□□□ 0.88
CPSF1-204ENST00000529288 DHX29Q7Z478 1369 aaKnown RBP20.52■□□□□ 0.88
CPSF1-204ENST00000529288 KANK4Q5T7N3 995 aaPredicted RBP20.52■□□□□ 0.88
CPSF1-204ENST00000529288 RTEL1-TNFRSF6BF6WH68 1400 aa20.52■□□□□ 0.87
CPSF1-204ENST00000529288 SETD1BQ9UPS6 1966 aaKnown RBP20.52■□□□□ 0.87
CPSF1-204ENST00000529288 PLXNC1O60486 1568 aa20.51■□□□□ 0.87
CPSF1-204ENST00000529288 CCDC141Q6ZP82 1450 aa20.51■□□□□ 0.87
CPSF1-204ENST00000529288 NPATQ14207 1427 aa20.51■□□□□ 0.87
CPSF1-204ENST00000529288 PPP6R1Q9UPN7 881 aa20.5■□□□□ 0.87
CPSF1-204ENST00000529288 CLTCQ00610 1675 aaKnown RBP20.5■□□□□ 0.87
CPSF1-204ENST00000529288 LRRC9Q6ZRR7 1453 aa20.5■□□□□ 0.87
CPSF1-204ENST00000529288 NCKAP5LQ9HCH0 1330 aa20.49■□□□□ 0.87
CPSF1-204ENST00000529288 STRCQ7RTU9 1775 aa20.49■□□□□ 0.87
CPSF1-204ENST00000529288 ADGBQ8N7X0 1667 aa20.48■□□□□ 0.87
CPSF1-204ENST00000529288 APLP2Q06481 763 aa20.47■□□□□ 0.87
CPSF1-204ENST00000529288 PTPRTO14522 1441 aa20.46■□□□□ 0.87
CPSF1-204ENST00000529288 PTPRKQ15262 1439 aa20.46■□□□□ 0.87
CPSF1-204ENST00000529288 MROH2AA6NES4 1674 aa20.46■□□□□ 0.87
CPSF1-204ENST00000529288 NCOA1Q15788 1441 aa20.45■□□□□ 0.86
CPSF1-204ENST00000529288 WASHC2CQ9Y4E1 1318 aa20.45■□□□□ 0.86
CPSF1-204ENST00000529288 CAMSAP1Q5T5Y3 1602 aa20.44■□□□□ 0.86
CPSF1-204ENST00000529288 FBXO31Q5XUX0 539 aaPredicted RBP20.43■□□□□ 0.86
CPSF1-204ENST00000529288 ARHGEF5Q12774 1597 aa20.38■□□□□ 0.85
CPSF1-204ENST00000529288 PKD2Q13563 968 aa20.37■□□□□ 0.85
CPSF1-204ENST00000529288 MYOM3Q5VTT5 1437 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 147.5 ms