RNA–Protein interactions for RNA: ENST00000528563.5

HIF3A-211, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 2

Gene HIF3A, Length 1,486 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-211ENST00000528563 KDM4FA0A1W2PPD8 638 aa26.67■■□□□ 1.86
HIF3A-211ENST00000528563 RICTORQ6R327 1708 aa26.65■■□□□ 1.86
HIF3A-211ENST00000528563 GPATCH8Q9UKJ3 1502 aaKnown RBP26.65■■□□□ 1.86
HIF3A-211ENST00000528563 PREX2Q70Z35 1606 aa26.63■■□□□ 1.85
HIF3A-211ENST00000528563 TIAM1Q13009 1591 aa26.62■■□□□ 1.85
HIF3A-211ENST00000528563 EHBP1L1Q8N3D4 1523 aa26.62■■□□□ 1.85
HIF3A-211ENST00000528563 CDC42BPAQ5VT25 1732 aa26.62■■□□□ 1.85
HIF3A-211ENST00000528563 AEBP2Q6ZN18 517 aaPredicted RBP26.62■■□□□ 1.85
HIF3A-211ENST00000528563 POGZQ7Z3K3 1410 aa26.61■■□□□ 1.85
HIF3A-211ENST00000528563 CCNB3Q8WWL7 1395 aa26.6■■□□□ 1.85
HIF3A-211ENST00000528563 MAP3K1Q13233 1512 aa26.59■■□□□ 1.85
HIF3A-211ENST00000528563 ZMYM4Q5VZL5 1548 aa26.57■■□□□ 1.84
HIF3A-211ENST00000528563 AFAP1Q8N556 730 aa26.57■■□□□ 1.84
HIF3A-211ENST00000528563 CFDP1Q9UEE9 299 aaPredicted RBP26.57■■□□□ 1.84
HIF3A-211ENST00000528563 KANK4Q5T7N3 995 aaPredicted RBP26.55■■□□□ 1.84
HIF3A-211ENST00000528563 MAGI2Q86UL8 1455 aa26.55■■□□□ 1.84
HIF3A-211ENST00000528563 ZNF777Q9ULD5 760 aaPredicted RBP26.55■■□□□ 1.84
HIF3A-211ENST00000528563 LRRC9Q6ZRR7 1453 aa26.54■■□□□ 1.84
HIF3A-211ENST00000528563 ARHGEF12Q9NZN5 1544 aa26.54■■□□□ 1.84
HIF3A-211ENST00000528563 ZNF518AQ6AHZ1 1483 aa26.53■■□□□ 1.84
HIF3A-211ENST00000528563 NCOA2Q15596 1464 aa26.51■■□□□ 1.83
HIF3A-211ENST00000528563 ABCC1P33527 1531 aa26.51■■□□□ 1.83
HIF3A-211ENST00000528563 YEATS2Q9ULM3 1422 aa26.51■■□□□ 1.83
HIF3A-211ENST00000528563 TRAPPC8Q9Y2L5 1435 aa26.5■■□□□ 1.83
HIF3A-211ENST00000528563 ARHGEF40Q8TER5 1519 aa26.49■■□□□ 1.83
HIF3A-211ENST00000528563 APLP2Q06481 763 aa26.49■■□□□ 1.83
HIF3A-211ENST00000528563 SUPT6HQ7KZ85 1726 aaKnown RBP26.48■■□□□ 1.83
HIF3A-211ENST00000528563 SAMD9LQ8IVG5 1584 aa26.48■■□□□ 1.83
HIF3A-211ENST00000528563 ZFYVE16Q7Z3T8 1539 aa26.47■■□□□ 1.83
HIF3A-211ENST00000528563 KDM5CP41229 1560 aa26.47■■□□□ 1.83
HIF3A-211ENST00000528563 HNRNPMP52272 730 aaKnown RBP eCLIP26.47■■□□□ 1.83
HIF3A-211ENST00000528563 KIAA1107Q9UPP5 1409 aa26.47■■□□□ 1.83
HIF3A-211ENST00000528563 ZNF644Q9H582 1327 aaPredicted RBP26.46■■□□□ 1.83
HIF3A-211ENST00000528563 ITSN2Q9NZM3 1697 aa26.44■■□□□ 1.82
HIF3A-211ENST00000528563 PLEKHH2Q8IVE3 1493 aa26.44■■□□□ 1.82
HIF3A-211ENST00000528563 MLH3Q9UHC1 1453 aa26.43■■□□□ 1.82
HIF3A-211ENST00000528563 ARID4BQ4LE39 1312 aaPredicted RBP26.42■■□□□ 1.82
HIF3A-211ENST00000528563 ATP10AO60312 1499 aa26.41■■□□□ 1.82
HIF3A-211ENST00000528563 SYCP2Q9BX26 1530 aa26.4■■□□□ 1.82
HIF3A-211ENST00000528563 MYT1LQ9UL68 1186 aa26.39■■□□□ 1.82
HIF3A-211ENST00000528563 HECW2Q9P2P5 1572 aa26.37■■□□□ 1.81
HIF3A-211ENST00000528563 MBD5Q9P267 1494 aa26.35■■□□□ 1.81
HIF3A-211ENST00000528563 SPAG9O60271 1321 aaKnown RBP26.34■■□□□ 1.81
HIF3A-211ENST00000528563 C9orf84Q5VXU9 1444 aa26.33■■□□□ 1.81
HIF3A-211ENST00000528563 SIGLEC1Q9BZZ2 1709 aa26.33■■□□□ 1.81
HIF3A-211ENST00000528563 ADAMTSL3P82987 1691 aa26.32■■□□□ 1.8
HIF3A-211ENST00000528563 BCORL1Q5H9F3 1711 aa26.32■■□□□ 1.8
HIF3A-211ENST00000528563 KIDINS220Q9ULH0 1771 aa26.31■■□□□ 1.8
HIF3A-211ENST00000528563 DIP2CQ9Y2E4 1556 aa26.3■■□□□ 1.8
HIF3A-211ENST00000528563 MYOM3Q5VTT5 1437 aa26.3■■□□□ 1.8
HIF3A-211ENST00000528563 RSPH4AQ5TD94 716 aa26.3■■□□□ 1.8
HIF3A-211ENST00000528563 CAMSAP2Q08AD1 1489 aa26.29■■□□□ 1.8
HIF3A-211ENST00000528563 ABCA6Q8N139 1617 aa26.28■■□□□ 1.8
HIF3A-211ENST00000528563 MIA2Q96PC5 1412 aa26.27■■□□□ 1.8
HIF3A-211ENST00000528563 REREQ9P2R6 1566 aa26.25■■□□□ 1.79
HIF3A-211ENST00000528563 MLECQ14165 292 aa26.24■■□□□ 1.79
HIF3A-211ENST00000528563 ATP7AQ04656 1500 aa26.23■■□□□ 1.79
HIF3A-211ENST00000528563 INO80Q9ULG1 1556 aaPredicted RBP26.21■■□□□ 1.79
HIF3A-211ENST00000528563 RTEL1-TNFRSF6BF6WH68 1400 aa26.21■■□□□ 1.79
HIF3A-211ENST00000528563 PTPRMP28827 1452 aa26.2■■□□□ 1.79
HIF3A-211ENST00000528563 MADDQ8WXG6 1647 aa26.2■■□□□ 1.78
HIF3A-211ENST00000528563 AGLP35573 1532 aa26.2■■□□□ 1.78
HIF3A-211ENST00000528563 CCDC141Q6ZP82 1450 aa26.2■■□□□ 1.78
HIF3A-211ENST00000528563 ARHGEF5Q12774 1597 aa26.18■■□□□ 1.78
HIF3A-211ENST00000528563 TSPY4P0CV99 314 aa26.17■■□□□ 1.78
HIF3A-211ENST00000528563 TSPY10P0CW01 314 aa26.17■■□□□ 1.78
HIF3A-211ENST00000528563 A2MP01023 1474 aa26.14■■□□□ 1.77
HIF3A-211ENST00000528563 FGD6Q6ZV73 1430 aa26.13■■□□□ 1.77
HIF3A-211ENST00000528563 RIMS1Q86UR5 1692 aaKnown RBP26.1■■□□□ 1.77
HIF3A-211ENST00000528563 PTPN23Q9H3S7 1636 aa26.09■■□□□ 1.77
HIF3A-211ENST00000528563 DHX29Q7Z478 1369 aaKnown RBP26.09■■□□□ 1.77
HIF3A-211ENST00000528563 PLXNC1O60486 1568 aa26.09■■□□□ 1.77
HIF3A-211ENST00000528563 TCOF1Q13428 1488 aaKnown RBP26.08■■□□□ 1.77
HIF3A-211ENST00000528563 ADGBQ8N7X0 1667 aa26.08■■□□□ 1.76
HIF3A-211ENST00000528563 FER1L4A9Z1Z3 1794 aa26.07■■□□□ 1.76
HIF3A-211ENST00000528563 ABCC5O15440 1437 aa26.04■■□□□ 1.76
HIF3A-211ENST00000528563 PPARGC1BQ86YN6 1023 aaKnown RBP26.04■■□□□ 1.76
HIF3A-211ENST00000528563 MAST1Q9Y2H9 1570 aa26.03■■□□□ 1.76
HIF3A-211ENST00000528563 CEBPAP49715 358 aaPredicted RBP26.01■■□□□ 1.75
HIF3A-211ENST00000528563 ESF1Q9H501 851 aaKnown RBP26.01■■□□□ 1.75
HIF3A-211ENST00000528563 GGT6Q6P531 493 aa26■■□□□ 1.75
HIF3A-211ENST00000528563 PLPPR3Q6T4P5 718 aa26■■□□□ 1.75
HIF3A-211ENST00000528563 PPP6R1Q9UPN7 881 aa25.98■■□□□ 1.75
HIF3A-211ENST00000528563 DAPK1P53355 1430 aa25.98■■□□□ 1.75
HIF3A-211ENST00000528563 KIF3BO15066 747 aa25.98■■□□□ 1.75
HIF3A-211ENST00000528563 FAM50AQ14320 339 aaKnown RBP25.97■■□□□ 1.75
HIF3A-211ENST00000528563 CNTLNQ9NXG0 1405 aa25.96■■□□□ 1.75
HIF3A-211ENST00000528563 SHANK2Q9UPX8 1470 aa25.96■■□□□ 1.75
HIF3A-211ENST00000528563 DNMT1P26358 1616 aaKnown RBP25.96■■□□□ 1.75
HIF3A-211ENST00000528563 CROCC2H7BZ55 1655 aa25.91■■□□□ 1.74
HIF3A-211ENST00000528563 RRP7BPQ9NSQ0 103 aa25.91■■□□□ 1.74
HIF3A-211ENST00000528563 CHIC2Q9UKJ5 165 aa25.91■■□□□ 1.74
HIF3A-211ENST00000528563 ZMYM3Q14202 1370 aa25.91■■□□□ 1.74
HIF3A-211ENST00000528563 KIF15Q9NS87 1388 aa25.88■■□□□ 1.73
HIF3A-211ENST00000528563 C3P01024 1663 aa25.87■■□□□ 1.73
HIF3A-211ENST00000528563 DUOX2Q9NRD8 1548 aa25.87■■□□□ 1.73
HIF3A-211ENST00000528563 LMTK3Q96Q04 1460 aa25.86■■□□□ 1.73
HIF3A-211ENST00000528563 ANKRD30AQ9BXX3 1397 aa25.86■■□□□ 1.73
HIF3A-211ENST00000528563 NCOA1Q15788 1441 aa25.86■■□□□ 1.73
HIF3A-211ENST00000528563 SETD1BQ9UPS6 1966 aaKnown RBP25.85■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms