RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 SCAPERQ9BY12 1400 aa39.07■■■■□ 3.85
CPSF1-202ENST00000527827 LMTK3Q96Q04 1460 aa39.07■■■■□ 3.85
CPSF1-202ENST00000527827 POGZQ7Z3K3 1410 aa39.06■■■■□ 3.84
CPSF1-202ENST00000527827 MYO5CQ9NQX4 1742 aa39.04■■■■□ 3.84
CPSF1-202ENST00000527827 KIF14Q15058 1648 aa39■■■■□ 3.83
CPSF1-202ENST00000527827 CDK11AQ9UQ88 783 aaPredicted RBP38.97■■■■□ 3.83
CPSF1-202ENST00000527827 EFCAB2Q5VUJ9 269 aa38.96■■■■□ 3.83
CPSF1-202ENST00000527827 LRRIQ1Q96JM4 1722 aa38.96■■■■□ 3.83
CPSF1-202ENST00000527827 TROQ12816 1431 aaPredicted RBP38.94■■■■□ 3.82
CPSF1-202ENST00000527827 FER1L4A9Z1Z3 1794 aa38.91■■■■□ 3.82
CPSF1-202ENST00000527827 FBXO41Q8TF61 875 aa38.91■■■■□ 3.82
CPSF1-202ENST00000527827 MLECQ14165 292 aa38.9■■■■□ 3.82
CPSF1-202ENST00000527827 ATP10AO60312 1499 aa38.9■■■■□ 3.82
CPSF1-202ENST00000527827 PLPPR3Q6T4P5 718 aa38.89■■■■□ 3.82
CPSF1-202ENST00000527827 C9orf84Q5VXU9 1444 aa38.85■■■■□ 3.81
CPSF1-202ENST00000527827 CLIP1P30622 1438 aa38.84■■■■□ 3.81
CPSF1-202ENST00000527827 ARHGAP5Q13017 1502 aa38.84■■■■□ 3.81
CPSF1-202ENST00000527827 HSPA2P54652 639 aa38.83■■■■□ 3.81
CPSF1-202ENST00000527827 ARHGEF12Q9NZN5 1544 aa38.83■■■■□ 3.81
CPSF1-202ENST00000527827 ZNF518AQ6AHZ1 1483 aa38.81■■■■□ 3.8
CPSF1-202ENST00000527827 KDM5CP41229 1560 aa38.79■■■■□ 3.8
CPSF1-202ENST00000527827 CDC42BPBQ9Y5S2 1711 aa38.77■■■■□ 3.8
CPSF1-202ENST00000527827 AFAP1Q8N556 730 aa38.77■■■■□ 3.8
CPSF1-202ENST00000527827 CASKIN1Q8WXD9 1431 aa38.72■■■■□ 3.79
CPSF1-202ENST00000527827 PREX2Q70Z35 1606 aa38.69■■■■□ 3.78
CPSF1-202ENST00000527827 CCDC18Q5T9S5 1454 aa38.68■■■■□ 3.78
CPSF1-202ENST00000527827 DIP2CQ9Y2E4 1556 aa38.68■■■■□ 3.78
CPSF1-202ENST00000527827 ABCC1P33527 1531 aa38.63■■■■□ 3.77
CPSF1-202ENST00000527827 PREX1Q8TCU6 1659 aa38.62■■■■□ 3.77
CPSF1-202ENST00000527827 REREQ9P2R6 1566 aa38.62■■■■□ 3.77
CPSF1-202ENST00000527827 MLH3Q9UHC1 1453 aa38.62■■■■□ 3.77
CPSF1-202ENST00000527827 CEBPAP49715 358 aaPredicted RBP38.62■■■■□ 3.77
CPSF1-202ENST00000527827 ABCA6Q8N139 1617 aa38.62■■■■□ 3.77
CPSF1-202ENST00000527827 MYT1LQ9UL68 1186 aa38.61■■■■□ 3.77
CPSF1-202ENST00000527827 TRAPPC8Q9Y2L5 1435 aa38.6■■■■□ 3.77
CPSF1-202ENST00000527827 ITSN2Q9NZM3 1697 aa38.59■■■■□ 3.77
CPSF1-202ENST00000527827 CDC42BPAQ5VT25 1732 aa38.58■■■■□ 3.77
CPSF1-202ENST00000527827 FYCO1Q9BQS8 1478 aa38.54■■■■□ 3.76
CPSF1-202ENST00000527827 AGLP35573 1532 aa38.5■■■■□ 3.75
CPSF1-202ENST00000527827 KIDINS220Q9ULH0 1771 aa38.49■■■■□ 3.75
CPSF1-202ENST00000527827 SETD1BQ9UPS6 1966 aaKnown RBP38.48■■■■□ 3.75
CPSF1-202ENST00000527827 C3P01024 1663 aa38.44■■■■□ 3.74
CPSF1-202ENST00000527827 CERKQ8TCT0 537 aa38.43■■■■□ 3.74
CPSF1-202ENST00000527827 STRCQ7RTU9 1775 aa38.42■■■■□ 3.74
CPSF1-202ENST00000527827 UHRF1BP1Q6BDS2 1440 aa38.42■■■■□ 3.74
CPSF1-202ENST00000527827 SAMD9LQ8IVG5 1584 aa38.4■■■■□ 3.74
CPSF1-202ENST00000527827 GPATCH8Q9UKJ3 1502 aaKnown RBP38.38■■■■□ 3.74
CPSF1-202ENST00000527827 ZNF777Q9ULD5 760 aaPredicted RBP38.36■■■■□ 3.73
CPSF1-202ENST00000527827 SYCP2Q9BX26 1530 aa38.34■■■■□ 3.73
CPSF1-202ENST00000527827 ESF1Q9H501 851 aaKnown RBP38.31■■■■□ 3.72
CPSF1-202ENST00000527827 DMRT2Q9Y5R5 561 aa38.29■■■■□ 3.72
CPSF1-202ENST00000527827 HNRNPMP52272 730 aaKnown RBP eCLIP38.28■■■■□ 3.72
CPSF1-202ENST00000527827 CNTLNQ9NXG0 1405 aa38.27■■■■□ 3.72
CPSF1-202ENST00000527827 SPAG9O60271 1321 aaKnown RBP38.25■■■■□ 3.71
CPSF1-202ENST00000527827 KIAA1107Q9UPP5 1409 aa38.23■■■■□ 3.71
CPSF1-202ENST00000527827 SUPT6HQ7KZ85 1726 aaKnown RBP38.21■■■■□ 3.71
CPSF1-202ENST00000527827 CFDP1Q9UEE9 299 aaPredicted RBP38.21■■■■□ 3.71
CPSF1-202ENST00000527827 ATP7AQ04656 1500 aa38.21■■■■□ 3.71
CPSF1-202ENST00000527827 CCNB3Q8WWL7 1395 aa38.2■■■■□ 3.71
CPSF1-202ENST00000527827 PLEKHH2Q8IVE3 1493 aa38.2■■■■□ 3.71
CPSF1-202ENST00000527827 MROH2AA6NES4 1674 aa38.2■■■■□ 3.71
CPSF1-202ENST00000527827 INO80Q9ULG1 1556 aaPredicted RBP38.19■■■■□ 3.7
CPSF1-202ENST00000527827 PTPRTO14522 1441 aa38.17■■■■□ 3.7
CPSF1-202ENST00000527827 MTUS2Q5JR59 1369 aa38.16■■■■□ 3.7
CPSF1-202ENST00000527827 PLXNC1O60486 1568 aa38.14■■■■□ 3.7
CPSF1-202ENST00000527827 NPATQ14207 1427 aa38.12■■■■□ 3.69
CPSF1-202ENST00000527827 A2MP01023 1474 aa38.11■■■■□ 3.69
CPSF1-202ENST00000527827 ZMYM3Q14202 1370 aa38.11■■■■□ 3.69
CPSF1-202ENST00000527827 NCOA1Q15788 1441 aa38.09■■■■□ 3.69
CPSF1-202ENST00000527827 TIAM1Q13009 1591 aa38.09■■■■□ 3.69
CPSF1-202ENST00000527827 CLTCQ00610 1675 aaKnown RBP38.07■■■■□ 3.69
CPSF1-202ENST00000527827 EHBP1L1Q8N3D4 1523 aa38.05■■■■□ 3.68
CPSF1-202ENST00000527827 ZNF644Q9H582 1327 aaPredicted RBP38.04■■■■□ 3.68
CPSF1-202ENST00000527827 ADGBQ8N7X0 1667 aa38.01■■■■□ 3.68
CPSF1-202ENST00000527827 CAMSAP1Q5T5Y3 1602 aa38.01■■■■□ 3.67
CPSF1-202ENST00000527827 MBD5Q9P267 1494 aa38■■■■□ 3.67
CPSF1-202ENST00000527827 LTBP4Q8N2S1 1624 aa38■■■■□ 3.67
CPSF1-202ENST00000527827 CEP162Q5TB80 1403 aa37.97■■■■□ 3.67
CPSF1-202ENST00000527827 GGT6Q6P531 493 aa37.96■■■■□ 3.67
CPSF1-202ENST00000527827 PTPRKQ15262 1439 aa37.95■■■■□ 3.67
CPSF1-202ENST00000527827 MYO3AQ8NEV4 1616 aa37.94■■■■□ 3.66
CPSF1-202ENST00000527827 ZNF142P52746 1687 aaPredicted RBP37.93■■■■□ 3.66
CPSF1-202ENST00000527827 RTEL1-TNFRSF6BF6WH68 1400 aa37.9■■■■□ 3.66
CPSF1-202ENST00000527827 PPP6R1Q9UPN7 881 aa37.89■■■■□ 3.66
CPSF1-202ENST00000527827 CEP170BQ9Y4F5 1589 aaPredicted RBP37.87■■■■□ 3.65
CPSF1-202ENST00000527827 NCKAP5LQ9HCH0 1330 aa37.87■■■■□ 3.65
CPSF1-202ENST00000527827 IQSEC2Q5JU85 1478 aa37.84■■■■□ 3.65
CPSF1-202ENST00000527827 DHX29Q7Z478 1369 aaKnown RBP37.83■■■■□ 3.65
CPSF1-202ENST00000527827 PLA2R1Q13018 1463 aa37.83■■■■□ 3.65
CPSF1-202ENST00000527827 NCOA2Q15596 1464 aa37.82■■■■□ 3.64
CPSF1-202ENST00000527827 CAMSAP2Q08AD1 1489 aa37.78■■■■□ 3.64
CPSF1-202ENST00000527827 TCOF1Q13428 1488 aaKnown RBP37.78■■■■□ 3.64
CPSF1-202ENST00000527827 CCDC141Q6ZP82 1450 aa37.78■■■■□ 3.64
CPSF1-202ENST00000527827 PKD2Q13563 968 aa37.77■■■■□ 3.64
CPSF1-202ENST00000527827 ZNF335Q9H4Z2 1342 aaPredicted RBP37.74■■■■□ 3.63
CPSF1-202ENST00000527827 A2ML1A8K2U0 1454 aa37.71■■■■□ 3.63
CPSF1-202ENST00000527827 DNMT1P26358 1616 aaKnown RBP37.7■■■■□ 3.63
CPSF1-202ENST00000527827 KIF3BO15066 747 aa37.7■■■■□ 3.63
CPSF1-202ENST00000527827 RSPH4AQ5TD94 716 aa37.69■■■■□ 3.62
CPSF1-202ENST00000527827 DISP3Q9P2K9 1392 aa37.68■■■■□ 3.62
Retrieved 100 of 20,778 RNA–protein pairs in 208.9 ms