RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 PLCH2O75038 1416 aa31.4■■■□□ 2.62
VPS28-208ENST00000527797 DAPK1P53355 1430 aa31.39■■■□□ 2.62
VPS28-208ENST00000527797 ARHGAP5Q13017 1502 aa31.38■■■□□ 2.61
VPS28-208ENST00000527797 SETD5Q9C0A6 1442 aa31.38■■■□□ 2.61
VPS28-208ENST00000527797 MYO5CQ9NQX4 1742 aa31.37■■■□□ 2.61
VPS28-208ENST00000527797 CDC42BPBQ9Y5S2 1711 aa31.37■■■□□ 2.61
VPS28-208ENST00000527797 ABCC5O15440 1437 aa31.37■■■□□ 2.61
VPS28-208ENST00000527797 DNMT1P26358 1616 aaKnown RBP31.36■■■□□ 2.61
VPS28-208ENST00000527797 CCER1Q8TC90 406 aaPredicted RBP31.35■■■□□ 2.61
VPS28-208ENST00000527797 MAPKBP1O60336 1514 aa31.34■■■□□ 2.61
VPS28-208ENST00000527797 ABCA9Q8IUA7 1624 aa31.34■■■□□ 2.61
VPS28-208ENST00000527797 EFCAB2Q5VUJ9 269 aa31.33■■■□□ 2.61
VPS28-208ENST00000527797 CHIC2Q9UKJ5 165 aa31.33■■■□□ 2.61
VPS28-208ENST00000527797 HRCP23327 699 aa31.31■■■□□ 2.6
VPS28-208ENST00000527797 RAB3GAP2Q9H2M9 1393 aa31.31■■■□□ 2.6
VPS28-208ENST00000527797 ARAP3Q8WWN8 1544 aa31.3■■■□□ 2.6
VPS28-208ENST00000527797 SAMD9LQ8IVG5 1584 aa31.3■■■□□ 2.6
VPS28-208ENST00000527797 HFM1A2PYH4 1435 aa31.3■■■□□ 2.6
VPS28-208ENST00000527797 PLEKHH2Q8IVE3 1493 aa31.27■■■□□ 2.6
VPS28-208ENST00000527797 HNRNPMP52272 730 aaKnown RBP eCLIP31.27■■■□□ 2.6
VPS28-208ENST00000527797 RSPH4AQ5TD94 716 aa31.27■■■□□ 2.6
VPS28-208ENST00000527797 AKNAQ7Z591 1439 aa31.26■■■□□ 2.59
VPS28-208ENST00000527797 ROCK1Q13464 1354 aa31.26■■■□□ 2.59
VPS28-208ENST00000527797 RRP7BPQ9NSQ0 103 aa31.24■■■□□ 2.59
VPS28-208ENST00000527797 KIAA1107Q9UPP5 1409 aa31.24■■■□□ 2.59
VPS28-208ENST00000527797 MBD5Q9P267 1494 aa31.24■■■□□ 2.59
VPS28-208ENST00000527797 NAIPQ13075 1403 aa31.23■■■□□ 2.59
VPS28-208ENST00000527797 ARHGEF5Q12774 1597 aa31.22■■■□□ 2.59
VPS28-208ENST00000527797 TSPY4P0CV99 314 aa31.21■■■□□ 2.59
VPS28-208ENST00000527797 TSPY10P0CW01 314 aa31.21■■■□□ 2.59
VPS28-208ENST00000527797 ZEB1P37275 1124 aaPredicted RBP31.19■■■□□ 2.58
VPS28-208ENST00000527797 SHANK2Q9UPX8 1470 aa31.18■■■□□ 2.58
VPS28-208ENST00000527797 CD109Q6YHK3 1445 aa31.18■■■□□ 2.58
VPS28-208ENST00000527797 SYCP2Q9BX26 1530 aa31.18■■■□□ 2.58
VPS28-208ENST00000527797 CCDC141Q6ZP82 1450 aa31.18■■■□□ 2.58
VPS28-208ENST00000527797 FANCAO15360 1455 aa31.17■■■□□ 2.58
VPS28-208ENST00000527797 CROCC2H7BZ55 1655 aa31.16■■■□□ 2.58
VPS28-208ENST00000527797 ADGRL2O95490 1459 aa31.14■■■□□ 2.58
VPS28-208ENST00000527797 C9orf84Q5VXU9 1444 aa31.14■■■□□ 2.58
VPS28-208ENST00000527797 ANKRD30AQ9BXX3 1397 aa31.14■■■□□ 2.58
VPS28-208ENST00000527797 ABCC1P33527 1531 aa31.13■■■□□ 2.57
VPS28-208ENST00000527797 DHX57Q6P158 1386 aaKnown RBP31.12■■■□□ 2.57
VPS28-208ENST00000527797 NCOA1Q15788 1441 aa31.12■■■□□ 2.57
VPS28-208ENST00000527797 ARHGEF12Q9NZN5 1544 aa31.11■■■□□ 2.57
VPS28-208ENST00000527797 GCC2Q8IWJ2 1684 aa31.11■■■□□ 2.57
VPS28-208ENST00000527797 GLI2P10070 1586 aa31.1■■■□□ 2.57
VPS28-208ENST00000527797 ADGBQ8N7X0 1667 aa31.09■■■□□ 2.57
VPS28-208ENST00000527797 FAM69CQ0P6D2 419 aa31.06■■■□□ 2.56
VPS28-208ENST00000527797 ADGRL1O94910 1474 aa31.04■■■□□ 2.56
VPS28-208ENST00000527797 ACIN1Q9UKV3 1341 aaKnown RBP31.03■■■□□ 2.56
VPS28-208ENST00000527797 TRAPPC8Q9Y2L5 1435 aa31.02■■■□□ 2.56
VPS28-208ENST00000527797 MAST1Q9Y2H9 1570 aa31.02■■■□□ 2.56
VPS28-208ENST00000527797 CFAP74Q9C0B2 1584 aa31.02■■■□□ 2.56
VPS28-208ENST00000527797 DIP2BQ9P265 1576 aa31.02■■■□□ 2.56
VPS28-208ENST00000527797 SCAPERQ9BY12 1400 aa31.01■■■□□ 2.55
VPS28-208ENST00000527797 MAP3K4Q9Y6R4 1608 aa31■■■□□ 2.55
VPS28-208ENST00000527797 CLSPNQ9HAW4 1339 aa31■■■□□ 2.55
VPS28-208ENST00000527797 DNAJC5Q9H3Z4 198 aa30.97■■■□□ 2.55
VPS28-208ENST00000527797 NEO1Q92859 1461 aa30.96■■■□□ 2.55
VPS28-208ENST00000527797 AFAP1Q8N556 730 aa30.96■■■□□ 2.55
VPS28-208ENST00000527797 KDM6BO15054 1643 aa30.96■■■□□ 2.55
VPS28-208ENST00000527797 KIF15Q9NS87 1388 aa30.96■■■□□ 2.55
VPS28-208ENST00000527797 SPAG9O60271 1321 aaKnown RBP30.94■■■□□ 2.54
VPS28-208ENST00000527797 ANKRD50Q9ULJ7 1429 aa30.94■■■□□ 2.54
VPS28-208ENST00000527797 TRIM52Q96A61 297 aa30.93■■■□□ 2.54
VPS28-208ENST00000527797 RTEL1-TNFRSF6BF6WH68 1400 aa30.91■■■□□ 2.54
VPS28-208ENST00000527797 PLXNC1O60486 1568 aa30.88■■■□□ 2.53
VPS28-208ENST00000527797 ZNF518AQ6AHZ1 1483 aa30.85■■■□□ 2.53
VPS28-208ENST00000527797 POGZQ7Z3K3 1410 aa30.83■■■□□ 2.53
VPS28-208ENST00000527797 ZFYVE16Q7Z3T8 1539 aa30.82■■■□□ 2.52
VPS28-208ENST00000527797 TEX14Q8IWB6 1497 aa30.81■■■□□ 2.52
VPS28-208ENST00000527797 MYT1LQ9UL68 1186 aa30.81■■■□□ 2.52
VPS28-208ENST00000527797 DUOX2Q9NRD8 1548 aa30.81■■■□□ 2.52
VPS28-208ENST00000527797 DENND4BO75064 1496 aaPredicted RBP30.81■■■□□ 2.52
VPS28-208ENST00000527797 ATP7AQ04656 1500 aa30.79■■■□□ 2.52
VPS28-208ENST00000527797 MPHOSPH9Q99550 1183 aa30.78■■■□□ 2.52
VPS28-208ENST00000527797 INO80Q9ULG1 1556 aaPredicted RBP30.78■■■□□ 2.52
VPS28-208ENST00000527797 KIF13AQ9H1H9 1805 aa30.75■■■□□ 2.51
VPS28-208ENST00000527797 KDM5CP41229 1560 aa30.74■■■□□ 2.51
VPS28-208ENST00000527797 ERBINQ96RT1 1412 aa30.74■■■□□ 2.51
VPS28-208ENST00000527797 PPRC1Q5VV67 1664 aaKnown RBP30.73■■■□□ 2.51
VPS28-208ENST00000527797 RAPGEF3O95398 923 aa30.72■■■□□ 2.51
VPS28-208ENST00000527797 TSPOAP1O95153 1857 aa30.71■■■□□ 2.51
VPS28-208ENST00000527797 MLH3Q9UHC1 1453 aa30.71■■■□□ 2.51
VPS28-208ENST00000527797 SLC4A1APQ9BWU0 796 aaKnown RBP30.7■■■□□ 2.51
VPS28-208ENST00000527797 NUP155O75694 1391 aa30.7■■■□□ 2.5
VPS28-208ENST00000527797 PZPP20742 1482 aa30.67■■■□□ 2.5
VPS28-208ENST00000527797 KIDINS220Q9ULH0 1771 aa30.66■■■□□ 2.5
VPS28-208ENST00000527797 HECW2Q9P2P5 1572 aa30.65■■■□□ 2.5
VPS28-208ENST00000527797 DHX29Q7Z478 1369 aaKnown RBP30.64■■■□□ 2.5
VPS28-208ENST00000527797 KDM5DQ9BY66 1539 aa30.64■■■□□ 2.5
VPS28-208ENST00000527797 SIN3AQ96ST3 1273 aa30.62■■■□□ 2.49
VPS28-208ENST00000527797 RICTORQ6R327 1708 aa30.61■■■□□ 2.49
VPS28-208ENST00000527797 UNC13BO14795 1591 aa30.6■■■□□ 2.49
VPS28-208ENST00000527797 NEUROD1Q13562 356 aa30.58■■■□□ 2.49
VPS28-208ENST00000527797 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.58■■■□□ 2.499e-9■■■□□ 15.1
VPS28-208ENST00000527797 A2MP01023 1474 aa30.57■■■□□ 2.48
VPS28-208ENST00000527797 PKD2Q13563 968 aa30.56■■■□□ 2.48
VPS28-208ENST00000527797 FOXD1Q16676 465 aa30.56■■■□□ 2.48
VPS28-208ENST00000527797 FRMPD1Q5SYB0 1578 aa30.56■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms