RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 SOX12O15370 315 aa8.9□□□□□ -0.98
CD44-225ENST00000527326 PKD2Q13563 968 aa8.88□□□□□ -0.99
CD44-225ENST00000527326 BCL11BQ9C0K0 894 aaPredicted RBP8.88□□□□□ -0.99
CD44-225ENST00000527326 PHF8Q9UPP1 1060 aa8.87□□□□□ -0.99
CD44-225ENST00000527326 STK24Q9Y6E0 443 aa8.87□□□□□ -0.99
CD44-225ENST00000527326 TRIM26Q12899 539 aaPredicted RBP8.86□□□□□ -0.99
CD44-225ENST00000527326 STK25O00506 426 aa8.85□□□□□ -0.99
CD44-225ENST00000527326 MARVELD3Q96A59 401 aa8.85□□□□□ -0.99
CD44-225ENST00000527326 TMEM121BQ9BXQ6 578 aaPredicted RBP8.85□□□□□ -0.99
CD44-225ENST00000527326 RGL2O15211 777 aa8.84□□□□□ -0.99
CD44-225ENST00000527326 CDAN1Q8IWY9 1227 aa8.84□□□□□ -0.99
CD44-225ENST00000527326 MICALL2Q8IY33 904 aa8.83□□□□□ -1
CD44-225ENST00000527326 MS4A4AQ96JQ5 239 aa8.83□□□□□ -1
CD44-225ENST00000527326 ABCC9O60706 1549 aa8.83□□□□□ -1
CD44-225ENST00000527326 NLRP6P59044 892 aa8.82□□□□□ -1
CD44-225ENST00000527326 EMP3P54852 163 aa8.78□□□□□ -1
CD44-225ENST00000527326 FBXO22Q8NEZ5 403 aa8.77□□□□□ -1.01
CD44-225ENST00000527326 CLSPNQ9HAW4 1339 aa8.77□□□□□ -1.01
CD44-225ENST00000527326 HOXB3P14651 431 aaPredicted RBP8.76□□□□□ -1.01
CD44-225ENST00000527326 ZNF710Q8N1W2 664 aa8.76□□□□□ -1.01
CD44-225ENST00000527326 MFRPQ9BY79 579 aa8.76□□□□□ -1.01
CD44-225ENST00000527326 DOK7Q18PE1 504 aa8.75□□□□□ -1.01
CD44-225ENST00000527326 TMEM92Q6UXU6 159 aa8.75□□□□□ -1.01
CD44-225ENST00000527326 FAM205CA6NFA0 338 aa8.73□□□□□ -1.01
CD44-225ENST00000527326 DAXXQ9UER7 740 aaPredicted RBP8.73□□□□□ -1.01
CD44-225ENST00000527326 RIMBP2O15034 1052 aa8.71□□□□□ -1.02
CD44-225ENST00000527326 HOXB1P14653 301 aaPredicted RBP8.69□□□□□ -1.02
CD44-225ENST00000527326 HS3ST6Q96QI5 342 aa8.69□□□□□ -1.02
CD44-225ENST00000527326 POTEB3A0JP26 581 aa8.68□□□□□ -1.02
CD44-225ENST00000527326 PLCB2Q00722 1185 aa8.68□□□□□ -1.02
CD44-225ENST00000527326 POTEBQ6S5H4 581 aa8.68□□□□□ -1.02
CD44-225ENST00000527326 ERBB3P21860 1342 aa8.66□□□□□ -1.02
CD44-225ENST00000527326 CHGAP10645 457 aaKnown RBP8.65□□□□□ -1.02
CD44-225ENST00000527326 HS6ST3Q8IZP7 471 aa8.64□□□□□ -1.03
CD44-225ENST00000527326 ZSWIM6Q9HCJ5 1215 aa8.64□□□□□ -1.03
CD44-225ENST00000527326 PPP1R37O75864 691 aa8.63□□□□□ -1.03
CD44-225ENST00000527326 MYT1LQ9UL68 1186 aa8.63□□□□□ -1.03
CD44-225ENST00000527326 C2orf72A6NCS6 295 aa8.62□□□□□ -1.03
CD44-225ENST00000527326 EIF5BO60841 1220 aaKnown RBP8.62□□□□□ -1.03
CD44-225ENST00000527326 DIEXFQ68CQ4 756 aaKnown RBP8.62□□□□□ -1.03
CD44-225ENST00000527326 SPNS2Q8IVW8 549 aa8.62□□□□□ -1.03
CD44-225ENST00000527326 UBE2Q2Q8WVN8 375 aa8.62□□□□□ -1.03
CD44-225ENST00000527326 ARSIQ5FYB1 569 aa8.61□□□□□ -1.03
CD44-225ENST00000527326 GPR153Q6NV75 609 aa8.61□□□□□ -1.03
CD44-225ENST00000527326 TMC2Q8TDI7 906 aa8.61□□□□□ -1.03
CD44-225ENST00000527326 VARS2Q5ST30 1063 aaKnown RBP8.6□□□□□ -1.03
CD44-225ENST00000527326 KIF3CO14782 793 aa8.59□□□□□ -1.03
CD44-225ENST00000527326 KRTAP3-3Q9BYR6 98 aa8.59□□□□□ -1.03
CD44-225ENST00000527326 KRTAP3-2Q9BYR7 98 aa8.59□□□□□ -1.03
CD44-225ENST00000527326 MMRN1Q13201 1228 aa8.57□□□□□ -1.04
CD44-225ENST00000527326 DCAF8L2P0C7V8 631 aa8.56□□□□□ -1.04
CD44-225ENST00000527326 HAP1P54257 671 aaPredicted RBP8.56□□□□□ -1.04
CD44-225ENST00000527326 ERICH6BQ5W0A0 696 aa8.56□□□□□ -1.04
CD44-225ENST00000527326 KHSRPQ92945 711 aaKnown RBP eCLIP8.56□□□□□ -1.04
CD44-225ENST00000527326 TSHZ2Q9NRE2 1034 aa8.56□□□□□ -1.04
CD44-225ENST00000527326 NKX1-1Q15270 411 aaPredicted RBP8.53□□□□□ -1.04
CD44-225ENST00000527326 ZNF316A6NFI3 1004 aaPredicted RBP8.51□□□□□ -1.05
CD44-225ENST00000527326 ZNF687Q8N1G0 1237 aa8.51□□□□□ -1.05
CD44-225ENST00000527326 SLC34A2O95436 690 aa8.5□□□□□ -1.05
CD44-225ENST00000527326 NUDT7P0C024 238 aa8.5□□□□□ -1.05
CD44-225ENST00000527326 DNAJC5Q9H3Z4 198 aa8.5□□□□□ -1.05
CD44-225ENST00000527326 RYDENQ9NUL5 291 aaKnown RBP8.5□□□□□ -1.05
CD44-225ENST00000527326 PCDHGA4Q9Y5G9 962 aa8.5□□□□□ -1.05
CD44-225ENST00000527326 RB1CC1Q8TDY2 1594 aa8.49□□□□□ -1.05
CD44-225ENST00000527326 GPHNQ9NQX3 736 aaPredicted RBP8.48□□□□□ -1.05
CD44-225ENST00000527326 PLPP6Q8IY26 295 aa8.47□□□□□ -1.05
CD44-225ENST00000527326 ANO8Q9HCE9 1232 aaPredicted RBP8.47□□□□□ -1.05
CD44-225ENST00000527326 FOXK1P85037 733 aa8.45□□□□□ -1.06
CD44-225ENST00000527326 LHX6Q9UPM6 363 aa8.45□□□□□ -1.06
CD44-225ENST00000527326 SUPT16HQ9Y5B9 1047 aaKnown RBP8.45□□□□□ -1.06
CD44-225ENST00000527326 SUPT5HO00267 1087 aaKnown RBP8.44□□□□□ -1.06
CD44-225ENST00000527326 DSG2Q14126 1118 aa8.44□□□□□ -1.06
CD44-225ENST00000527326 ANKRD13DQ6ZTN6 518 aa8.43□□□□□ -1.06
CD44-225ENST00000527326 VSIG10Q8N0Z9 540 aa8.42□□□□□ -1.06
CD44-225ENST00000527326 PTCD2Q8WV60 388 aaKnown RBP8.42□□□□□ -1.06
CD44-225ENST00000527326 BCANQ96GW7 911 aa8.42□□□□□ -1.06
CD44-225ENST00000527326 GTPBP6O43824 516 aaPredicted RBP8.41□□□□□ -1.06
CD44-225ENST00000527326 TBC1D12O60347 775 aa8.4□□□□□ -1.06
CD44-225ENST00000527326 NACADO15069 1562 aa8.39□□□□□ -1.07
CD44-225ENST00000527326 LSM11P83369 360 aaKnown RBP eCLIP8.38□□□□□ -1.07
CD44-225ENST00000527326 YTHDC1Q96MU7 727 aaKnown RBP8.38□□□□□ -1.07
CD44-225ENST00000527326 AXIN2Q9Y2T1 843 aa8.38□□□□□ -1.07
CD44-225ENST00000527326 PSDA5PKW4 1024 aaPredicted RBP8.37□□□□□ -1.07
CD44-225ENST00000527326 PDE4AP27815 886 aa8.37□□□□□ -1.07
CD44-225ENST00000527326 PBX2P40425 430 aa8.37□□□□□ -1.07
CD44-225ENST00000527326 RNF166Q96A37 237 aaPredicted RBP8.37□□□□□ -1.07
CD44-225ENST00000527326 PKNOX2Q96KN3 472 aa8.37□□□□□ -1.07
CD44-225ENST00000527326 CRISPLD2Q9H0B8 497 aa8.37□□□□□ -1.07
CD44-225ENST00000527326 KDM2AQ9Y2K7 1162 aa8.37□□□□□ -1.07
CD44-225ENST00000527326 KDM4FA0A1W2PPD8 638 aa8.36□□□□□ -1.07
CD44-225ENST00000527326 BBXQ8WY36 941 aaPredicted RBP8.36□□□□□ -1.07
CD44-225ENST00000527326 PPP1R15BQ5SWA1 713 aa8.35□□□□□ -1.07
CD44-225ENST00000527326 UPF1Q92900 1129 aaKnown RBP eCLIP8.35□□□□□ -1.07
CD44-225ENST00000527326 NCKAP5LQ9HCH0 1330 aa8.34□□□□□ -1.07
CD44-225ENST00000527326 PTGER2P43116 358 aa8.34□□□□□ -1.07
CD44-225ENST00000527326 POTEEQ6S8J3 1075 aa8.34□□□□□ -1.07
CD44-225ENST00000527326 OXER1Q8TDS5 423 aa8.34□□□□□ -1.07
CD44-225ENST00000527326 LARP6Q9BRS8 491 aaKnown RBP8.34□□□□□ -1.07
CD44-225ENST00000527326 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.34□□□□□ -1.07
CD44-225ENST00000527326 PAXIP1Q6ZW49 1069 aaPredicted RBP8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms