RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 DNAJC5Q9H3Z4 198 aa28.23■■■□□ 2.11
VPS28-207ENST00000526977 PREX2Q70Z35 1606 aa28.22■■■□□ 2.11
VPS28-207ENST00000526977 ZNF777Q9ULD5 760 aaPredicted RBP28.22■■■□□ 2.11
VPS28-207ENST00000526977 ZNF644Q9H582 1327 aaPredicted RBP28.22■■■□□ 2.11
VPS28-207ENST00000526977 ABCA9Q8IUA7 1624 aa28.2■■■□□ 2.11
VPS28-207ENST00000526977 MYO5CQ9NQX4 1742 aa28.2■■■□□ 2.11
VPS28-207ENST00000526977 CAMSAP2Q08AD1 1489 aa28.19■■■□□ 2.1
VPS28-207ENST00000526977 CDC42BPBQ9Y5S2 1711 aa28.18■■■□□ 2.1
VPS28-207ENST00000526977 EFCAB2Q5VUJ9 269 aa28.17■■■□□ 2.1
VPS28-207ENST00000526977 ARHGAP5Q13017 1502 aa28.17■■■□□ 2.1
VPS28-207ENST00000526977 ARAP3Q8WWN8 1544 aa28.16■■■□□ 2.1
VPS28-207ENST00000526977 RSPH4AQ5TD94 716 aa28.11■■■□□ 2.09
VPS28-207ENST00000526977 DAPK1P53355 1430 aa28.09■■■□□ 2.09
VPS28-207ENST00000526977 PTPRKQ15262 1439 aa28.09■■■□□ 2.09
VPS28-207ENST00000526977 PLEKHH2Q8IVE3 1493 aa28.09■■■□□ 2.09
VPS28-207ENST00000526977 CD109Q6YHK3 1445 aa28.09■■■□□ 2.09
VPS28-207ENST00000526977 DNMT1P26358 1616 aaKnown RBP28.08■■■□□ 2.09
VPS28-207ENST00000526977 ABCC5O15440 1437 aa28.08■■■□□ 2.09
VPS28-207ENST00000526977 SAMD9LQ8IVG5 1584 aa28.07■■■□□ 2.08
VPS28-207ENST00000526977 KIAA1107Q9UPP5 1409 aa28.07■■■□□ 2.08
VPS28-207ENST00000526977 GLI2P10070 1586 aa28.06■■■□□ 2.08
VPS28-207ENST00000526977 HNRNPMP52272 730 aaKnown RBP eCLIP28.04■■■□□ 2.08
VPS28-207ENST00000526977 FANCAO15360 1455 aa28.03■■■□□ 2.08
VPS28-207ENST00000526977 MBD5Q9P267 1494 aa28.03■■■□□ 2.08
VPS28-207ENST00000526977 FAM69CQ0P6D2 419 aa28.02■■■□□ 2.08
VPS28-207ENST00000526977 ARHGEF5Q12774 1597 aa28.01■■■□□ 2.07
VPS28-207ENST00000526977 TSPY4P0CV99 314 aa28.01■■■□□ 2.07
VPS28-207ENST00000526977 TSPY10P0CW01 314 aa28.01■■■□□ 2.07
VPS28-207ENST00000526977 CHIC2Q9UKJ5 165 aa28.01■■■□□ 2.07
VPS28-207ENST00000526977 SETD5Q9C0A6 1442 aa28■■■□□ 2.07
VPS28-207ENST00000526977 ROCK1Q13464 1354 aa27.99■■■□□ 2.07
VPS28-207ENST00000526977 DIP2BQ9P265 1576 aa27.99■■■□□ 2.07
VPS28-207ENST00000526977 AKNAQ7Z591 1439 aa27.98■■■□□ 2.07
VPS28-207ENST00000526977 HFM1A2PYH4 1435 aa27.98■■■□□ 2.07
VPS28-207ENST00000526977 SYCP2Q9BX26 1530 aa27.97■■■□□ 2.07
VPS28-207ENST00000526977 CCDC141Q6ZP82 1450 aa27.96■■■□□ 2.07
VPS28-207ENST00000526977 SHANK2Q9UPX8 1470 aa27.95■■■□□ 2.07
VPS28-207ENST00000526977 MAP3K4Q9Y6R4 1608 aa27.95■■■□□ 2.07
VPS28-207ENST00000526977 ABCC1P33527 1531 aa27.95■■■□□ 2.06
VPS28-207ENST00000526977 ARHGEF12Q9NZN5 1544 aa27.93■■■□□ 2.06
VPS28-207ENST00000526977 CFAP74Q9C0B2 1584 aa27.92■■■□□ 2.06
VPS28-207ENST00000526977 RAB3GAP2Q9H2M9 1393 aa27.92■■■□□ 2.06
VPS28-207ENST00000526977 RRP7BPQ9NSQ0 103 aa27.92■■■□□ 2.06
VPS28-207ENST00000526977 CROCC2H7BZ55 1655 aa27.92■■■□□ 2.06
VPS28-207ENST00000526977 NAIPQ13075 1403 aa27.91■■■□□ 2.06
VPS28-207ENST00000526977 C9orf84Q5VXU9 1444 aa27.9■■■□□ 2.06
VPS28-207ENST00000526977 ADGRL1O94910 1474 aa27.9■■■□□ 2.06
VPS28-207ENST00000526977 ADGRL2O95490 1459 aa27.9■■■□□ 2.06
VPS28-207ENST00000526977 NEO1Q92859 1461 aa27.9■■■□□ 2.06
VPS28-207ENST00000526977 ANKRD30AQ9BXX3 1397 aa27.9■■■□□ 2.06
VPS28-207ENST00000526977 NCOA1Q15788 1441 aa27.89■■■□□ 2.06
VPS28-207ENST00000526977 SCAPERQ9BY12 1400 aa27.88■■■□□ 2.05
VPS28-207ENST00000526977 TRAPPC8Q9Y2L5 1435 aa27.85■■■□□ 2.05
VPS28-207ENST00000526977 ADGBQ8N7X0 1667 aa27.84■■■□□ 2.05
VPS28-207ENST00000526977 MAST1Q9Y2H9 1570 aa27.83■■■□□ 2.05
VPS28-207ENST00000526977 DHX57Q6P158 1386 aaKnown RBP27.82■■■□□ 2.04
VPS28-207ENST00000526977 AFAP1Q8N556 730 aa27.82■■■□□ 2.04
VPS28-207ENST00000526977 ACIN1Q9UKV3 1341 aaKnown RBP27.82■■■□□ 2.04
VPS28-207ENST00000526977 GCC2Q8IWJ2 1684 aa27.81■■■□□ 2.04
VPS28-207ENST00000526977 TEX14Q8IWB6 1497 aa27.8■■■□□ 2.04
VPS28-207ENST00000526977 KIF13AQ9H1H9 1805 aa27.8■■■□□ 2.04
VPS28-207ENST00000526977 SPAG9O60271 1321 aaKnown RBP27.79■■■□□ 2.04
VPS28-207ENST00000526977 RTEL1-TNFRSF6BF6WH68 1400 aa27.78■■■□□ 2.04
VPS28-207ENST00000526977 ZNF518AQ6AHZ1 1483 aa27.76■■■□□ 2.03
VPS28-207ENST00000526977 CLSPNQ9HAW4 1339 aa27.76■■■□□ 2.03
VPS28-207ENST00000526977 KIF15Q9NS87 1388 aa27.74■■■□□ 2.03
VPS28-207ENST00000526977 POGZQ7Z3K3 1410 aa27.73■■■□□ 2.03
VPS28-207ENST00000526977 DENND4BO75064 1496 aaPredicted RBP27.72■■■□□ 2.03
VPS28-207ENST00000526977 PPRC1Q5VV67 1664 aaKnown RBP27.71■■■□□ 2.03
VPS28-207ENST00000526977 ANKRD50Q9ULJ7 1429 aa27.71■■■□□ 2.03
VPS28-207ENST00000526977 PLXNC1O60486 1568 aa27.71■■■□□ 2.03
VPS28-207ENST00000526977 TSPOAP1O95153 1857 aa27.71■■■□□ 2.03
VPS28-207ENST00000526977 ZFYVE16Q7Z3T8 1539 aa27.66■■■□□ 2.02
VPS28-207ENST00000526977 MYT1LQ9UL68 1186 aa27.66■■■□□ 2.02
VPS28-207ENST00000526977 KDM5CP41229 1560 aa27.66■■■□□ 2.02
VPS28-207ENST00000526977 KDM6BO15054 1643 aa27.66■■■□□ 2.02
VPS28-207ENST00000526977 ATP7AQ04656 1500 aa27.65■■■□□ 2.02
VPS28-207ENST00000526977 RAPGEF3O95398 923 aa27.65■■■□□ 2.02
VPS28-207ENST00000526977 TRHP20396 242 aaPredicted RBP27.65■■■□□ 2.02
VPS28-207ENST00000526977 INO80Q9ULG1 1556 aaPredicted RBP27.64■■■□□ 2.02
VPS28-207ENST00000526977 MLH3Q9UHC1 1453 aa27.64■■■□□ 2.01
VPS28-207ENST00000526977 DUOX2Q9NRD8 1548 aa27.63■■■□□ 2.01
VPS28-207ENST00000526977 TRIM52Q96A61 297 aa27.63■■■□□ 2.01
VPS28-207ENST00000526977 ERBINQ96RT1 1412 aa27.59■■■□□ 2.01
VPS28-207ENST00000526977 RICTORQ6R327 1708 aa27.57■■■□□ 2
VPS28-207ENST00000526977 HECW2Q9P2P5 1572 aa27.56■■■□□ 2
VPS28-207ENST00000526977 KIDINS220Q9ULH0 1771 aa27.56■■■□□ 2
VPS28-207ENST00000526977 DHX29Q7Z478 1369 aaKnown RBP27.53■■■□□ 2
VPS28-207ENST00000526977 MPHOSPH9Q99550 1183 aa27.51■■■□□ 2
VPS28-207ENST00000526977 FRMPD1Q5SYB0 1578 aa27.5■■□□□ 1.99
VPS28-207ENST00000526977 MAGI2Q86UL8 1455 aa27.5■■□□□ 1.99
VPS28-207ENST00000526977 ZMYM4Q5VZL5 1548 aa27.49■■□□□ 1.99
VPS28-207ENST00000526977 NUP155O75694 1391 aa27.48■■□□□ 1.99
VPS28-207ENST00000526977 SLC4A1APQ9BWU0 796 aaKnown RBP27.46■■□□□ 1.99
VPS28-207ENST00000526977 A2MP01023 1474 aa27.46■■□□□ 1.99
VPS28-207ENST00000526977 COL17A1Q9UMD9 1497 aaPredicted RBP27.46■■□□□ 1.99
VPS28-207ENST00000526977 KDM5DQ9BY66 1539 aa27.44■■□□□ 1.98
VPS28-207ENST00000526977 ZNF316A6NFI3 1004 aaPredicted RBP27.43■■□□□ 1.98
VPS28-207ENST00000526977 PZPP20742 1482 aa27.41■■□□□ 1.98
VPS28-207ENST00000526977 ABCA6Q8N139 1617 aa27.41■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms