RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 MYO5CQ9NQX4 1742 aa23.91■■□□□ 1.42
CPSF1-201ENST00000526271 MAGI2Q86UL8 1455 aa23.9■■□□□ 1.42
CPSF1-201ENST00000526271 FER1L4A9Z1Z3 1794 aa23.88■■□□□ 1.41
CPSF1-201ENST00000526271 HSPA2P54652 639 aa23.87■■□□□ 1.41
CPSF1-201ENST00000526271 FMN1Q68DA7 1419 aa23.86■■□□□ 1.41
CPSF1-201ENST00000526271 CHIC1Q5VXU3 224 aa23.86■■□□□ 1.41
CPSF1-201ENST00000526271 FBXO41Q8TF61 875 aa23.86■■□□□ 1.41
CPSF1-201ENST00000526271 ARHGEF12Q9NZN5 1544 aa23.85■■□□□ 1.41
CPSF1-201ENST00000526271 UBTFP17480 764 aaKnown RBP23.83■■□□□ 1.41
CPSF1-201ENST00000526271 CDC42BPBQ9Y5S2 1711 aa23.82■■□□□ 1.4
CPSF1-201ENST00000526271 TROQ12816 1431 aaPredicted RBP23.82■■□□□ 1.4
CPSF1-201ENST00000526271 KDM5CP41229 1560 aa23.82■■□□□ 1.4
CPSF1-201ENST00000526271 MLECQ14165 292 aa23.81■■□□□ 1.4
CPSF1-201ENST00000526271 PLPPR3Q6T4P5 718 aa23.81■■□□□ 1.4
CPSF1-201ENST00000526271 ATP10AO60312 1499 aa23.81■■□□□ 1.4
CPSF1-201ENST00000526271 C9orf84Q5VXU9 1444 aa23.78■■□□□ 1.4
CPSF1-201ENST00000526271 ATP1B4Q9UN42 357 aaPredicted RBP23.78■■□□□ 1.4
CPSF1-201ENST00000526271 DIP2CQ9Y2E4 1556 aa23.77■■□□□ 1.4
CPSF1-201ENST00000526271 EFCAB2Q5VUJ9 269 aa23.76■■□□□ 1.39
CPSF1-201ENST00000526271 AFAP1Q8N556 730 aa23.75■■□□□ 1.39
CPSF1-201ENST00000526271 ARHGAP5Q13017 1502 aa23.74■■□□□ 1.39
CPSF1-201ENST00000526271 ABCA6Q8N139 1617 aa23.74■■□□□ 1.39
CPSF1-201ENST00000526271 ZNF518AQ6AHZ1 1483 aa23.73■■□□□ 1.39
CPSF1-201ENST00000526271 CEBPAP49715 358 aaPredicted RBP23.72■■□□□ 1.39
CPSF1-201ENST00000526271 PREX2Q70Z35 1606 aa23.72■■□□□ 1.39
CPSF1-201ENST00000526271 PREX1Q8TCU6 1659 aa23.7■■□□□ 1.39
CPSF1-201ENST00000526271 STRCQ7RTU9 1775 aa23.7■■□□□ 1.38
CPSF1-201ENST00000526271 REREQ9P2R6 1566 aa23.69■■□□□ 1.38
CPSF1-201ENST00000526271 ABCC1P33527 1531 aa23.69■■□□□ 1.38
CPSF1-201ENST00000526271 TRAPPC8Q9Y2L5 1435 aa23.69■■□□□ 1.38
CPSF1-201ENST00000526271 CDC42BPAQ5VT25 1732 aa23.69■■□□□ 1.38
CPSF1-201ENST00000526271 ITSN2Q9NZM3 1697 aa23.69■■□□□ 1.38
CPSF1-201ENST00000526271 CASKIN1Q8WXD9 1431 aa23.67■■□□□ 1.38
CPSF1-201ENST00000526271 MLH3Q9UHC1 1453 aa23.66■■□□□ 1.38
CPSF1-201ENST00000526271 KIDINS220Q9ULH0 1771 aa23.65■■□□□ 1.38
CPSF1-201ENST00000526271 CDK11AQ9UQ88 783 aaPredicted RBP23.65■■□□□ 1.38
CPSF1-201ENST00000526271 CLIP1P30622 1438 aa23.64■■□□□ 1.37
CPSF1-201ENST00000526271 C3P01024 1663 aa23.64■■□□□ 1.37
CPSF1-201ENST00000526271 AGLP35573 1532 aa23.6■■□□□ 1.37
CPSF1-201ENST00000526271 CCDC18Q5T9S5 1454 aa23.6■■□□□ 1.37
CPSF1-201ENST00000526271 SETD1BQ9UPS6 1966 aaKnown RBP23.59■■□□□ 1.37
CPSF1-201ENST00000526271 SAMD9LQ8IVG5 1584 aa23.58■■□□□ 1.37
CPSF1-201ENST00000526271 CERKQ8TCT0 537 aa23.57■■□□□ 1.36
CPSF1-201ENST00000526271 FYCO1Q9BQS8 1478 aa23.55■■□□□ 1.36
CPSF1-201ENST00000526271 GPATCH8Q9UKJ3 1502 aaKnown RBP23.53■■□□□ 1.36
CPSF1-201ENST00000526271 SYCP2Q9BX26 1530 aa23.51■■□□□ 1.35
CPSF1-201ENST00000526271 UHRF1BP1Q6BDS2 1440 aa23.5■■□□□ 1.35
CPSF1-201ENST00000526271 MYT1LQ9UL68 1186 aa23.45■■□□□ 1.34
CPSF1-201ENST00000526271 INO80Q9ULG1 1556 aaPredicted RBP23.44■■□□□ 1.34
CPSF1-201ENST00000526271 SUPT6HQ7KZ85 1726 aaKnown RBP23.44■■□□□ 1.34
CPSF1-201ENST00000526271 PLXNC1O60486 1568 aa23.44■■□□□ 1.34
CPSF1-201ENST00000526271 MROH2AA6NES4 1674 aa23.42■■□□□ 1.34
CPSF1-201ENST00000526271 LTBP4Q8N2S1 1624 aa23.42■■□□□ 1.34
CPSF1-201ENST00000526271 HNRNPMP52272 730 aaKnown RBP eCLIP23.41■■□□□ 1.34
CPSF1-201ENST00000526271 ATP7AQ04656 1500 aa23.4■■□□□ 1.34
CPSF1-201ENST00000526271 ZNF777Q9ULD5 760 aaPredicted RBP23.4■■□□□ 1.34
CPSF1-201ENST00000526271 PTPRTO14522 1441 aa23.4■■□□□ 1.34
CPSF1-201ENST00000526271 NCOA1Q15788 1441 aa23.38■■□□□ 1.33
CPSF1-201ENST00000526271 KIAA1107Q9UPP5 1409 aa23.37■■□□□ 1.33
CPSF1-201ENST00000526271 CLTCQ00610 1675 aaKnown RBP23.37■■□□□ 1.33
CPSF1-201ENST00000526271 TIAM1Q13009 1591 aa23.36■■□□□ 1.33
CPSF1-201ENST00000526271 CNTLNQ9NXG0 1405 aa23.36■■□□□ 1.33
CPSF1-201ENST00000526271 SPAG9O60271 1321 aaKnown RBP23.34■■□□□ 1.33
CPSF1-201ENST00000526271 ZMYM3Q14202 1370 aa23.34■■□□□ 1.33
CPSF1-201ENST00000526271 ZNF644Q9H582 1327 aaPredicted RBP23.33■■□□□ 1.33
CPSF1-201ENST00000526271 MBD5Q9P267 1494 aa23.33■■□□□ 1.33
CPSF1-201ENST00000526271 CAMSAP1Q5T5Y3 1602 aa23.33■■□□□ 1.32
CPSF1-201ENST00000526271 NPATQ14207 1427 aa23.33■■□□□ 1.32
CPSF1-201ENST00000526271 A2MP01023 1474 aa23.32■■□□□ 1.32
CPSF1-201ENST00000526271 DMRT2Q9Y5R5 561 aa23.31■■□□□ 1.32
CPSF1-201ENST00000526271 MYO3AQ8NEV4 1616 aa23.3■■□□□ 1.32
CPSF1-201ENST00000526271 ZNF142P52746 1687 aaPredicted RBP23.3■■□□□ 1.32
CPSF1-201ENST00000526271 PTPRKQ15262 1439 aa23.29■■□□□ 1.32
CPSF1-201ENST00000526271 CFDP1Q9UEE9 299 aaPredicted RBP23.29■■□□□ 1.32
CPSF1-201ENST00000526271 CCNB3Q8WWL7 1395 aa23.28■■□□□ 1.32
CPSF1-201ENST00000526271 PLEKHH2Q8IVE3 1493 aa23.28■■□□□ 1.32
CPSF1-201ENST00000526271 ADGBQ8N7X0 1667 aa23.27■■□□□ 1.32
CPSF1-201ENST00000526271 ESF1Q9H501 851 aaKnown RBP23.25■■□□□ 1.31
CPSF1-201ENST00000526271 MTUS2Q5JR59 1369 aa23.25■■□□□ 1.31
CPSF1-201ENST00000526271 EHBP1L1Q8N3D4 1523 aa23.24■■□□□ 1.31
CPSF1-201ENST00000526271 CEP170BQ9Y4F5 1589 aaPredicted RBP23.23■■□□□ 1.31
CPSF1-201ENST00000526271 ILDR2Q71H61 639 aa23.23■■□□□ 1.31
CPSF1-201ENST00000526271 NCKAP5LQ9HCH0 1330 aa23.22■■□□□ 1.31
CPSF1-201ENST00000526271 CEP162Q5TB80 1403 aa23.21■■□□□ 1.31
CPSF1-201ENST00000526271 TCOF1Q13428 1488 aaKnown RBP23.21■■□□□ 1.31
CPSF1-201ENST00000526271 GGT6Q6P531 493 aa23.18■■□□□ 1.3
CPSF1-201ENST00000526271 PLA2R1Q13018 1463 aa23.17■■□□□ 1.3
CPSF1-201ENST00000526271 IQSEC2Q5JU85 1478 aa23.17■■□□□ 1.3
CPSF1-201ENST00000526271 ZNF335Q9H4Z2 1342 aaPredicted RBP23.17■■□□□ 1.3
CPSF1-201ENST00000526271 RTEL1-TNFRSF6BF6WH68 1400 aa23.16■■□□□ 1.3
CPSF1-201ENST00000526271 DNMT1P26358 1616 aaKnown RBP23.15■■□□□ 1.3
CPSF1-201ENST00000526271 NCOA2Q15596 1464 aa23.14■■□□□ 1.29
CPSF1-201ENST00000526271 DHX29Q7Z478 1369 aaKnown RBP23.14■■□□□ 1.29
CPSF1-201ENST00000526271 CAMSAP2Q08AD1 1489 aa23.12■■□□□ 1.29
CPSF1-201ENST00000526271 DISP3Q9P2K9 1392 aa23.12■■□□□ 1.29
CPSF1-201ENST00000526271 NEURL4Q96JN8 1562 aa23.11■■□□□ 1.29
CPSF1-201ENST00000526271 A2ML1A8K2U0 1454 aa23.11■■□□□ 1.29
CPSF1-201ENST00000526271 CCDC141Q6ZP82 1450 aa23.1■■□□□ 1.29
CPSF1-201ENST00000526271 SPATA31D1Q6ZQQ2 1576 aa23.1■■□□□ 1.29
CPSF1-201ENST00000526271 FBXO31Q5XUX0 539 aaPredicted RBP23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms