RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 MTUS2Q5JR59 1369 aa33.31■■■□□ 2.92
VPS28-203ENST00000524521 CDC42BPBQ9Y5S2 1711 aa33.29■■■□□ 2.92
VPS28-203ENST00000524521 POGZQ7Z3K3 1410 aa33.28■■■□□ 2.92
VPS28-203ENST00000524521 ARID4BQ4LE39 1312 aaPredicted RBP33.27■■■□□ 2.92
VPS28-203ENST00000524521 PREX2Q70Z35 1606 aa33.25■■■□□ 2.91
VPS28-203ENST00000524521 ZMYM4Q5VZL5 1548 aa33.24■■■□□ 2.91
VPS28-203ENST00000524521 ARHGEF40Q8TER5 1519 aa33.22■■■□□ 2.91
VPS28-203ENST00000524521 MAGI2Q86UL8 1455 aa33.21■■■□□ 2.91
VPS28-203ENST00000524521 AFAP1Q8N556 730 aa33.21■■■□□ 2.91
VPS28-203ENST00000524521 CDC42BPAQ5VT25 1732 aa33.21■■■□□ 2.91
VPS28-203ENST00000524521 YEATS2Q9ULM3 1422 aa33.2■■■□□ 2.91
VPS28-203ENST00000524521 ZFYVE16Q7Z3T8 1539 aa33.2■■■□□ 2.91
VPS28-203ENST00000524521 ZNF777Q9ULD5 760 aaPredicted RBP33.2■■■□□ 2.91
VPS28-203ENST00000524521 VPS8Q8N3P4 1428 aa33.19■■■□□ 2.9
VPS28-203ENST00000524521 CCNB3Q8WWL7 1395 aa33.18■■■□□ 2.9
VPS28-203ENST00000524521 GPATCH8Q9UKJ3 1502 aaKnown RBP33.18■■■□□ 2.9
VPS28-203ENST00000524521 ZNF518AQ6AHZ1 1483 aa33.17■■■□□ 2.9
VPS28-203ENST00000524521 MYT1LQ9UL68 1186 aa33.16■■■□□ 2.9
VPS28-203ENST00000524521 CFDP1Q9UEE9 299 aaPredicted RBP33.14■■■□□ 2.9
VPS28-203ENST00000524521 EHBP1L1Q8N3D4 1523 aa33.13■■■□□ 2.89
VPS28-203ENST00000524521 ABCC1P33527 1531 aa33.11■■■□□ 2.89
VPS28-203ENST00000524521 ARHGEF12Q9NZN5 1544 aa33.11■■■□□ 2.89
VPS28-203ENST00000524521 TRAPPC8Q9Y2L5 1435 aa33.1■■■□□ 2.89
VPS28-203ENST00000524521 ATP10AO60312 1499 aa33.07■■■□□ 2.88
VPS28-203ENST00000524521 KDM5CP41229 1560 aa33.07■■■□□ 2.88
VPS28-203ENST00000524521 BCORL1Q5H9F3 1711 aa33.06■■■□□ 2.88
VPS28-203ENST00000524521 TIAM1Q13009 1591 aa33.06■■■□□ 2.88
VPS28-203ENST00000524521 ADAMTSL3P82987 1691 aa33.06■■■□□ 2.88
VPS28-203ENST00000524521 ITSN2Q9NZM3 1697 aa33.05■■■□□ 2.88
VPS28-203ENST00000524521 HNRNPMP52272 730 aaKnown RBP eCLIP33.05■■■□□ 2.88
VPS28-203ENST00000524521 SAMD9LQ8IVG5 1584 aa33.04■■■□□ 2.88
VPS28-203ENST00000524521 MLECQ14165 292 aa33.01■■■□□ 2.87
VPS28-203ENST00000524521 HECW2Q9P2P5 1572 aa33■■■□□ 2.87
VPS28-203ENST00000524521 C9orf84Q5VXU9 1444 aa33■■■□□ 2.87
VPS28-203ENST00000524521 SIGLEC1Q9BZZ2 1709 aa32.99■■■□□ 2.87
VPS28-203ENST00000524521 MLH3Q9UHC1 1453 aa32.99■■■□□ 2.87
VPS28-203ENST00000524521 SYCP2Q9BX26 1530 aa32.98■■■□□ 2.87
VPS28-203ENST00000524521 NCOA2Q15596 1464 aa32.98■■■□□ 2.87
VPS28-203ENST00000524521 SUPT6HQ7KZ85 1726 aaKnown RBP32.97■■■□□ 2.87
VPS28-203ENST00000524521 PLEKHH2Q8IVE3 1493 aa32.97■■■□□ 2.87
VPS28-203ENST00000524521 PTPRMP28827 1452 aa32.96■■■□□ 2.87
VPS28-203ENST00000524521 ZNF644Q9H582 1327 aaPredicted RBP32.96■■■□□ 2.87
VPS28-203ENST00000524521 MADDQ8WXG6 1647 aa32.95■■■□□ 2.87
VPS28-203ENST00000524521 KIAA1107Q9UPP5 1409 aa32.95■■■□□ 2.87
VPS28-203ENST00000524521 LRRC9Q6ZRR7 1453 aa32.95■■■□□ 2.87
VPS28-203ENST00000524521 KANK4Q5T7N3 995 aaPredicted RBP32.94■■■□□ 2.86
VPS28-203ENST00000524521 DIP2CQ9Y2E4 1556 aa32.92■■■□□ 2.86
VPS28-203ENST00000524521 APLP2Q06481 763 aa32.92■■■□□ 2.86
VPS28-203ENST00000524521 SPAG9O60271 1321 aaKnown RBP32.92■■■□□ 2.86
VPS28-203ENST00000524521 MAP3K1Q13233 1512 aa32.92■■■□□ 2.86
VPS28-203ENST00000524521 ABCA6Q8N139 1617 aa32.89■■■□□ 2.86
VPS28-203ENST00000524521 KIDINS220Q9ULH0 1771 aa32.88■■■□□ 2.85
VPS28-203ENST00000524521 RIMS1Q86UR5 1692 aaKnown RBP32.87■■■□□ 2.85
VPS28-203ENST00000524521 PLPPR3Q6T4P5 718 aa32.84■■■□□ 2.85
VPS28-203ENST00000524521 REREQ9P2R6 1566 aa32.81■■■□□ 2.84
VPS28-203ENST00000524521 MBD5Q9P267 1494 aa32.8■■■□□ 2.84
VPS28-203ENST00000524521 ATP7AQ04656 1500 aa32.77■■■□□ 2.84
VPS28-203ENST00000524521 FER1L4A9Z1Z3 1794 aa32.77■■■□□ 2.84
VPS28-203ENST00000524521 CAMSAP2Q08AD1 1489 aa32.76■■■□□ 2.84
VPS28-203ENST00000524521 AGLP35573 1532 aa32.74■■■□□ 2.83
VPS28-203ENST00000524521 RSPH4AQ5TD94 716 aa32.73■■■□□ 2.83
VPS28-203ENST00000524521 INO80Q9ULG1 1556 aaPredicted RBP32.73■■■□□ 2.83
VPS28-203ENST00000524521 ESF1Q9H501 851 aaKnown RBP32.69■■■□□ 2.82
VPS28-203ENST00000524521 MYOM3Q5VTT5 1437 aa32.68■■■□□ 2.82
VPS28-203ENST00000524521 CCDC141Q6ZP82 1450 aa32.67■■■□□ 2.82
VPS28-203ENST00000524521 RTEL1-TNFRSF6BF6WH68 1400 aa32.67■■■□□ 2.82
VPS28-203ENST00000524521 A2MP01023 1474 aa32.67■■■□□ 2.82
VPS28-203ENST00000524521 CEBPAP49715 358 aaPredicted RBP32.66■■■□□ 2.82
VPS28-203ENST00000524521 TSPY4P0CV99 314 aa32.64■■■□□ 2.82
VPS28-203ENST00000524521 TSPY10P0CW01 314 aa32.64■■■□□ 2.82
VPS28-203ENST00000524521 MIA2Q96PC5 1412 aa32.63■■■□□ 2.81
VPS28-203ENST00000524521 ARHGEF5Q12774 1597 aa32.6■■■□□ 2.81
VPS28-203ENST00000524521 ADGBQ8N7X0 1667 aa32.59■■■□□ 2.81
VPS28-203ENST00000524521 PLXNC1O60486 1568 aa32.57■■■□□ 2.8
VPS28-203ENST00000524521 GGT6Q6P531 493 aa32.56■■■□□ 2.8
VPS28-203ENST00000524521 DHX29Q7Z478 1369 aaKnown RBP32.55■■■□□ 2.8
VPS28-203ENST00000524521 LMTK3Q96Q04 1460 aa32.54■■■□□ 2.8
VPS28-203ENST00000524521 CNTLNQ9NXG0 1405 aa32.51■■■□□ 2.8
VPS28-203ENST00000524521 HSPA2P54652 639 aa32.48■■■□□ 2.79
VPS28-203ENST00000524521 KIF3BO15066 747 aa32.47■■■□□ 2.79
VPS28-203ENST00000524521 C3P01024 1663 aa32.46■■■□□ 2.79
VPS28-203ENST00000524521 FGD6Q6ZV73 1430 aa32.45■■■□□ 2.79
VPS28-203ENST00000524521 PTPN23Q9H3S7 1636 aa32.45■■■□□ 2.79
VPS28-203ENST00000524521 PPP6R1Q9UPN7 881 aa32.43■■■□□ 2.78
VPS28-203ENST00000524521 ZMYM3Q14202 1370 aa32.43■■■□□ 2.78
VPS28-203ENST00000524521 MAST1Q9Y2H9 1570 aa32.41■■■□□ 2.78
VPS28-203ENST00000524521 SETD1BQ9UPS6 1966 aaKnown RBP32.4■■■□□ 2.78
VPS28-203ENST00000524521 CLTCQ00610 1675 aaKnown RBP32.39■■■□□ 2.78
VPS28-203ENST00000524521 PREX1Q8TCU6 1659 aa32.39■■■□□ 2.78
VPS28-203ENST00000524521 MROH2AA6NES4 1674 aa32.37■■■□□ 2.77
VPS28-203ENST00000524521 TCOF1Q13428 1488 aaKnown RBP32.37■■■□□ 2.77
VPS28-203ENST00000524521 ABCC5O15440 1437 aa32.36■■■□□ 2.77
VPS28-203ENST00000524521 UHRF1BP1Q6BDS2 1440 aa32.35■■■□□ 2.77
VPS28-203ENST00000524521 FAM50AQ14320 339 aaKnown RBP32.32■■■□□ 2.76
VPS28-203ENST00000524521 DAPK1P53355 1430 aa32.32■■■□□ 2.76
VPS28-203ENST00000524521 PPARGC1BQ86YN6 1023 aaKnown RBP32.31■■■□□ 2.76
VPS28-203ENST00000524521 WASHC2CQ9Y4E1 1318 aa32.29■■■□□ 2.76
VPS28-203ENST00000524521 RRP7BPQ9NSQ0 103 aa32.29■■■□□ 2.76
VPS28-203ENST00000524521 CHIC2Q9UKJ5 165 aa32.29■■■□□ 2.76
VPS28-203ENST00000524521 NPATQ14207 1427 aa32.28■■■□□ 2.76
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms