RNA–Protein interactions for RNA: ENST00000524033.5

SPIDR-223, Transcript of scaffold protein involved in DNA repair, human

TSL 2

Gene SPIDR, Length 1,023 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-223	ENST00000524033	KDM4F	A0A1W2PPD8	638 aa		11.94	□□□□□ -0.5
SPIDR-223	ENST00000524033	RANGAP1	P46060	587 aa	Predicted RBP	11.94	□□□□□ -0.5
SPIDR-223	ENST00000524033	GLI2	P10070	1586 aa		11.93	□□□□□ -0.5
SPIDR-223	ENST00000524033	ARID3C	A6NKF2	412 aa		11.93	□□□□□ -0.5
SPIDR-223	ENST00000524033	KDM6B	O15054	1643 aa		11.93	□□□□□ -0.5
SPIDR-223	ENST00000524033	VASP	P50552	380 aa	Predicted RBP	11.91	□□□□□ -0.5
SPIDR-223	ENST00000524033	WDR7	Q9Y4E6	1490 aa		11.9	□□□□□ -0.5
SPIDR-223	ENST00000524033	CD109	Q6YHK3	1445 aa		11.89	□□□□□ -0.51
SPIDR-223	ENST00000524033	SSUH2	Q9Y2M2	353 aa		11.89	□□□□□ -0.51
SPIDR-223	ENST00000524033	TEX14	Q8IWB6	1497 aa		11.89	□□□□□ -0.51
SPIDR-223	ENST00000524033	COL17A1	Q9UMD9	1497 aa	Predicted RBP	11.89	□□□□□ -0.51
SPIDR-223	ENST00000524033	ZCCHC11	Q5TAX3	1644 aa	Known RBP	11.88	□□□□□ -0.51
SPIDR-223	ENST00000524033	TSPOAP1	O95153	1857 aa		11.87	□□□□□ -0.51
SPIDR-223	ENST00000524033	ABCA8	O94911	1581 aa		11.87	□□□□□ -0.51
SPIDR-223	ENST00000524033	ATP10B	O94823	1461 aa		11.86	□□□□□ -0.51
SPIDR-223	ENST00000524033	CTTNBP2	Q8WZ74	1663 aa		11.84	□□□□□ -0.51
SPIDR-223	ENST00000524033	UBTF	P17480	764 aa	Known RBP	11.83	□□□□□ -0.52
SPIDR-223	ENST00000524033	MAP3K4	Q9Y6R4	1608 aa		11.82	□□□□□ -0.52
SPIDR-223	ENST00000524033	MAGI3	Q5TCQ9	1506 aa		11.82	□□□□□ -0.52
SPIDR-223	ENST00000524033	PLEKHD1	A6NEE1	506 aa		11.82	□□□□□ -0.52
SPIDR-223	ENST00000524033	RBM42	Q9BTD8	480 aa	Known RBP	11.82	□□□□□ -0.52
SPIDR-223	ENST00000524033	STAG3	Q9UJ98	1225 aa		11.81	□□□□□ -0.52
SPIDR-223	ENST00000524033	PPRC1	Q5VV67	1664 aa	Known RBP	11.81	□□□□□ -0.52
SPIDR-223	ENST00000524033	FHOD3	Q2V2M9	1422 aa		11.79	□□□□□ -0.52
SPIDR-223	ENST00000524033	CCER1	Q8TC90	406 aa	Predicted RBP	11.79	□□□□□ -0.52
SPIDR-223	ENST00000524033	ACIN1	Q9UKV3	1341 aa	Known RBP	11.79	□□□□□ -0.52
SPIDR-223	ENST00000524033	KLHL34	Q8N239	644 aa		11.78	□□□□□ -0.52
SPIDR-223	ENST00000524033	PLCD3	Q8N3E9	789 aa		11.78	□□□□□ -0.52
SPIDR-223	ENST00000524033	SAMD9	Q5K651	1589 aa		11.77	□□□□□ -0.53
SPIDR-223	ENST00000524033	RAPGEF3	O95398	923 aa		11.77	□□□□□ -0.53
SPIDR-223	ENST00000524033	ATP1B4	Q9UN42	357 aa	Predicted RBP	11.77	□□□□□ -0.53
SPIDR-223	ENST00000524033	PHLDB1	Q86UU1	1377 aa		11.77	□□□□□ -0.53
SPIDR-223	ENST00000524033	ADGRL1	O94910	1474 aa		11.76	□□□□□ -0.53
SPIDR-223	ENST00000524033	NUP153	P49790	1475 aa	Known RBP	11.75	□□□□□ -0.53
SPIDR-223	ENST00000524033	PLEKHG5	O94827	1062 aa		11.73	□□□□□ -0.53
SPIDR-223	ENST00000524033	VPS8	Q8N3P4	1428 aa		11.73	□□□□□ -0.53
SPIDR-223	ENST00000524033	ARAP3	Q8WWN8	1544 aa		11.73	□□□□□ -0.53
SPIDR-223	ENST00000524033	CFAP43	Q8NDM7	1665 aa		11.72	□□□□□ -0.53
SPIDR-223	ENST00000524033	RAPGEF6	Q8TEU7	1601 aa		11.72	□□□□□ -0.53
SPIDR-223	ENST00000524033	NEUROD1	Q13562	356 aa		11.72	□□□□□ -0.53
SPIDR-223	ENST00000524033	MIER1	Q8N108	512 aa		11.72	□□□□□ -0.53
SPIDR-223	ENST00000524033	IFNLR1	Q8IU57	520 aa	Predicted RBP	11.71	□□□□□ -0.53
SPIDR-223	ENST00000524033	DIEXF	Q68CQ4	756 aa	Known RBP	11.7	□□□□□ -0.54
SPIDR-223	ENST00000524033	CDK11A	Q9UQ88	783 aa	Predicted RBP	11.7	□□□□□ -0.54
SPIDR-223	ENST00000524033	EFCAB5	A4FU69	1503 aa		11.7	□□□□□ -0.54
SPIDR-223	ENST00000524033	NEO1	Q92859	1461 aa		11.7	□□□□□ -0.54
SPIDR-223	ENST00000524033	AKT1S1	Q96B36	256 aa		11.69	□□□□□ -0.54
SPIDR-223	ENST00000524033	CLIP1	P30622	1438 aa		11.69	□□□□□ -0.54
SPIDR-223	ENST00000524033	ARID4B	Q4LE39	1312 aa	Predicted RBP	11.68	□□□□□ -0.54
SPIDR-223	ENST00000524033	FMN1	Q68DA7	1419 aa		11.68	□□□□□ -0.54
SPIDR-223	ENST00000524033	ABCA9	Q8IUA7	1624 aa		11.68	□□□□□ -0.54
SPIDR-223	ENST00000524033	CLEC11A	Q9Y240	323 aa		11.66	□□□□□ -0.54
SPIDR-223	ENST00000524033	AKNA	Q7Z591	1439 aa		11.66	□□□□□ -0.54
SPIDR-223	ENST00000524033	ZNF316	A6NFI3	1004 aa	Predicted RBP	11.65	□□□□□ -0.54
SPIDR-223	ENST00000524033	SPDYE1	Q8NFV5	336 aa	Predicted RBP	11.65	□□□□□ -0.54
SPIDR-223	ENST00000524033	CENPB	P07199	599 aa	Predicted RBP	11.64	□□□□□ -0.55
SPIDR-223	ENST00000524033	FANCA	O15360	1455 aa		11.63	□□□□□ -0.55
SPIDR-223	ENST00000524033	DENND4B	O75064	1496 aa	Predicted RBP	11.63	□□□□□ -0.55
SPIDR-223	ENST00000524033	ARHGAP35	Q9NRY4	1499 aa		11.63	□□□□□ -0.55
SPIDR-223	ENST00000524033	EFCAB2	Q5VUJ9	269 aa		11.63	□□□□□ -0.55
SPIDR-223	ENST00000524033	CDK13	Q14004	1512 aa	Known RBP	11.62	□□□□□ -0.55
SPIDR-223	ENST00000524033	PLCH2	O75038	1416 aa		11.61	□□□□□ -0.55
SPIDR-223	ENST00000524033	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	11.61	□□□□□ -0.55
SPIDR-223	ENST00000524033	SPOCK2	Q92563	424 aa		11.61	□□□□□ -0.55
SPIDR-223	ENST00000524033	ZBTB47	Q9UFB7	747 aa	Predicted RBP	11.59	□□□□□ -0.55
SPIDR-223	ENST00000524033	SCAPER	Q9BY12	1400 aa		11.59	□□□□□ -0.55
SPIDR-223	ENST00000524033	REM2	Q8IYK8	340 aa	Predicted RBP	11.57	□□□□□ -0.56
SPIDR-223	ENST00000524033	AFAP1	Q8N556	730 aa		11.57	□□□□□ -0.56
SPIDR-223	ENST00000524033	GTF3C3	Q9Y5Q9	886 aa		11.57	□□□□□ -0.56
SPIDR-223	ENST00000524033	TRO	Q12816	1431 aa	Predicted RBP	11.56	□□□□□ -0.56
SPIDR-223	ENST00000524033	MLEC	Q14165	292 aa		11.56	□□□□□ -0.56
SPIDR-223	ENST00000524033	MYT1L	Q9UL68	1186 aa		11.56	□□□□□ -0.56
SPIDR-223	ENST00000524033	PTPRM	P28827	1452 aa		11.56	□□□□□ -0.56
SPIDR-223	ENST00000524033	PRR29	P0C7W0	189 aa		11.55	□□□□□ -0.56
SPIDR-223	ENST00000524033	ILDR1	Q86SU0	546 aa	Predicted RBP	11.55	□□□□□ -0.56
SPIDR-223	ENST00000524033	MAGI2	Q86UL8	1455 aa		11.55	□□□□□ -0.56
SPIDR-223	ENST00000524033	FRMPD1	Q5SYB0	1578 aa		11.54	□□□□□ -0.56
SPIDR-223	ENST00000524033	TTC37	Q6PGP7	1564 aa		11.54	□□□□□ -0.56
SPIDR-223	ENST00000524033	HECW2	Q9P2P5	1572 aa		11.54	□□□□□ -0.56
SPIDR-223	ENST00000524033	POGZ	Q7Z3K3	1410 aa		11.54	□□□□□ -0.56
SPIDR-223	ENST00000524033	CASKIN1	Q8WXD9	1431 aa		11.54	□□□□□ -0.56
SPIDR-223	ENST00000524033	YEATS2	Q9ULM3	1422 aa		11.54	□□□□□ -0.56
SPIDR-223	ENST00000524033	HECW1	Q76N89	1606 aa		11.54	□□□□□ -0.56
SPIDR-223	ENST00000524033	CLSPN	Q9HAW4	1339 aa		11.54	□□□□□ -0.56
SPIDR-223	ENST00000524033	RRBP1	Q9P2E9	1410 aa	Known RBP	11.52	□□□□□ -0.56
SPIDR-223	ENST00000524033	CFAP74	Q9C0B2	1584 aa		11.52	□□□□□ -0.57
SPIDR-223	ENST00000524033	ATP10A	O60312	1499 aa		11.51	□□□□□ -0.57
SPIDR-223	ENST00000524033	DHX57	Q6P158	1386 aa	Known RBP	11.5	□□□□□ -0.57
SPIDR-223	ENST00000524033	ZFYVE16	Q7Z3T8	1539 aa		11.5	□□□□□ -0.57
SPIDR-223	ENST00000524033	ZNF777	Q9ULD5	760 aa	Predicted RBP	11.49	□□□□□ -0.57
SPIDR-223	ENST00000524033	CCDC18	Q5T9S5	1454 aa		11.49	□□□□□ -0.57
SPIDR-223	ENST00000524033	ARHGAP5	Q13017	1502 aa		11.49	□□□□□ -0.57
SPIDR-223	ENST00000524033	ZMYM4	Q5VZL5	1548 aa		11.49	□□□□□ -0.57
SPIDR-223	ENST00000524033	ARHGEF40	Q8TER5	1519 aa		11.49	□□□□□ -0.57
SPIDR-223	ENST00000524033	ADAMTSL3	P82987	1691 aa		11.49	□□□□□ -0.57
SPIDR-223	ENST00000524033	ZNF518A	Q6AHZ1	1483 aa		11.48	□□□□□ -0.57
SPIDR-223	ENST00000524033	RICTOR	Q6R327	1708 aa		11.47	□□□□□ -0.57
SPIDR-223	ENST00000524033	KIF14	Q15058	1648 aa		11.47	□□□□□ -0.57
SPIDR-223	ENST00000524033	MAP3K1	Q13233	1512 aa		11.46	□□□□□ -0.57
SPIDR-223	ENST00000524033	HSPA2	P54652	639 aa		11.46	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 117.1 ms