RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 NUP155O75694 1391 aa20.92■□□□□ 0.94
PCDHA3-201ENST00000522353 PAK3O75914 559 aaPredicted RBP20.92■□□□□ 0.94
PCDHA3-201ENST00000522353 CSB-PGBD3P0DP91 1061 aa20.91■□□□□ 0.94
PCDHA3-201ENST00000522353 FGD1P98174 961 aa20.9■□□□□ 0.94
PCDHA3-201ENST00000522353 SPAG9O60271 1321 aaKnown RBP20.9■□□□□ 0.94
PCDHA3-201ENST00000522353 JPH4Q96JJ6 628 aa20.89■□□□□ 0.93
PCDHA3-201ENST00000522353 SUPT16HQ9Y5B9 1047 aaKnown RBP20.88■□□□□ 0.93
PCDHA3-201ENST00000522353 KCNJ4P48050 445 aa20.88■□□□□ 0.93
PCDHA3-201ENST00000522353 CHMP4AQ9BY43 222 aa20.87■□□□□ 0.93
PCDHA3-201ENST00000522353 WASHC2CQ9Y4E1 1318 aa20.86■□□□□ 0.93
PCDHA3-201ENST00000522353 TRIM44Q96DX7 344 aaPredicted RBP20.85■□□□□ 0.93
PCDHA3-201ENST00000522353 CALD1Q05682 793 aaKnown RBP20.84■□□□□ 0.93
PCDHA3-201ENST00000522353 EIF3AQ14152 1382 aaKnown RBP20.83■□□□□ 0.92
PCDHA3-201ENST00000522353 PPP4R2Q9NY27 417 aa20.82■□□□□ 0.92
PCDHA3-201ENST00000522353 MPHOSPH9Q99550 1183 aa20.82■□□□□ 0.92
PCDHA3-201ENST00000522353 RGS3P49796 1198 aa20.81■□□□□ 0.92
PCDHA3-201ENST00000522353 KTN1Q86UP2 1357 aaKnown RBP20.81■□□□□ 0.92
PCDHA3-201ENST00000522353 ROCK2O75116 1388 aaKnown RBP20.8■□□□□ 0.92
PCDHA3-201ENST00000522353 HNRNPMP52272 730 aaKnown RBP eCLIP20.79■□□□□ 0.92
PCDHA3-201ENST00000522353 TERF2IPQ9NYB0 399 aa20.79■□□□□ 0.92
PCDHA3-201ENST00000522353 KANK4Q5T7N3 995 aaPredicted RBP20.79■□□□□ 0.92
PCDHA3-201ENST00000522353 RAPGEF2Q9Y4G8 1499 aa20.79■□□□□ 0.92
PCDHA3-201ENST00000522353 CCDC18Q5T9S5 1454 aa20.78■□□□□ 0.92
PCDHA3-201ENST00000522353 CCDC9Q9Y3X0 531 aaKnown RBP20.78■□□□□ 0.92
PCDHA3-201ENST00000522353 HSPA5P11021 654 aaKnown RBP20.78■□□□□ 0.92
PCDHA3-201ENST00000522353 ABCC8Q09428 1581 aa20.77■□□□□ 0.92
PCDHA3-201ENST00000522353 IPO8O15397 1037 aaKnown RBP20.77■□□□□ 0.92
PCDHA3-201ENST00000522353 FOXD1Q16676 465 aa20.77■□□□□ 0.92
PCDHA3-201ENST00000522353 U2AF1L5P0DN76 240 aaPredicted RBP20.76■□□□□ 0.91
PCDHA3-201ENST00000522353 U2AF1Q01081 240 aaKnown RBP eCLIP20.76■□□□□ 0.91
PCDHA3-201ENST00000522353 OSCARQ8IYS5 282 aa20.76■□□□□ 0.91
PCDHA3-201ENST00000522353 NGDNQ8NEJ9 315 aaKnown RBP20.75■□□□□ 0.91
PCDHA3-201ENST00000522353 CFAP44Q96MT7 982 aa20.75■□□□□ 0.91
PCDHA3-201ENST00000522353 TOP2AP11388 1531 aaKnown RBP20.75■□□□□ 0.91
PCDHA3-201ENST00000522353 TULP1O00294 542 aaPredicted RBP20.74■□□□□ 0.91
PCDHA3-201ENST00000522353 NAP1L2Q9ULW6 460 aaPredicted RBP20.74■□□□□ 0.91
PCDHA3-201ENST00000522353 TMX4Q9H1E5 349 aaPredicted RBP20.74■□□□□ 0.91
PCDHA3-201ENST00000522353 CYB5RLQ6IPT4 315 aa20.72■□□□□ 0.91
PCDHA3-201ENST00000522353 ZNF330Q9Y3S2 320 aaPredicted RBP20.71■□□□□ 0.91
PCDHA3-201ENST00000522353 PTMAP06454 111 aaKnown RBP20.71■□□□□ 0.91
PCDHA3-201ENST00000522353 TAOK2Q9UL54 1235 aa20.7■□□□□ 0.91
PCDHA3-201ENST00000522353 MCCP23508 829 aa20.7■□□□□ 0.9
PCDHA3-201ENST00000522353 RALBP1Q15311 655 aa20.7■□□□□ 0.9
PCDHA3-201ENST00000522353 ATAD2BQ9ULI0 1458 aa20.69■□□□□ 0.9
PCDHA3-201ENST00000522353 PTPRGP23470 1445 aa20.69■□□□□ 0.9
PCDHA3-201ENST00000522353 CCER2I3L3R5 266 aa20.69■□□□□ 0.9
PCDHA3-201ENST00000522353 FHOD3Q2V2M9 1422 aa20.69■□□□□ 0.9
PCDHA3-201ENST00000522353 HDAC5Q9UQL6 1122 aa20.69■□□□□ 0.9
PCDHA3-201ENST00000522353 HSP90AB1P08238 724 aaKnown RBP20.67■□□□□ 0.9
PCDHA3-201ENST00000522353 STK31Q9BXU1 1019 aa20.67■□□□□ 0.9
PCDHA3-201ENST00000522353 TPRNQ4KMQ1 711 aa20.66■□□□□ 0.9
PCDHA3-201ENST00000522353 RAB3GAP2Q9H2M9 1393 aa20.66■□□□□ 0.9
PCDHA3-201ENST00000522353 ISY1Q9ULR0 285 aaKnown RBP20.65■□□□□ 0.9
PCDHA3-201ENST00000522353 AMPHP49418 695 aa20.63■□□□□ 0.89
PCDHA3-201ENST00000522353 FANCD2Q9BXW9 1451 aa20.63■□□□□ 0.89
PCDHA3-201ENST00000522353 GOLGA6L4A6NEF3 574 aa20.62■□□□□ 0.89
PCDHA3-201ENST00000522353 NUTM2DQ5VT03 806 aaPredicted RBP20.61■□□□□ 0.89
PCDHA3-201ENST00000522353 LMOD3Q0VAK6 560 aa20.6■□□□□ 0.89
PCDHA3-201ENST00000522353 KIAA1211Q6ZU35 1233 aa20.6■□□□□ 0.89
PCDHA3-201ENST00000522353 VGFO15240 615 aaPredicted RBP20.59■□□□□ 0.89
PCDHA3-201ENST00000522353 GOLGA6L6A8MZA4 724 aa20.59■□□□□ 0.89
PCDHA3-201ENST00000522353 NRDCO43847 1150 aa20.58■□□□□ 0.88
PCDHA3-201ENST00000522353 UACAQ9BZF9 1416 aa20.58■□□□□ 0.88
PCDHA3-201ENST00000522353 HSCBQ8IWL3 235 aa20.57■□□□□ 0.88
PCDHA3-201ENST00000522353 L3MBTL2Q969R5 705 aa20.56■□□□□ 0.88
PCDHA3-201ENST00000522353 ERICH6BQ5W0A0 696 aa20.56■□□□□ 0.88
PCDHA3-201ENST00000522353 TAF7LQ5H9L4 462 aa20.55■□□□□ 0.88
PCDHA3-201ENST00000522353 DNTTIP2Q5QJE6 756 aaKnown RBP20.55■□□□□ 0.88
PCDHA3-201ENST00000522353 GORABQ5T7V8 394 aa20.55■□□□□ 0.88
PCDHA3-201ENST00000522353 TRAK1Q9UPV9 953 aa20.55■□□□□ 0.88
PCDHA3-201ENST00000522353 B4GALNT3Q6L9W6 998 aa20.54■□□□□ 0.88
PCDHA3-201ENST00000522353 NUTM2FA1L443 756 aa20.54■□□□□ 0.88
PCDHA3-201ENST00000522353 APBB1O00213 710 aa20.54■□□□□ 0.88
PCDHA3-201ENST00000522353 WIZO95785 1651 aa20.53■□□□□ 0.88
PCDHA3-201ENST00000522353 CCDC144AA2RUR9 1427 aa20.53■□□□□ 0.88
PCDHA3-201ENST00000522353 NOP58Q9Y2X3 529 aaKnown RBP20.53■□□□□ 0.88
PCDHA3-201ENST00000522353 PLCB2Q00722 1185 aa20.52■□□□□ 0.88
PCDHA3-201ENST00000522353 ITPRIPQ8IWB1 547 aa20.52■□□□□ 0.88
PCDHA3-201ENST00000522353 RWDD1Q9H446 243 aaPredicted RBP20.52■□□□□ 0.88
PCDHA3-201ENST00000522353 LTV1Q96GA3 475 aaPredicted RBP20.51■□□□□ 0.87
PCDHA3-201ENST00000522353 HMMRO75330 724 aa20.51■□□□□ 0.87
PCDHA3-201ENST00000522353 GNL2Q13823 731 aaKnown RBP20.5■□□□□ 0.87
PCDHA3-201ENST00000522353 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.5■□□□□ 0.87
PCDHA3-201ENST00000522353 GTF2E1P29083 439 aaPredicted RBP20.5■□□□□ 0.87
PCDHA3-201ENST00000522353 CHMP3Q9Y3E7 222 aa20.5■□□□□ 0.87
PCDHA3-201ENST00000522353 G3V3G9 751 aa20.49■□□□□ 0.87
PCDHA3-201ENST00000522353 DCAF8Q5TAQ9 597 aa20.49■□□□□ 0.87
PCDHA3-201ENST00000522353 NLRP13Q86W25 1043 aa20.49■□□□□ 0.87
PCDHA3-201ENST00000522353 GPATCH3Q96I76 525 aa20.49■□□□□ 0.87
PCDHA3-201ENST00000522353 RCAN3Q9UKA8 241 aa20.47■□□□□ 0.87
PCDHA3-201ENST00000522353 SMC4Q9NTJ3 1288 aa20.47■□□□□ 0.87
PCDHA3-201ENST00000522353 FAM69CQ0P6D2 419 aa20.47■□□□□ 0.87
PCDHA3-201ENST00000522353 AEBP2Q6ZN18 517 aaPredicted RBP20.45■□□□□ 0.86
PCDHA3-201ENST00000522353 EVC2Q86UK5 1308 aa20.45■□□□□ 0.86
PCDHA3-201ENST00000522353 COG3Q96JB2 828 aa20.45■□□□□ 0.86
PCDHA3-201ENST00000522353 SMARCA4P51532 1647 aa20.44■□□□□ 0.86
PCDHA3-201ENST00000522353 CLSTN1O94985 981 aa20.44■□□□□ 0.86
PCDHA3-201ENST00000522353 EVA1CP58658 441 aa20.44■□□□□ 0.86
PCDHA3-201ENST00000522353 PHLDB1Q86UU1 1377 aa20.42■□□□□ 0.86
PCDHA3-201ENST00000522353 GAPVD1Q14C86 1478 aa20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms