RNA–Protein interactions for RNA: ENST00000520520.1

CTNNA1-223, Transcript of catenin alpha 1, human

TSL 3

Gene CTNNA1, Length 484 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNNA1-223	ENST00000520520	FRMPD1	Q5SYB0	1578 aa		13.09	□□□□□ -0.31
CTNNA1-223	ENST00000520520	MADD	Q8WXG6	1647 aa		13.09	□□□□□ -0.31
CTNNA1-223	ENST00000520520	NEO1	Q92859	1461 aa		13.09	□□□□□ -0.31
CTNNA1-223	ENST00000520520	ADAMTSL3	P82987	1691 aa		13.08	□□□□□ -0.31
CTNNA1-223	ENST00000520520	PLEKHD1	A6NEE1	506 aa		13.07	□□□□□ -0.32
CTNNA1-223	ENST00000520520	PELP1	Q8IZL8	1130 aa	Known RBP	13.07	□□□□□ -0.32
CTNNA1-223	ENST00000520520	ATP1B4	Q9UN42	357 aa	Predicted RBP	13.07	□□□□□ -0.32
CTNNA1-223	ENST00000520520	BCORL1	Q5H9F3	1711 aa		13.07	□□□□□ -0.32
CTNNA1-223	ENST00000520520	PHLDB1	Q86UU1	1377 aa		13.07	□□□□□ -0.32
CTNNA1-223	ENST00000520520	RIMS1	Q86UR5	1692 aa	Known RBP	13.05	□□□□□ -0.32
CTNNA1-223	ENST00000520520	MLEC	Q14165	292 aa		13.05	□□□□□ -0.32
CTNNA1-223	ENST00000520520	FANCA	O15360	1455 aa		13.04	□□□□□ -0.32
CTNNA1-223	ENST00000520520	DENND4B	O75064	1496 aa	Predicted RBP	13.04	□□□□□ -0.32
CTNNA1-223	ENST00000520520	AKNA	Q7Z591	1439 aa		13.03	□□□□□ -0.32
CTNNA1-223	ENST00000520520	CDK13	Q14004	1512 aa	Known RBP	13.03	□□□□□ -0.32
CTNNA1-223	ENST00000520520	ARHGEF40	Q8TER5	1519 aa		13.03	□□□□□ -0.32
CTNNA1-223	ENST00000520520	TTC37	Q6PGP7	1564 aa		13.03	□□□□□ -0.32
CTNNA1-223	ENST00000520520	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	13.02	□□□□□ -0.33
CTNNA1-223	ENST00000520520	RICTOR	Q6R327	1708 aa		13.02	□□□□□ -0.33
CTNNA1-223	ENST00000520520	HSPA2	P54652	639 aa		13.01	□□□□□ -0.33
CTNNA1-223	ENST00000520520	CCER1	Q8TC90	406 aa	Predicted RBP	13.01	□□□□□ -0.33
CTNNA1-223	ENST00000520520	FBXO41	Q8TF61	875 aa		13.01	□□□□□ -0.33
CTNNA1-223	ENST00000520520	PCF11	O94913	1555 aa	Known RBP	13.01	□□□□□ -0.33
CTNNA1-223	ENST00000520520	CFAP74	Q9C0B2	1584 aa		13	□□□□□ -0.33
CTNNA1-223	ENST00000520520	YEATS2	Q9ULM3	1422 aa		12.99	□□□□□ -0.33
CTNNA1-223	ENST00000520520	UBTF	P17480	764 aa	Known RBP	12.99	□□□□□ -0.33
CTNNA1-223	ENST00000520520	LMTK3	Q96Q04	1460 aa		12.98	□□□□□ -0.33
CTNNA1-223	ENST00000520520	EFCAB5	A4FU69	1503 aa		12.98	□□□□□ -0.33
CTNNA1-223	ENST00000520520	ZFYVE16	Q7Z3T8	1539 aa		12.98	□□□□□ -0.33
CTNNA1-223	ENST00000520520	SIGLEC1	Q9BZZ2	1709 aa		12.97	□□□□□ -0.33
CTNNA1-223	ENST00000520520	FOXD4L1	Q9NU39	408 aa		12.97	□□□□□ -0.33
CTNNA1-223	ENST00000520520	MYT1L	Q9UL68	1186 aa		12.96	□□□□□ -0.33
CTNNA1-223	ENST00000520520	POGZ	Q7Z3K3	1410 aa		12.96	□□□□□ -0.34
CTNNA1-223	ENST00000520520	HECW1	Q76N89	1606 aa		12.95	□□□□□ -0.34
CTNNA1-223	ENST00000520520	SCAPER	Q9BY12	1400 aa		12.95	□□□□□ -0.34
CTNNA1-223	ENST00000520520	FER1L4	A9Z1Z3	1794 aa		12.94	□□□□□ -0.34
CTNNA1-223	ENST00000520520	ZMYM4	Q5VZL5	1548 aa		12.93	□□□□□ -0.34
CTNNA1-223	ENST00000520520	MYO5C	Q9NQX4	1742 aa		12.91	□□□□□ -0.34
CTNNA1-223	ENST00000520520	KIF14	Q15058	1648 aa		12.91	□□□□□ -0.34
CTNNA1-223	ENST00000520520	PLCH2	O75038	1416 aa		12.9	□□□□□ -0.34
CTNNA1-223	ENST00000520520	CEBPA	P49715	358 aa	Predicted RBP	12.9	□□□□□ -0.34
CTNNA1-223	ENST00000520520	EFCAB2	Q5VUJ9	269 aa		12.89	□□□□□ -0.35
CTNNA1-223	ENST00000520520	ARHGAP5	Q13017	1502 aa		12.88	□□□□□ -0.35
CTNNA1-223	ENST00000520520	MAGI2	Q86UL8	1455 aa		12.88	□□□□□ -0.35
CTNNA1-223	ENST00000520520	FMN1	Q68DA7	1419 aa		12.88	□□□□□ -0.35
CTNNA1-223	ENST00000520520	ARHGAP35	Q9NRY4	1499 aa		12.87	□□□□□ -0.35
CTNNA1-223	ENST00000520520	CENPB	P07199	599 aa	Predicted RBP	12.87	□□□□□ -0.35
CTNNA1-223	ENST00000520520	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	12.87	□□□□□ -0.35	2e-7	■■■□□ 19.2
CTNNA1-223	ENST00000520520	CDK11A	Q9UQ88	783 aa	Predicted RBP	12.87	□□□□□ -0.35
CTNNA1-223	ENST00000520520	CLIP1	P30622	1438 aa		12.87	□□□□□ -0.35
CTNNA1-223	ENST00000520520	C9orf84	Q5VXU9	1444 aa		12.87	□□□□□ -0.35
CTNNA1-223	ENST00000520520	VPS8	Q8N3P4	1428 aa		12.87	□□□□□ -0.35
CTNNA1-223	ENST00000520520	ATP10A	O60312	1499 aa		12.86	□□□□□ -0.35
CTNNA1-223	ENST00000520520	AFAP1	Q8N556	730 aa		12.86	□□□□□ -0.35
CTNNA1-223	ENST00000520520	CERK	Q8TCT0	537 aa		12.84	□□□□□ -0.35
CTNNA1-223	ENST00000520520	LRRIQ1	Q96JM4	1722 aa		12.84	□□□□□ -0.35
CTNNA1-223	ENST00000520520	ARHGEF12	Q9NZN5	1544 aa		12.83	□□□□□ -0.35
CTNNA1-223	ENST00000520520	TRO	Q12816	1431 aa	Predicted RBP	12.83	□□□□□ -0.36
CTNNA1-223	ENST00000520520	ZNF518A	Q6AHZ1	1483 aa		12.83	□□□□□ -0.36
CTNNA1-223	ENST00000520520	PREX1	Q8TCU6	1659 aa		12.83	□□□□□ -0.36
CTNNA1-223	ENST00000520520	APLP2	Q06481	763 aa		12.8	□□□□□ -0.36
CTNNA1-223	ENST00000520520	ESF1	Q9H501	851 aa	Known RBP	12.8	□□□□□ -0.36
CTNNA1-223	ENST00000520520	CDC42BPB	Q9Y5S2	1711 aa		12.79	□□□□□ -0.36
CTNNA1-223	ENST00000520520	DIP2C	Q9Y2E4	1556 aa		12.79	□□□□□ -0.36
CTNNA1-223	ENST00000520520	DIEXF	Q68CQ4	756 aa	Known RBP	12.79	□□□□□ -0.36
CTNNA1-223	ENST00000520520	ZNF777	Q9ULD5	760 aa	Predicted RBP	12.79	□□□□□ -0.36
CTNNA1-223	ENST00000520520	ABCA6	Q8N139	1617 aa		12.79	□□□□□ -0.36
CTNNA1-223	ENST00000520520	UHRF1BP1	Q6BDS2	1440 aa		12.79	□□□□□ -0.36
CTNNA1-223	ENST00000520520	KDM5C	P41229	1560 aa		12.77	□□□□□ -0.36
CTNNA1-223	ENST00000520520	TRAPPC8	Q9Y2L5	1435 aa		12.77	□□□□□ -0.37
CTNNA1-223	ENST00000520520		U3KPZ7	1027 aa	Predicted RBP	12.76	□□□□□ -0.37
CTNNA1-223	ENST00000520520	ACIN1	Q9UKV3	1341 aa	Known RBP	12.76	□□□□□ -0.37
CTNNA1-223	ENST00000520520	PREX2	Q70Z35	1606 aa		12.76	□□□□□ -0.37
CTNNA1-223	ENST00000520520	C3	P01024	1663 aa		12.75	□□□□□ -0.37
CTNNA1-223	ENST00000520520	STRC	Q7RTU9	1775 aa		12.75	□□□□□ -0.37
CTNNA1-223	ENST00000520520	ITSN2	Q9NZM3	1697 aa		12.75	□□□□□ -0.37
CTNNA1-223	ENST00000520520	ABCC1	P33527	1531 aa		12.74	□□□□□ -0.37
CTNNA1-223	ENST00000520520	CCDC18	Q5T9S5	1454 aa		12.72	□□□□□ -0.37
CTNNA1-223	ENST00000520520	CDC42BPA	Q5VT25	1732 aa		12.72	□□□□□ -0.37
CTNNA1-223	ENST00000520520	ZNF316	A6NFI3	1004 aa	Predicted RBP	12.72	□□□□□ -0.37
CTNNA1-223	ENST00000520520	MYCN	P04198	464 aa	Predicted RBP	12.72	□□□□□ -0.37
CTNNA1-223	ENST00000520520	MLH3	Q9UHC1	1453 aa		12.72	□□□□□ -0.37
CTNNA1-223	ENST00000520520	CASKIN1	Q8WXD9	1431 aa		12.71	□□□□□ -0.37
CTNNA1-223	ENST00000520520	DISP3	Q9P2K9	1392 aa		12.71	□□□□□ -0.37
CTNNA1-223	ENST00000520520	KIDINS220	Q9ULH0	1771 aa		12.71	□□□□□ -0.38
CTNNA1-223	ENST00000520520	CLSPN	Q9HAW4	1339 aa		12.7	□□□□□ -0.38
CTNNA1-223	ENST00000520520	HNRNPM	P52272	730 aa	Known RBP eCLIP	12.7	□□□□□ -0.38
CTNNA1-223	ENST00000520520	SUPT6H	Q7KZ85	1726 aa	Known RBP	12.7	□□□□□ -0.38
CTNNA1-223	ENST00000520520	RERE	Q9P2R6	1566 aa		12.69	□□□□□ -0.38
CTNNA1-223	ENST00000520520	SYCP2	Q9BX26	1530 aa		12.69	□□□□□ -0.38
CTNNA1-223	ENST00000520520	SAMD9L	Q8IVG5	1584 aa		12.68	□□□□□ -0.38
CTNNA1-223	ENST00000520520	SPAG9	O60271	1321 aa	Known RBP	12.67	□□□□□ -0.38
CTNNA1-223	ENST00000520520	SETD1B	Q9UPS6	1966 aa	Known RBP	12.67	□□□□□ -0.38
CTNNA1-223	ENST00000520520	FYCO1	Q9BQS8	1478 aa		12.67	□□□□□ -0.38
CTNNA1-223	ENST00000520520	RNF39	Q9H2S5	420 aa		12.67	□□□□□ -0.38
CTNNA1-223	ENST00000520520	AGL	P35573	1532 aa		12.67	□□□□□ -0.38
CTNNA1-223	ENST00000520520	GGT6	Q6P531	493 aa		12.65	□□□□□ -0.38
CTNNA1-223	ENST00000520520	ILDR2	Q71H61	639 aa		12.65	□□□□□ -0.38
CTNNA1-223	ENST00000520520	NCKAP5L	Q9HCH0	1330 aa		12.64	□□□□□ -0.39
CTNNA1-223	ENST00000520520	CLTC	Q00610	1675 aa	Known RBP	12.64	□□□□□ -0.39

Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms