RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 MTUS2Q5JR59 1369 aa18.3■□□□□ 0.52
VCAN-212ENST00000515397 MYT1LQ9UL68 1186 aa18.3■□□□□ 0.52
VCAN-212ENST00000515397 YEATS2Q9ULM3 1422 aa18.28■□□□□ 0.52
VCAN-212ENST00000515397 MYO5CQ9NQX4 1742 aa18.28■□□□□ 0.52
VCAN-212ENST00000515397 CFAP74Q9C0B2 1584 aa18.27■□□□□ 0.52
VCAN-212ENST00000515397 RICTORQ6R327 1708 aa18.26■□□□□ 0.51
VCAN-212ENST00000515397 POGZQ7Z3K3 1410 aa18.25■□□□□ 0.51
VCAN-212ENST00000515397 MLECQ14165 292 aa18.25■□□□□ 0.51
VCAN-212ENST00000515397 HNRNPMP52272 730 aaKnown RBP eCLIP18.24■□□□□ 0.51
VCAN-212ENST00000515397 CFDP1Q9UEE9 299 aaPredicted RBP18.24■□□□□ 0.51
VCAN-212ENST00000515397 GPATCH8Q9UKJ3 1502 aaKnown RBP18.23■□□□□ 0.51
VCAN-212ENST00000515397 CDC42BPBQ9Y5S2 1711 aa18.23■□□□□ 0.51
VCAN-212ENST00000515397 CCNB3Q8WWL7 1395 aa18.23■□□□□ 0.51
VCAN-212ENST00000515397 ARHGEF12Q9NZN5 1544 aa18.23■□□□□ 0.51
VCAN-212ENST00000515397 PLPPR3Q6T4P5 718 aa18.22■□□□□ 0.51
VCAN-212ENST00000515397 VPS8Q8N3P4 1428 aa18.22■□□□□ 0.51
VCAN-212ENST00000515397 TRAPPC8Q9Y2L5 1435 aa18.22■□□□□ 0.51
VCAN-212ENST00000515397 ZNF644Q9H582 1327 aaPredicted RBP18.22■□□□□ 0.51
VCAN-212ENST00000515397 KANK4Q5T7N3 995 aaPredicted RBP18.2■□□□□ 0.5
VCAN-212ENST00000515397 ZFYVE16Q7Z3T8 1539 aa18.19■□□□□ 0.5
VCAN-212ENST00000515397 CDC42BPAQ5VT25 1732 aa18.18■□□□□ 0.5
VCAN-212ENST00000515397 PREX2Q70Z35 1606 aa18.18■□□□□ 0.5
VCAN-212ENST00000515397 ARHGEF40Q8TER5 1519 aa18.18■□□□□ 0.5
VCAN-212ENST00000515397 ZMYM4Q5VZL5 1548 aa18.17■□□□□ 0.5
VCAN-212ENST00000515397 ZNF518AQ6AHZ1 1483 aa18.16■□□□□ 0.5
VCAN-212ENST00000515397 MAGI2Q86UL8 1455 aa18.16■□□□□ 0.5
VCAN-212ENST00000515397 ATP10AO60312 1499 aa18.14■□□□□ 0.5
VCAN-212ENST00000515397 SIGLEC1Q9BZZ2 1709 aa18.14■□□□□ 0.49
VCAN-212ENST00000515397 ABCC1P33527 1531 aa18.13■□□□□ 0.49
VCAN-212ENST00000515397 ILDR1Q86SU0 546 aaPredicted RBP18.13■□□□□ 0.49
VCAN-212ENST00000515397 EHBP1L1Q8N3D4 1523 aa18.13■□□□□ 0.49
VCAN-212ENST00000515397 SAMD9LQ8IVG5 1584 aa18.13■□□□□ 0.49
VCAN-212ENST00000515397 TIAM1Q13009 1591 aa18.12■□□□□ 0.49
VCAN-212ENST00000515397 SPAG9O60271 1321 aaKnown RBP18.11■□□□□ 0.49
VCAN-212ENST00000515397 NCOA2Q15596 1464 aa18.11■□□□□ 0.49
VCAN-212ENST00000515397 ADAMTSL3P82987 1691 aa18.1■□□□□ 0.49
VCAN-212ENST00000515397 SYCP2Q9BX26 1530 aa18.1■□□□□ 0.49
VCAN-212ENST00000515397 PTPRMP28827 1452 aa18.1■□□□□ 0.49
VCAN-212ENST00000515397 BCORL1Q5H9F3 1711 aa18.09■□□□□ 0.49
VCAN-212ENST00000515397 KDM5CP41229 1560 aa18.09■□□□□ 0.49
VCAN-212ENST00000515397 LRRC9Q6ZRR7 1453 aa18.09■□□□□ 0.49
VCAN-212ENST00000515397 APLP2Q06481 763 aa18.09■□□□□ 0.49
VCAN-212ENST00000515397 C9orf84Q5VXU9 1444 aa18.08■□□□□ 0.49
VCAN-212ENST00000515397 ITSN2Q9NZM3 1697 aa18.08■□□□□ 0.48
VCAN-212ENST00000515397 MADDQ8WXG6 1647 aa18.08■□□□□ 0.48
VCAN-212ENST00000515397 MLH3Q9UHC1 1453 aa18.07■□□□□ 0.48
VCAN-212ENST00000515397 CEBPAP49715 358 aaPredicted RBP18.06■□□□□ 0.48
VCAN-212ENST00000515397 KIAA1107Q9UPP5 1409 aa18.06■□□□□ 0.48
VCAN-212ENST00000515397 HECW2Q9P2P5 1572 aa18.05■□□□□ 0.48
VCAN-212ENST00000515397 DIP2CQ9Y2E4 1556 aa18.04■□□□□ 0.48
VCAN-212ENST00000515397 ABCA6Q8N139 1617 aa18.03■□□□□ 0.48
VCAN-212ENST00000515397 SUPT6HQ7KZ85 1726 aaKnown RBP18.03■□□□□ 0.48
VCAN-212ENST00000515397 PLEKHH2Q8IVE3 1493 aa18.02■□□□□ 0.48
VCAN-212ENST00000515397 RIMS1Q86UR5 1692 aaKnown RBP18.02■□□□□ 0.47
VCAN-212ENST00000515397 KIDINS220Q9ULH0 1771 aa18.02■□□□□ 0.47
VCAN-212ENST00000515397 MBD5Q9P267 1494 aa18.01■□□□□ 0.47
VCAN-212ENST00000515397 CAMSAP2Q08AD1 1489 aa17.99■□□□□ 0.47
VCAN-212ENST00000515397 MAP3K1Q13233 1512 aa17.98■□□□□ 0.47
VCAN-212ENST00000515397 PPARGC1BQ86YN6 1023 aaKnown RBP17.97■□□□□ 0.47
VCAN-212ENST00000515397 GGT6Q6P531 493 aa17.96■□□□□ 0.47
VCAN-212ENST00000515397 ESF1Q9H501 851 aaKnown RBP17.96■□□□□ 0.47
VCAN-212ENST00000515397 ATP7AQ04656 1500 aa17.96■□□□□ 0.47
VCAN-212ENST00000515397 HSPA2P54652 639 aa17.95■□□□□ 0.46
VCAN-212ENST00000515397 TSPY4P0CV99 314 aa17.94■□□□□ 0.46
VCAN-212ENST00000515397 TSPY10P0CW01 314 aa17.94■□□□□ 0.46
VCAN-212ENST00000515397 MYOM3Q5VTT5 1437 aa17.93■□□□□ 0.46
VCAN-212ENST00000515397 A2MP01023 1474 aa17.93■□□□□ 0.46
VCAN-212ENST00000515397 FER1L4A9Z1Z3 1794 aa17.92■□□□□ 0.46
VCAN-212ENST00000515397 RSPH4AQ5TD94 716 aa17.92■□□□□ 0.46
VCAN-212ENST00000515397 CCDC141Q6ZP82 1450 aa17.91■□□□□ 0.46
VCAN-212ENST00000515397 AGLP35573 1532 aa17.91■□□□□ 0.46
VCAN-212ENST00000515397 REREQ9P2R6 1566 aa17.91■□□□□ 0.46
VCAN-212ENST00000515397 INO80Q9ULG1 1556 aaPredicted RBP17.91■□□□□ 0.46
VCAN-212ENST00000515397 KIF3BO15066 747 aa17.89■□□□□ 0.45
VCAN-212ENST00000515397 RTEL1-TNFRSF6BF6WH68 1400 aa17.89■□□□□ 0.45
VCAN-212ENST00000515397 DHX29Q7Z478 1369 aaKnown RBP17.88■□□□□ 0.45
VCAN-212ENST00000515397 MIA2Q96PC5 1412 aa17.87■□□□□ 0.45
VCAN-212ENST00000515397 LMTK3Q96Q04 1460 aa17.86■□□□□ 0.45
VCAN-212ENST00000515397 CHIC2Q9UKJ5 165 aa17.85■□□□□ 0.45
VCAN-212ENST00000515397 ZMYM3Q14202 1370 aa17.84■□□□□ 0.45
VCAN-212ENST00000515397 FAM50AQ14320 339 aaKnown RBP17.83■□□□□ 0.44
VCAN-212ENST00000515397 RRP7BPQ9NSQ0 103 aa17.83■□□□□ 0.44
VCAN-212ENST00000515397 PLXNC1O60486 1568 aa17.83■□□□□ 0.44
VCAN-212ENST00000515397 ARHGEF5Q12774 1597 aa17.82■□□□□ 0.44
VCAN-212ENST00000515397 FGD6Q6ZV73 1430 aa17.81■□□□□ 0.44
VCAN-212ENST00000515397 ABCC5O15440 1437 aa17.81■□□□□ 0.44
VCAN-212ENST00000515397 ADGBQ8N7X0 1667 aa17.79■□□□□ 0.44
VCAN-212ENST00000515397 CNTLNQ9NXG0 1405 aa17.79■□□□□ 0.44
VCAN-212ENST00000515397 PTPN23Q9H3S7 1636 aa17.79■□□□□ 0.44
VCAN-212ENST00000515397 C3P01024 1663 aa17.77■□□□□ 0.44
VCAN-212ENST00000515397 WASHC2CQ9Y4E1 1318 aa17.77■□□□□ 0.44
VCAN-212ENST00000515397 FBXO31Q5XUX0 539 aaPredicted RBP17.77■□□□□ 0.44
VCAN-212ENST00000515397 DAPK1P53355 1430 aa17.75■□□□□ 0.43
VCAN-212ENST00000515397 CLTCQ00610 1675 aaKnown RBP17.75■□□□□ 0.43
VCAN-212ENST00000515397 PPP6R1Q9UPN7 881 aa17.75■□□□□ 0.43
VCAN-212ENST00000515397 UHRF1BP1Q6BDS2 1440 aa17.74■□□□□ 0.43
VCAN-212ENST00000515397 TCOF1Q13428 1488 aaKnown RBP17.74■□□□□ 0.43
VCAN-212ENST00000515397 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.73■□□□□ 0.43
VCAN-212ENST00000515397 KIF15Q9NS87 1388 aa17.73■□□□□ 0.43
VCAN-212ENST00000515397 ITGAEP38570 1179 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms